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Input a protein sequence; model generates a classification tag (algal/bacterial) via next-token prediction.
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## Limitations
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- Under-representation of some algal lineages (dinoflagellates, rhodophytes, Chromerida)
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- Up to ~10% false positive rate for species with complex endosymbiotic histories
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- Does not classify eukaryotic protist contaminants
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## Citation
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Nelson DR, Jaiswal AK, Ismail NS, Mystikou A, Salehi-Ashtiani K. Pan-microalgal dark proteome mapping via interpretable deep learning and synthetic chimeras. *Patterns*. 2024;6(11).
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Input a protein sequence; model generates a classification tag (algal/bacterial) via next-token prediction.
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## Citation
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Nelson DR, Jaiswal AK, Ismail NS, Mystikou A, Salehi-Ashtiani K. Pan-microalgal dark proteome mapping via interpretable deep learning and synthetic chimeras. *Patterns*. 2024;6(11).
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