Gustavo Henrique Ferreira Cruz
commited on
Upload folder using huggingface_hub
Browse files- added_tokens.json +22 -0
- config.json +26 -0
- model.safetensors +3 -0
- special_tokens_map.json +44 -0
- tokenizer_config.json +225 -0
- vocab.txt +0 -0
added_tokens.json
ADDED
|
@@ -0,0 +1,22 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"<|FLANK_AFTER|>": 30541,
|
| 3 |
+
"<|FLANK_BEFORE|>": 30540,
|
| 4 |
+
"<|GENE|>": 30539,
|
| 5 |
+
"<|ORGANISM|>": 30538,
|
| 6 |
+
"<|SEQUENCE|>": 30537,
|
| 7 |
+
"[A]": 30522,
|
| 8 |
+
"[B]": 30532,
|
| 9 |
+
"[C]": 30523,
|
| 10 |
+
"[D]": 30533,
|
| 11 |
+
"[G]": 30524,
|
| 12 |
+
"[H]": 30534,
|
| 13 |
+
"[K]": 30530,
|
| 14 |
+
"[M]": 30531,
|
| 15 |
+
"[N]": 30536,
|
| 16 |
+
"[R]": 30526,
|
| 17 |
+
"[S]": 30528,
|
| 18 |
+
"[T]": 30525,
|
| 19 |
+
"[V]": 30535,
|
| 20 |
+
"[W]": 30529,
|
| 21 |
+
"[Y]": 30527
|
| 22 |
+
}
|
config.json
ADDED
|
@@ -0,0 +1,26 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"architectures": [
|
| 3 |
+
"BertForSequenceClassification"
|
| 4 |
+
],
|
| 5 |
+
"attention_probs_dropout_prob": 0.1,
|
| 6 |
+
"classifier_dropout": null,
|
| 7 |
+
"dtype": "float32",
|
| 8 |
+
"gradient_checkpointing": false,
|
| 9 |
+
"hidden_act": "gelu",
|
| 10 |
+
"hidden_dropout_prob": 0.1,
|
| 11 |
+
"hidden_size": 768,
|
| 12 |
+
"initializer_range": 0.02,
|
| 13 |
+
"intermediate_size": 3072,
|
| 14 |
+
"layer_norm_eps": 1e-12,
|
| 15 |
+
"max_position_embeddings": 512,
|
| 16 |
+
"model_type": "bert",
|
| 17 |
+
"num_attention_heads": 12,
|
| 18 |
+
"num_hidden_layers": 12,
|
| 19 |
+
"pad_token_id": 0,
|
| 20 |
+
"position_embedding_type": "absolute",
|
| 21 |
+
"problem_type": "single_label_classification",
|
| 22 |
+
"transformers_version": "4.57.0",
|
| 23 |
+
"type_vocab_size": 2,
|
| 24 |
+
"use_cache": true,
|
| 25 |
+
"vocab_size": 30542
|
| 26 |
+
}
|
model.safetensors
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:41941891e427504eae9593301d3dab4e157b8fde8637969bd3140a0d7c54b4f8
|
| 3 |
+
size 438020088
|
special_tokens_map.json
ADDED
|
@@ -0,0 +1,44 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"additional_special_tokens": [
|
| 3 |
+
{
|
| 4 |
+
"content": "<|SEQUENCE|>",
|
| 5 |
+
"lstrip": false,
|
| 6 |
+
"normalized": false,
|
| 7 |
+
"rstrip": false,
|
| 8 |
+
"single_word": false
|
| 9 |
+
},
|
| 10 |
+
{
|
| 11 |
+
"content": "<|ORGANISM|>",
|
| 12 |
+
"lstrip": false,
|
| 13 |
+
"normalized": false,
|
| 14 |
+
"rstrip": false,
|
| 15 |
+
"single_word": false
|
| 16 |
+
},
|
| 17 |
+
{
|
| 18 |
+
"content": "<|GENE|>",
|
| 19 |
+
"lstrip": false,
|
| 20 |
+
"normalized": false,
|
| 21 |
+
"rstrip": false,
|
| 22 |
+
"single_word": false
|
| 23 |
+
},
|
| 24 |
+
{
|
| 25 |
+
"content": "<|FLANK_BEFORE|>",
|
| 26 |
+
"lstrip": false,
|
| 27 |
+
"normalized": false,
|
| 28 |
+
"rstrip": false,
|
| 29 |
+
"single_word": false
|
| 30 |
+
},
|
| 31 |
+
{
|
| 32 |
+
"content": "<|FLANK_AFTER|>",
|
| 33 |
+
"lstrip": false,
|
| 34 |
+
"normalized": false,
|
| 35 |
+
"rstrip": false,
|
| 36 |
+
"single_word": false
|
| 37 |
+
}
|
| 38 |
+
],
|
| 39 |
+
"cls_token": "[CLS]",
|
| 40 |
+
"mask_token": "[MASK]",
|
| 41 |
+
"pad_token": "[PAD]",
|
| 42 |
+
"sep_token": "[SEP]",
|
| 43 |
