Gustavo Henrique Ferreira Cruz commited on
Commit
6cda10e
·
verified ·
1 Parent(s): e05b41f

Upload folder using huggingface_hub

Browse files
added_tokens.json ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "<|FLANK_AFTER|>": 30541,
3
+ "<|FLANK_BEFORE|>": 30540,
4
+ "<|GENE|>": 30539,
5
+ "<|ORGANISM|>": 30538,
6
+ "<|SEQUENCE|>": 30537,
7
+ "[A]": 30522,
8
+ "[B]": 30532,
9
+ "[C]": 30523,
10
+ "[D]": 30533,
11
+ "[G]": 30524,
12
+ "[H]": 30534,
13
+ "[K]": 30530,
14
+ "[M]": 30531,
15
+ "[N]": 30536,
16
+ "[R]": 30526,
17
+ "[S]": 30528,
18
+ "[T]": 30525,
19
+ "[V]": 30535,
20
+ "[W]": 30529,
21
+ "[Y]": 30527
22
+ }
config.json ADDED
@@ -0,0 +1,26 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "architectures": [
3
+ "BertForSequenceClassification"
4
+ ],
5
+ "attention_probs_dropout_prob": 0.1,
6
+ "classifier_dropout": null,
7
+ "dtype": "float32",
8
+ "gradient_checkpointing": false,
9
+ "hidden_act": "gelu",
10
+ "hidden_dropout_prob": 0.1,
11
+ "hidden_size": 768,
12
+ "initializer_range": 0.02,
13
+ "intermediate_size": 3072,
14
+ "layer_norm_eps": 1e-12,
15
+ "max_position_embeddings": 512,
16
+ "model_type": "bert",
17
+ "num_attention_heads": 12,
18
+ "num_hidden_layers": 12,
19
+ "pad_token_id": 0,
20
+ "position_embedding_type": "absolute",
21
+ "problem_type": "single_label_classification",
22
+ "transformers_version": "4.57.0",
23
+ "type_vocab_size": 2,
24
+ "use_cache": true,
25
+ "vocab_size": 30542
26
+ }
model.safetensors ADDED
@@ -0,0 +1,3 @@
 
 
 
