Update README.md
Browse files
README.md
CHANGED
|
@@ -1,3 +1,43 @@
|
|
| 1 |
---
|
| 2 |
license: cc-by-nc-4.0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 3 |
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
---
|
| 2 |
license: cc-by-nc-4.0
|
| 3 |
+
library_name: pytorch
|
| 4 |
+
tags:
|
| 5 |
+
- medical-image-segmentation
|
| 6 |
+
- ct
|
| 7 |
+
- lower-extremity
|
| 8 |
+
- body-composition
|
| 9 |
+
- nnunet
|
| 10 |
+
- computer-vision
|
| 11 |
+
pipeline_tag: image-segmentation
|
| 12 |
---
|
| 13 |
+
|
| 14 |
+
# LegSegNet
|
| 15 |
+
|
| 16 |
+
**GitHub:** [https://github.com/gogochen07/LegSegNet](https://github.com/gogochen07/LegSegNet)
|
| 17 |
+
|
| 18 |
+
**LegSegNet** is a deep learning system for lower-extremity CT tissue segmentation and body composition quantification. Given an input CT scan, LegSegNet segments four tissue compartments: **bone**, **skeletal muscle**, **subcutaneous adipose tissue (SAT)**, and **inter- and intramuscular adipose tissue (IMAT)**.
|
| 19 |
+
|
| 20 |
+
The system can further convert predicted masks into quantitative measurements, including tissue area, tissue volume, CT attenuation, and tissue-volume ratios.
|
| 21 |
+
|
| 22 |
+
## Model Details
|
| 23 |
+
|
| 24 |
+
- **Task:** Lower-extremity CT tissue segmentation
|
| 25 |
+
- **Input:** Lower-extremity CT images
|
| 26 |
+
- **Output:** Multi-class segmentation mask and body composition measurements
|
| 27 |
+
- **Labels:** Background, SAT, skeletal muscle, IMAT, bone
|
| 28 |
+
- **Backbone:** nnU-Net-based segmentation model
|
| 29 |
+
|
| 30 |
+
## Usage
|
| 31 |
+
|
| 32 |
+
Please refer to the GitHub repository for installation instructions, inference scripts, and example commands:
|
| 33 |
+
|
| 34 |
+
[https://github.com/gogochen07/LegSegNet](https://github.com/gogochen07/LegSegNet)
|
| 35 |
+
|
| 36 |
+
## Citation
|
| 37 |
+
|
| 38 |
+
Please cite the following manuscript if you find the model useful:
|
| 39 |
+
|
| 40 |
+
|
| 41 |
+
## License
|
| 42 |
+
|
| 43 |
+
This project is released under the **Creative Commons Attribution-NonCommercial 4.0 International License (CC BY-NC 4.0)**.
|