+
"unk_token": "[UNK]"
|
| 44 |
+
}
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1,225 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"added_tokens_decoder": {
|
| 3 |
+
"0": {
|
| 4 |
+
"content": "[PAD]",
|
| 5 |
+
"lstrip": false,
|
| 6 |
+
"normalized": false,
|
| 7 |
+
"rstrip": false,
|
| 8 |
+
"single_word": false,
|
| 9 |
+
"special": true
|
| 10 |
+
},
|
| 11 |
+
"100": {
|
| 12 |
+
"content": "[UNK]",
|
| 13 |
+
"lstrip": false,
|
| 14 |
+
"normalized": false,
|
| 15 |
+
"rstrip": false,
|
| 16 |
+
"single_word": false,
|
| 17 |
+
"special": true
|
| 18 |
+
},
|
| 19 |
+
"101": {
|
| 20 |
+
"content": "[CLS]",
|
| 21 |
+
"lstrip": false,
|
| 22 |
+
"normalized": false,
|
| 23 |
+
"rstrip": false,
|
| 24 |
+
"single_word": false,
|
| 25 |
+
"special": true
|
| 26 |
+
},
|
| 27 |
+
"102": {
|
| 28 |
+
"content": "[SEP]",
|
| 29 |
+
"lstrip": false,
|
| 30 |
+
"normalized": false,
|
| 31 |
+
"rstrip": false,
|
| 32 |
+
"single_word": false,
|
| 33 |
+
"special": true
|
| 34 |
+
},
|
| 35 |
+
"103": {
|
| 36 |
+
"content": "[MASK]",
|
| 37 |
+
"lstrip": false,
|
| 38 |
+
"normalized": false,
|
| 39 |
+
"rstrip": false,
|
| 40 |
+
"single_word": false,
|
| 41 |
+
"special": true
|
| 42 |
+
},
|
| 43 |
+
"30522": {
|
| 44 |
+
"content": "[A]",
|
| 45 |
+
"lstrip": false,
|
| 46 |
+
"normalized": true,
|
| 47 |
+
"rstrip": false,
|
| 48 |
+
"single_word": false,
|
| 49 |
+
"special": false
|
| 50 |
+
},
|
| 51 |
+
"30523": {
|
| 52 |
+
"content": "[C]",
|
| 53 |
+
"lstrip": false,
|
| 54 |
+
"normalized": true,
|
| 55 |
+
"rstrip": false,
|
| 56 |
+
"single_word": false,
|
| 57 |
+
"special": false
|
| 58 |
+
},
|
| 59 |
+
"30524": {
|
| 60 |
+
"content": "[G]",
|
| 61 |
+
"lstrip": false,
|
| 62 |
+
"normalized": true,
|
| 63 |
+
"rstrip": false,
|
| 64 |
+
"single_word": false,
|
| 65 |
+
"special": false
|
| 66 |
+
},
|
| 67 |
+
"30525": {
|
| 68 |
+
"content": "[T]",
|
| 69 |
+
"lstrip": false,
|
| 70 |
+
"normalized": true,
|
| 71 |
+
"rstrip": false,
|
| 72 |
+
"single_word": false,
|
| 73 |
+
"special": false
|
| 74 |
+
},
|
| 75 |
+
"30526": {
|
| 76 |
+
"content": "[R]",
|
| 77 |
+
"lstrip": false,
|
| 78 |
+
"normalized": true,
|
| 79 |
+
"rstrip": false,
|
| 80 |
+
"single_word": false,
|
| 81 |
+
"special": false
|
| 82 |
+
},
|
| 83 |
+
"30527": {
|
| 84 |
+
"content": "[Y]",
|
| 85 |
+
"lstrip": false,
|
| 86 |
+
"normalized": true,
|
| 87 |
+
"rstrip": false,
|
| 88 |
+
"single_word": false,
|
| 89 |
+
"special": false
|
| 90 |
+
},
|
| 91 |
+
"30528": {
|
| 92 |
+
"content": "[S]",
|
| 93 |
+
"lstrip": false,
|
| 94 |
+
"normalized": true,
|
| 95 |
+
"rstrip": false,
|
| 96 |
+
"single_word": false,
|
| 97 |
+
"special": false
|
| 98 |
+
},
|
| 99 |
+
"30529": {
|
| 100 |
+
"content": "[W]",
|
| 101 |
+
"lstrip": false,
|
| 102 |
+
"normalized": true,
|
| 103 |
+
"rstrip": false,
|
| 104 |
+
"single_word": false,
|
| 105 |
+
"special": false
|
| 106 |
+
},
|
| 107 |
+
"30530": {
|
| 108 |
+
"content": "[K]",
|
| 109 |
+
"lstrip": false,
|
| 110 |
+
"normalized": true,
|
| 111 |
+
"rstrip": false,
|
| 112 |
+
"single_word": false,
|
| 113 |
+
"special": false
|
| 114 |
+
},
|
| 115 |
+
"30531": {
|
| 116 |
+
"content": "[M]",
|
| 117 |
+
