Hugging Face's logo

GleghornLab
/
medsam-vit-b

Model card Files
xet
Community
lhallee commited on
Commit
ff03cc0
·
verified ·
1 Parent(s): ff66cc5

Upload folder using huggingface_hub

Browse files
Files changed (40) hide show
  1. .gitattributes +1 -0
  2. CVPR_get_entry_number_demo_video.mp4 +3 -0
  3. FLARE22_Tr_0046_0000.nii.gz +3 -0
  4. lite_medsam.pth +3 -0
  5. medsam_point_prompt_flare22.pth +3 -0
  6. medsam_text_prompt_flare22.pth +3 -0
  7. medsam_vit_b.pth +3 -0
  8. readme.txt +1 -0
  9. test_demo/gts/2DBox_CXR_demo.npz +3 -0
  10. test_demo/gts/2DBox_Dermoscopy_demo.npz +3 -0
  11. test_demo/gts/2DBox_Endoscopy_demo.npz +3 -0
  12. test_demo/gts/2DBox_Fundus_demo.npz +3 -0
  13. test_demo/gts/2DBox_Mammography_demo.npz +3 -0
  14. test_demo/gts/2DBox_Microscope_demo.npz +3 -0
  15. test_demo/gts/2DBox_OCT_demo.npz +3 -0
  16. test_demo/gts/2DBox_US_demo.npz +3 -0
  17. test_demo/gts/3DBox_CT_demo.npz +3 -0
  18. test_demo/gts/3DBox_MR_demo.npz +3 -0
  19. test_demo/imgs/2DBox_CXR_demo.npz +3 -0
  20. test_demo/imgs/2DBox_Dermoscopy_demo.npz +3 -0
  21. test_demo/imgs/2DBox_Endoscopy_demo.npz +3 -0
  22. test_demo/imgs/2DBox_Fundus_demo.npz +3 -0
  23. test_demo/imgs/2DBox_Mammography_demo.npz +3 -0
  24. test_demo/imgs/2DBox_Microscope_demo.npz +3 -0
  25. test_demo/imgs/2DBox_OCT_demo.npz +3 -0
  26. test_demo/imgs/2DBox_US_demo.npz +3 -0
  27. test_demo/imgs/3DBox_CT_demo.npz +3 -0
  28. test_demo/imgs/3DBox_MR_demo.npz +3 -0
  29. test_demo/segs/2DBox_CXR_demo.npz +3 -0
  30. test_demo/segs/2DBox_Dermoscopy_demo.npz +3 -0
  31. test_demo/segs/2DBox_Endoscopy_demo.npz +3 -0
  32. test_demo/segs/2DBox_Fundus_demo.npz +3 -0
  33. test_demo/segs/2DBox_Mammography_demo.npz +3 -0
  34. test_demo/segs/2DBox_Microscope_demo.npz +3 -0
  35. test_demo/segs/2DBox_OCT_demo.npz +3 -0
  36. test_demo/segs/2DBox_US_demo.npz +3 -0
  37. test_demo/segs/3DBox_CT_demo.npz +3 -0
  38. test_demo/segs/3DBox_MR_demo.npz +3 -0
  39. test_demo/segs/efficiency.csv +11 -0
  40. tinyvit_pretrained.pt +3 -0
.gitattributes CHANGED
@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
 
 
33
  *.zip filter=lfs diff=lfs merge=lfs -text
34
  *.zst filter=lfs diff=lfs merge=lfs -text
35
  *tfevents* filter=lfs diff=lfs merge=lfs -text
36
+ CVPR_get_entry_number_demo_video.mp4 filter=lfs diff=lfs merge=lfs -text
CVPR_get_entry_number_demo_video.mp4 ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d2f9fb16e54d75d6973a726dcd31e625e56220713dd1e1785a456148bfea23d9
3
+ size 3167989
FLARE22_Tr_0046_0000.nii.gz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a57e8c22668db3c78e09be2c3cb19c8a6b413208a39dd3bf4ab5e3dedbce235b
3
+ size 27818774
lite_medsam.pth ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:79d8c9dca6db4d69d3f905579e5250af05e859fff9c1f543e89a513c3028ce76
3
+ size 39370479
medsam_point_prompt_flare22.pth ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:14542b58af5fcf76bb903dadf50d9248fa962cfc909b8c70b298ad0dafa03c86
3
+ size 375068157
medsam_text_prompt_flare22.pth ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:05b1716a6c381072e65382a30af6f2f46c5395ca43aebfa90f47008d9d225320
3
+ size 628331128
medsam_vit_b.pth ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:34b34b78c1d18cb8c6bf84cf9c00e135d6d6c965699f3c0e31ef1bc9dcb5be74
3
+ size 375049145
readme.txt ADDED
@@ -0,0 +1 @@
 
