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Browse files- README.md +3 -1
- config.json +1 -1
README.md
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@@ -76,7 +76,7 @@ The model expects the following input format:
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- `<|GENE|>`: Optional gene name (truncated to a maximum of 10 characters in training).
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- `<|FLANK_BEFORE|>` and `<|FLANK_AFTER|>`: Optional upstream/downstream context sequences. Maximum of 25 nucleotides.
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The model should predict the
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---
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@@ -112,6 +112,8 @@ The model was trained on a processed version of GenBank sequences spanning multi
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| **Intron** | 0.9994 | 0.9994 | 0.9994 |
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| **Exon** | 0.9997 | 0.9997 | 0.9997 |
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### Notes
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- Metrics were computed on a full isolated test set.
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- `<|GENE|>`: Optional gene name (truncated to a maximum of 10 characters in training).
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- `<|FLANK_BEFORE|>` and `<|FLANK_AFTER|>`: Optional upstream/downstream context sequences. Maximum of 25 nucleotides.
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The model should predict the class label: 0 (Exon) or 1 (Intron).
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---
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| **Intron** | 0.9994 | 0.9994 | 0.9994 |
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| **Exon** | 0.9997 | 0.9997 | 0.9997 |
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---
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### Notes
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- Metrics were computed on a full isolated test set.
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config.json
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"attention_probs_dropout_prob": 0.1,
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"classifier_dropout": null,
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"custom_pipelines": {
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"
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"impl": "bert_exon_intron_classification.BERTExonIntronClassificationPipeline",
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"pt": ["BertForSequenceClassification"]
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}
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"attention_probs_dropout_prob": 0.1,
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"classifier_dropout": null,
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"custom_pipelines": {
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"bert-exon-intron-classification": {
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"impl": "bert_exon_intron_classification.BERTExonIntronClassificationPipeline",
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"pt": ["BertForSequenceClassification"]
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}
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