 
1
+ version https://git-lfs.github.com/spec/v1
2
+ oid sha256:41941891e427504eae9593301d3dab4e157b8fde8637969bd3140a0d7c54b4f8
3
+ size 438020088
special_tokens_map.json ADDED
@@ -0,0 +1,44 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "additional_special_tokens": [
3
+ {
4
+ "content": "<|SEQUENCE|>",
5
+ "lstrip": false,
6
+ "normalized": false,
7
+ "rstrip": false,
8
+ "single_word": false
9
+ },
10
+ {
11
+ "content": "<|ORGANISM|>",
12
+ "lstrip": false,
13
+ "normalized": false,
14
+ "rstrip": false,
15
+ "single_word": false
16
+ },
17
+ {
18
+ "content": "<|GENE|>",
19
+ "lstrip": false,
20
+ "normalized": false,
21
+ "rstrip": false,
22
+ "single_word": false
23
+ },
24
+ {
25
+ "content": "<|FLANK_BEFORE|>",
26
+ "lstrip": false,
27
+ "normalized": false,
28
+ "rstrip": false,
29
+ "single_word": false
30
+ },
31
+ {
32
+ "content": "<|FLANK_AFTER|>",
33
+ "lstrip": false,
34
+ "normalized": false,
35
+ "rstrip": false,
36
+ "single_word": false
37
+ }
38
+ ],
39
+ "cls_token": "[CLS]",
40
+ "mask_token": "[MASK]",
41
+ "pad_token": "[PAD]",
42
+ "sep_token": "[SEP]",
43
+ "unk_token": "[UNK]"
44
+ }
tokenizer_config.json ADDED
@@ -0,0 +1,225 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ {
2
+ "added_tokens_decoder": {
3
+ "0": {
4
+ "content": "[PAD]",
5
+ "lstrip": false,
6
+ "normalized": false,
7
+ "rstrip": false,
8
+ "single_word": false,
9
+ "special": true
10
+ },
11
+ "100": {
12
+ "content": "[UNK]",
13
+ "lstrip": false,
14
+ "normalized": false,
15
+ "rstrip": false,
16
+ "single_word": false,
17
+ "special": true
18
+ },
19
+ "101": {
20
+ "content": "[CLS]",
21
+ "lstrip": false,
22
+ "normalized": false,
23
+ "rstrip": false,
24
+ "single_word": false,
25
+ "special": true
26
+ },
27
+ "102": {
28
+ "content": "[SEP]",
29
+ "lstrip": false,
30
+ "normalized": false,
31
+ "rstrip": false,
32
+ "single_word": false,
33
+ "special": true
34
+ },
35
+ "103": {
36
+ "content": "[MASK]",
37
+ "lstrip": false,
38
+ "normalized": false,
39
+ "rstrip": false,
40
+ "single_word": false,
41
+ "special": true
42
+ },
43
+ "30522": {
44
+ "content": "[A]",
45
+ "lstrip": false,
46
+ "normalized": true,
47
+ "rstrip": false,
48
+ "single_word": false,
49
+ "special": false
50
+ },
51
+ "30523": {
52
+ "content": "[C]",
53
+ "lstrip": false,
54
+ "normalized": true,
55
+ "rstrip": false,
56
+ "single_word": false,
57
+ "special": false
58
+ },
59
+ "30524": {
60
+ "content": "[G]",
61
+ "lstrip": false,
62
+ "normalized": true,
63
+ "rstrip": false,
64
+ "single_word": false,
65
+ "special": false
66
+ },
67
+ "30525": {
68
+ "content": "[T]",
69
+ "lstrip": false,
70
+ "normalized": true,
71
+ "rstrip": false,
72
+ "single_word": false,
73
+ "special": false
74
+ },
75
+ "30526": {
76
+ "content": "[R]",
77
+ "lstrip": false,
78
+ "normalized": true,
79
+ "rstrip": false,
80
+ "single_word": false,
81
+ "special": false
82
+ },
83
+ "30527": {
84
+ "content": "[Y]",
85
+ "lstrip": false,
86
+ "normalized": true,
87
+ "rstrip": false,
88
+ "single_word": false,
89
+ "special": false
90
+ },
91
+ "30528": {
92
+ "content": "[S]",
93
+ "lstrip": false,
94
+ "normalized": true,
95
+ "rstrip": false,
96
+ "single_word": false,
97
+ "special": false
98
+ },
99
+ "30529": {
100
+ "content": "[W]",
101
+ "lstrip": false,
102
+ "normalized": true,
103
+ "rstrip": false,
104
+ "single_word": false,
105
+ "special": false
106
+ },
107
+ "30530": {
108
+ "content": "[K]",
109
+ "lstrip": false,
110
+ "normalized": true,
111
+ "rstrip": false,
112
+ "single_word": false,
113
+ "special": false
114
+ },
115
+ "30531": {
116
+ "content": "[M]",
117
+ "lstrip": false,
118
+ "normalized": true,
119
+ "rstrip": false,
120
+ "single_word": false,
121
+ "special": false
122
+ },
123
+ "30532": {
124
+ "content": "[B]",
125
+ "lstrip": false,
126
+ "normalized": true,
127
+ "rstrip": false,
128
+ "single_word": false,
129
+ "special": false
130
+ },
131
+ "30533": {
132
+ "content": "[D]",
133
+ "lstrip": false,
134
+ "normalized": true,
135
+ "rstrip": false,
136
+ "single_word": false,
137
+ "special": false
138
+ },
139
+ "30534": {
140
+ "content": "[H]",
141
+ "lstrip": false,
142
+ "normalized": true,
143
+ "rstrip": false,
144
+ "single_word": false,
145
+ "special": false
146
+ },
147
+ "30535": {
148
+ "content": "[V]",
149
+ "lstrip": false,
150
+ "normalized": true,
151
+ "rstrip": false,
152
+ "single_word": false,
153
+ "special": false
154
+ },
155
+ "30536": {
156
+ "content": "[N]",
157
+ "lstrip": false,
158
+ "normalized": true,
159
+ "rstrip": false,
160
+ "single_word": false,
161
+ "special": false
162
+ },
163
+ "30537": {
164
+ "content": "<|SEQUENCE|>",
165
+ "lstrip": false,
166
+ "normalized": false,
167
+ "rstrip": false,
168
+ "single_word": false,
169
+ "special": true
170
+ },
171
+ "30538": {
172
+ "content": "<|ORGANISM|>",
173
+ "lstrip": false,
174
+ "normalized": false,
175
+ "rstrip": false,
176
+ "single_word": false,
177
+ "special": true
178
+ },
179
+ "30539": {
180
+ "content": "<|GENE|>",
181
+ "lstrip": false,
182
+ "normalized": false,
183
+ "rstrip": false,
184
+ "single_word": false,
185
+ "special": true
186
+ },
187
+ "30540": {
188
+ "content": "<|FLANK_BEFORE|>",
189
+ "lstrip": false,
190
+ "normalized": false,
191
+ "rstrip": false,
192
+ "single_word": false,
193
+ "special": true
194
+ },
195
+ "30541": {
196
+ "content": "<|FLANK_AFTER|>",
197
+ "lstrip": false,
198
+ "normalized": false,
199
+ "rstrip": false,
200
+ "single_word": false,
201
+ "special": true
202
+ }
203
+ },
204
+ "additional_special_tokens": [
205
+ "<|SEQUENCE|>",
206
+ "<|ORGANISM|>",
207
+ "<|GENE|>",
208
+ "<|FLANK_BEFORE|>",
209
+ "<|FLANK_AFTER|>"
210
+ ],
211
+ "clean_up_tokenization_spaces": true,
212
+ "cls_token": "[CLS]",
213
+ "do_basic_tokenize": true,
214
+ "do_lower_case": false,
215
+ "extra_special_tokens": {},
216
+ "mask_token": "[MASK]",
217
+ "model_max_length": 512,
218
+ "never_split": null,
219
+ "pad_token": "[PAD]",
220
+ "sep_token": "[SEP]",
221
+ "strip_accents": null,
222
+ "tokenize_chinese_chars": true,
223
+ "tokenizer_class": "BertTokenizer",
224
+ "unk_token": "[UNK]"
225
+ }
vocab.txt ADDED
The diff for this file is too large to render. See raw diff