Upload folder using huggingface_hub
Browse files- .DS_Store +0 -0
- dataset.json +15 -0
- fold_0/checkpoint_best.pth +3 -0
- plans.json +186 -0
.DS_Store
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Binary file (6.15 kB). View file
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dataset.json
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{
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"channel_names": {
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"0000": "grayscale"
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},
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"labels": {
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"background": 0,
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"SAT": 1,
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"Muscle": 2,
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"Inter/Intra": 3,
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"Bone": 4
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},
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"numTraining": 1302,
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"file_ending": ".png",
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"overwrite_image_reader_writer": "NaturalImage2DIO"
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}
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fold_0/checkpoint_best.pth
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version https://git-lfs.github.com/spec/v1
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oid sha256:dbb43ff3e9f17a66637a86eb0a13d1b1cc58319768c967f9d6d20b2498c0476e
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size 165245282
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plans.json
ADDED
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@@ -0,0 +1,186 @@
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{
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"dataset_name": "Dataset005_LegCT_refine2D_05042026",
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"plans_name": "nnUNetPlans",
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"original_median_spacing_after_transp": [
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999.0,
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1.0,
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1.0
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],
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"original_median_shape_after_transp": [
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1,
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168,
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225
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],
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"image_reader_writer": "NaturalImage2DIO",
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"transpose_forward": [
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0,
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1,
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2
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],
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"transpose_backward": [
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0,
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1,
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2
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],
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"configurations": {
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"2d": {
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"data_identifier": "nnUNetPlans_2d",
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"preprocessor_name": "DefaultPreprocessor",
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"batch_size": 50,
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"patch_size": [
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192,
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256
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],
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"median_image_size_in_voxels": [
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168.0,
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225.0
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],
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"spacing": [
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999.0,
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1.0,
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1.0
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],
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"normalization_schemes": [
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"ZScoreNormalization"
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],
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"use_mask_for_norm": [
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true
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],
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"resampling_fn_data": "resample_data_or_seg_to_shape",
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| 50 |
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"resampling_fn_seg": "resample_data_or_seg_to_shape",
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| 51 |
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"resampling_fn_data_kwargs": {
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"is_seg": false,
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"order": 3,
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"order_z": 0,
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| 55 |
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"force_separate_z": null
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},
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| 57 |
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"resampling_fn_seg_kwargs": {
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| 58 |
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"is_seg": true,
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| 59 |
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"order": 1,
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| 60 |
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"order_z": 0,
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| 61 |
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"force_separate_z": null
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| 62 |
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},
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| 63 |
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"resampling_fn_probabilities": "resample_data_or_seg_to_shape",
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| 64 |
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"resampling_fn_probabilities_kwargs": {
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| 65 |
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"is_seg": false,
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| 66 |
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"order": 1,
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| 67 |
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"order_z": 0,
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"force_separate_z": null
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| 69 |
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},
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| 70 |
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"architecture": {
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| 71 |
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"network_class_name": "dynamic_network_architectures.architectures.unet.PlainConvUNet",
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| 72 |
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"arch_kwargs": {
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| 73 |
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"n_stages": 6,
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| 74 |
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"features_per_stage": [
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],
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"conv_op": "torch.nn.modules.conv.Conv2d",
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"kernel_sizes": [
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[
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"strides": [
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"eps": 1e-05,
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"dropout_op": null,
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"nonlin": "torch.nn.LeakyReLU",
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"nonlin_kwargs": {
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"inplace": true
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},
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"_kw_requires_import": [
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| 164 |
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"nonlin"
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]
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},
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"batch_dice": true
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| 171 |
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}
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| 172 |
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},
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"experiment_planner_used": "ExperimentPlanner",
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| 174 |
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"label_manager": "LabelManager",
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"foreground_intensity_properties_per_channel": {
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"0": {
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"max": 255.0,
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"mean": 133.48519941613662,
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"median": 135.0,
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"min": 0.0,
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"percentile_00_5": 4.0,
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"percentile_99_5": 255.0,
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"std": 58.672781313075724
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}
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| 185 |
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}
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| 186 |
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}
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