"lstrip": false,
|
| 118 |
+
"normalized": true,
|
| 119 |
+
"rstrip": false,
|
| 120 |
+
"single_word": false,
|
| 121 |
+
"special": false
|
| 122 |
+
},
|
| 123 |
+
"30532": {
|
| 124 |
+
"content": "[B]",
|
| 125 |
+
"lstrip": false,
|
| 126 |
+
"normalized": true,
|
| 127 |
+
"rstrip": false,
|
| 128 |
+
"single_word": false,
|
| 129 |
+
"special": false
|
| 130 |
+
},
|
| 131 |
+
"30533": {
|
| 132 |
+
"content": "[D]",
|
| 133 |
+
"lstrip": false,
|
| 134 |
+
"normalized": true,
|
| 135 |
+
"rstrip": false,
|
| 136 |
+
"single_word": false,
|
| 137 |
+
"special": false
|
| 138 |
+
},
|
| 139 |
+
"30534": {
|
| 140 |
+
"content": "[H]",
|
| 141 |
+
"lstrip": false,
|
| 142 |
+
"normalized": true,
|
| 143 |
+
"rstrip": false,
|
| 144 |
+
"single_word": false,
|
| 145 |
+
"special": false
|
| 146 |
+
},
|
| 147 |
+
"30535": {
|
| 148 |
+
"content": "[V]",
|
| 149 |
+
"lstrip": false,
|
| 150 |
+
"normalized": true,
|
| 151 |
+
"rstrip": false,
|
| 152 |
+
"single_word": false,
|
| 153 |
+
"special": false
|
| 154 |
+
},
|
| 155 |
+
"30536": {
|
| 156 |
+
"content": "[N]",
|
| 157 |
+
"lstrip": false,
|
| 158 |
+
"normalized": true,
|
| 159 |
+
"rstrip": false,
|
| 160 |
+
"single_word": false,
|
| 161 |
+
"special": false
|
| 162 |
+
},
|
| 163 |
+
"30537": {
|
| 164 |
+
"content": "<|SEQUENCE|>",
|
| 165 |
+
"lstrip": false,
|
| 166 |
+
"normalized": false,
|
| 167 |
+
"rstrip": false,
|
| 168 |
+
"single_word": false,
|
| 169 |
+
"special": true
|
| 170 |
+
},
|
| 171 |
+
"30538": {
|
| 172 |
+
"content": "<|ORGANISM|>",
|
| 173 |
+
"lstrip": false,
|
| 174 |
+
"normalized": false,
|
| 175 |
+
"rstrip": false,
|
| 176 |
+
"single_word": false,
|
| 177 |
+
"special": true
|
| 178 |
+
},
|
| 179 |
+
"30539": {
|
| 180 |
+
"content": "<|GENE|>",
|
| 181 |
+
"lstrip": false,
|
| 182 |
+
"normalized": false,
|
| 183 |
+
"rstrip": false,
|
| 184 |
+
"single_word": false,
|
| 185 |
+
"special": true
|
| 186 |
+
},
|
| 187 |
+
"30540": {
|
| 188 |
+
"content": "<|FLANK_BEFORE|>",
|
| 189 |
+
"lstrip": false,
|
| 190 |
+
"normalized": false,
|
| 191 |
+
"rstrip": false,
|
| 192 |
+
"single_word": false,
|
| 193 |
+
"special": true
|
| 194 |
+
},
|
| 195 |
+
"30541": {
|
| 196 |
+
"content": "<|FLANK_AFTER|>",
|
| 197 |
+
"lstrip": false,
|
| 198 |
+
"normalized": false,
|
| 199 |
+
"rstrip": false,
|
| 200 |
+
"single_word": false,
|
| 201 |
+
"special": true
|
| 202 |
+
}
|
| 203 |
+
},
|
| 204 |
+
"additional_special_tokens": [
|
| 205 |
+
"<|SEQUENCE|>",
|
| 206 |
+
"<|ORGANISM|>",
|
| 207 |
+
"<|GENE|>",
|
| 208 |
+
"<|FLANK_BEFORE|>",
|
| 209 |
+
"<|FLANK_AFTER|>"
|
| 210 |
+
],
|
| 211 |
+
"clean_up_tokenization_spaces": true,
|
| 212 |
+
"cls_token": "[CLS]",
|
| 213 |
+
"do_basic_tokenize": true,
|
| 214 |
+
"do_lower_case": false,
|
| 215 |
+
"extra_special_tokens": {},
|
| 216 |
+
"mask_token": "[MASK]",
|
| 217 |
+
"model_max_length": 512,
|
| 218 |
+
"never_split": null,
|
| 219 |
+
"pad_token": "[PAD]",
|
| 220 |
+
"sep_token": "[SEP]",
|
| 221 |
+
"strip_accents": null,
|
| 222 |
+
"tokenize_chinese_chars": true,
|
| 223 |
+
"tokenizer_class": "BertTokenizer",
|
| 224 |
+
"unk_token": "[UNK]"
|
| 225 |
+
}
|
vocab.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|