 
1
+ Please note that the models can only be used for research purpose.
test_demo/gts/2DBox_CXR_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:72e900424e5ec9093210243abab9ebe19ebffa2df4448141cb3b89e322691d3b
3
+ size 680
test_demo/gts/2DBox_Dermoscopy_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:377729a6ff6693d4ec042bfc99f7b2d4a18fbad4e020b02ff071191788a1d858
3
+ size 5009
test_demo/gts/2DBox_Endoscopy_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:32468005cec21eb90351f4dbbdc1bf0f551b536f7a7666c8b62899e3de517480
3
+ size 9028
test_demo/gts/2DBox_Fundus_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5049a80a37a3f2ef751ac9c91d7fe4c91ae926a281580199b71ca65d07fc5e22
3
+ size 8565
test_demo/gts/2DBox_Mammography_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:3970e5e2ea1a8bc92fb2df25f59bfe58bbc5352aac415e3e06b756eaec2b2e77
3
+ size 7774
test_demo/gts/2DBox_Microscope_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bf0018f61072e876f3c2b8b5ca5d02a541aebd9116318f28ff356f614771cb0b
3
+ size 8485
test_demo/gts/2DBox_OCT_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:e00839198999747f65a8ae59117f2744dc9c8bf47c49a7bf777e44c4dfcc58f9
3
+ size 943
test_demo/gts/2DBox_US_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:a2ce64d2b8363f3b9d3153af6d16f461ba83d1c0cfd266dbcfe1aafa6980869c
3
+ size 760
test_demo/gts/3DBox_CT_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:73ea61aad58f88f2314c751e0b0f1ec0afce3fb98def27af2cf6d72fbfa4defc
3
+ size 4176
test_demo/gts/3DBox_MR_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d784510ae3306cce1169dccaaf98db3f29132a5470d4a782390b9008c9d89771
3
+ size 16844
test_demo/imgs/2DBox_CXR_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:8f8bb45b1dee3636ecfb347c50a3a6d00319cabd841896b8487aa20bb1234f7b
3
+ size 54989
test_demo/imgs/2DBox_Dermoscopy_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:81cab96b2366b28480124601905951c99846cf122b45af5efaf46ca04e36dc34
3
+ size 1860483
test_demo/imgs/2DBox_Endoscopy_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:b7f7e897cd19979bc22d0c51b53a973c3e13beb9bb68a5c386e9d9aba0714f3c
3
+ size 2673327
test_demo/imgs/2DBox_Fundus_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1cc40683c9761b88a5b9401ded1caf7a28178168e7b4df9d7e9455414fa33aa1
3
+ size 4168592
test_demo/imgs/2DBox_Mammography_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5c2e4aecae0a1ec42c04e86b6067921d6e3e34ea8f8268e2d3bc9026fe940e53
3
+ size 3697766
test_demo/imgs/2DBox_Microscope_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:aab4faaff6aab9c675a5be4a2954cccd60b863fd54dd47c77a8a45d613a27304
3
+ size 1093971
test_demo/imgs/2DBox_OCT_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:446f0edc7cfc6b118ded017eae4159f48a7037f21d02620ae920462c61e989f7
3
+ size 253257
test_demo/imgs/2DBox_US_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:5f9cb2dca6850f8c6ecec1d9cc8533780ebc9d52ca65cf700458d2259bc64652
3
+ size 223690
test_demo/imgs/3DBox_CT_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:260ad67e84f9d6cbcd760dc0f32ce1fc22b7c4b4d57a9b7267a91992ae452089
3
+ size 1568419
test_demo/imgs/3DBox_MR_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:58dbc9003e2b68f9e3f91cbe56365af3272470c7b96590ddbb6c003c46e92ef3
3
+ size 992415
test_demo/segs/2DBox_CXR_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:031945b6759eac5e8c0f6124fcc6d0e086edf6e93612105e617378f9ccd8d6ca
3
+ size 744
test_demo/segs/2DBox_Dermoscopy_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:21ee7ef83a61bb7f02bd362a19e87d0be91d6d32c17a3b278a534de24f70c37d
3
+ size 4757
test_demo/segs/2DBox_Endoscopy_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d039cdbbd8a77ddba0003ae32b711aacabbd8331d4eada519e933cb9f9b33160
3
+ size 8752
test_demo/segs/2DBox_Fundus_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:102d509f2e4f34290d9745deef0c1092e44f3fdcca48c53ad0d6604826fbc460
3
+ size 8517
test_demo/segs/2DBox_Mammography_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:d12e3ba21cdb6ece5379510dbd7e008f96d91213bd2b7d3f20f6907f69ff3cd3
3
+ size 7263
test_demo/segs/2DBox_Microscope_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:1849191695f92fbd1ab5f6632df6e6fdc468a5b386667dc0877fc3e36307f571
3
+ size 8356
test_demo/segs/2DBox_OCT_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:bea1453332b1fdcc508fde9571ef5352361ae7cba1cbec794e12639c6eafcfde
3
+ size 978
test_demo/segs/2DBox_US_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:c763bfa8ee33ccf1d1796e9de5c7b0c11ad86ce080a55bdc6967bf1335363ff7
3
+ size 765
test_demo/segs/3DBox_CT_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:22da1aa33548f20cfd6adb106878e5f3249532785be6b2b501ba90a832687c59
3
+ size 3969
test_demo/segs/3DBox_MR_demo.npz ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:dca871c671567a8141c66616b83bce4adda1931629f4d612e34bfd060746a541
3
+ size 15381
test_demo/segs/efficiency.csv ADDED
@@ -0,0 +1,11 @@
 
 
 
 
 
 
 
 
 
 
 
 
1
+ case,time
2
+ 2DBox_CXR_demo.npz,1.6401071548461914
3
+ 2DBox_Dermoscopy_demo.npz,3.0999627113342285
4
+ 2DBox_Endoscopy_demo.npz,2.7011821269989014
5
+ 2DBox_Fundus_demo.npz,4.459224700927734
6
+ 2DBox_Mammography_demo.npz,7.83874773979187
7
+ 2DBox_Microscope_demo.npz,10.50558853149414
8
+ 2DBox_OCT_demo.npz,3.704594373703003
9
+ 2DBox_US_demo.npz,2.0532946586608887
10
+ 3DBox_CT_demo.npz,8.557647466659546
11
+ 3DBox_MR_demo.npz,61.15630078315735
tinyvit_pretrained.pt ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:675d6495a5067c6fc89024260d1f57860857500cb0090da886b7a096b8c5c846
3
+ size 23054725