Gustavo Henrique Ferreira Cruz
commited on
Upload folder using huggingface_hub
Browse files- added_tokens.json +29 -0
- config.json +36 -0
- model.safetensors +3 -0
- special_tokens_map.json +59 -0
- tokenizer_config.json +284 -0
- vocab.txt +0 -0
added_tokens.json
ADDED
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{
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"<|FLANK_AFTER|>": 30546,
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"<|FLANK_BEFORE|>": 30545,
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"<|GENE|>": 30544,
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"<|ORGANISM|>": 30543,
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"<|PREDICTED_BEFORE|>": 30547,
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"<|SEQUENCE|>": 30542,
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"<|TARGET|>": 30548,
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"[DNA_A]": 30522,
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"[DNA_B]": 30532,
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"[DNA_C]": 30523,
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"[DNA_D]": 30533,
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"[DNA_G]": 30524,
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"[DNA_H]": 30534,
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"[DNA_INVALID]": 30541,
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"[DNA_K]": 30530,
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"[DNA_M]": 30531,
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"[DNA_N]": 30536,
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"[DNA_PAD]": 30539,
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"[DNA_R]": 30526,
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"[DNA_S]": 30528,
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"[DNA_T]": 30525,
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"[DNA_UNKNOWN]": 30540,
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"[DNA_V]": 30535,
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"[DNA_W]": 30529,
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"[DNA_Y]": 30527,
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"[EXON]": 30538,
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"[INTRON]": 30537
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}
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config.json
ADDED
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{
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"architectures": [
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"BertForSequenceClassification"
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],
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"attention_probs_dropout_prob": 0.1,
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"classifier_dropout": null,
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"dtype": "float32",
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"gradient_checkpointing": false,
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"hidden_act": "gelu",
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"hidden_dropout_prob": 0.1,
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"hidden_size": 768,
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"id2label": {
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"0": "LABEL_0",
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"1": "LABEL_1",
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"2": "LABEL_2"
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},
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"initializer_range": 0.02,
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"intermediate_size": 3072,
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"label2id": {
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"LABEL_0": 0,
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"LABEL_1": 1,
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"LABEL_2": 2
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},
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"layer_norm_eps": 1e-12,
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"max_position_embeddings": 512,
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"model_type": "bert",
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"num_attention_heads": 12,
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"num_hidden_layers": 12,
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"pad_token_id": 0,
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"position_embedding_type": "absolute",
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"problem_type": "single_label_classification",
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"transformers_version": "4.57.0",
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"type_vocab_size": 2,
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"use_cache": true,
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"vocab_size": 30549
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}
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model.safetensors
ADDED
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version https://git-lfs.github.com/spec/v1
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oid sha256:2150890396c0ad690ecd65ba704e34439694799e3e1b14c6a36549458392a2cd
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size 438044668
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special_tokens_map.json
ADDED
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{
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"additional_special_tokens": [
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{
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"content": "<|SEQUENCE|>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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{
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"content": "<|ORGANISM|>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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{
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"content": "<|GENE|>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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{
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"content": "<|FLANK_BEFORE|>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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{
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"content": "<|FLANK_AFTER|>",
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"lstrip": false,
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"normalized": false,
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"rstrip": false,
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"single_word": false
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},
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{
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"content": "<|PREDICTED_BEFORE|>",
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| 40 |
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"lstrip": false,
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| 41 |
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"normalized": false,
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| 42 |
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"rstrip": false,
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| 43 |
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"single_word": false
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| 44 |
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},
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{
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"content": "<|TARGET|>",
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| 47 |
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"lstrip": false,
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| 48 |
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"normalized": false,
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| 49 |
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"rstrip": false,
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| 50 |
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"single_word": false
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| 51 |
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}
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],
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"cls_token": "[CLS]",
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| 54 |
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"eos_token": "[DNA_PAD]",
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| 55 |
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"mask_token": "[MASK]",
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| 56 |
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"pad_token": "[DNA_PAD]",
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| 57 |
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"sep_token": "[SEP]",
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"unk_token": "[UNK]"
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}
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tokenizer_config.json
ADDED
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| 1 |
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{
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| 2 |
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"added_tokens_decoder": {
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| 3 |
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"0": {
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| 4 |
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"content": "[PAD]",
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| 5 |
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"lstrip": false,
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| 6 |
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"normalized": false,
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| 7 |
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"rstrip": false,
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| 8 |
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"single_word": false,
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| 9 |
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"special": true
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| 10 |
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},
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| 11 |
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"100": {
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| 12 |
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"content": "[UNK]",
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| 13 |
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"lstrip": false,
|
| 14 |
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"normalized": false,
|
| 15 |
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"rstrip": false,
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| 16 |
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"single_word": false,
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| 17 |
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"special": true
|
| 18 |
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},
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| 19 |
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"101": {
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| 20 |
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"content": "[CLS]",
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| 21 |
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"lstrip": false,
|
| 22 |
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"normalized": false,
|
| 23 |
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"rstrip": false,
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| 24 |
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"single_word": false,
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| 25 |
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"special": true
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| 26 |
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},
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| 27 |
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"102": {
|
| 28 |
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"content": "[SEP]",
|
| 29 |
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"lstrip": false,
|
| 30 |
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"normalized": false,
|
| 31 |
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"rstrip": false,
|
| 32 |
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"single_word": false,
|
| 33 |
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"special": true
|
| 34 |
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},
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| 35 |
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"103": {
|
| 36 |
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"content": "[MASK]",
|
| 37 |
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"lstrip": false,
|
| 38 |
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"normalized": false,
|
| 39 |
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"rstrip": false,
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| 40 |
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"single_word": false,
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| 41 |
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"special": true
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| 42 |
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},
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| 43 |
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"30522": {
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| 44 |
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"content": "[DNA_A]",
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| 45 |
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"lstrip": false,
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| 46 |
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"normalized": true,
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| 47 |
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"rstrip": false,
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| 48 |
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"single_word": false,
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| 49 |
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"special": false
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| 50 |
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},
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| 51 |
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"30523": {
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| 52 |
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"content": "[DNA_C]",
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| 53 |
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"lstrip": false,
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| 54 |
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"normalized": true,
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| 55 |
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"rstrip": false,
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| 56 |
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"single_word": false,
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| 57 |
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"special": false
|
| 58 |
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},
|
| 59 |
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"30524": {
|
| 60 |
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"content": "[DNA_G]",
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| 61 |
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"lstrip": false,
|
| 62 |
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"normalized": true,
|
| 63 |
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"rstrip": false,
|
| 64 |
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"single_word": false,
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| 65 |
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"special": false
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| 66 |
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},
|
| 67 |
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"30525": {
|
| 68 |
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"content": "[DNA_T]",
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| 69 |
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"lstrip": false,
|
| 70 |
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"normalized": true,
|
| 71 |
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"rstrip": false,
|
| 72 |
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"single_word": false,
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| 73 |
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"special": false
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| 74 |
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},
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| 75 |
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"30526": {
|
| 76 |
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"content": "[DNA_R]",
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| 77 |
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"lstrip": false,
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| 78 |
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"normalized": true,
|
| 79 |
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"rstrip": false,
|
| 80 |
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"single_word": false,
|
| 81 |
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"special": false
|
| 82 |
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},
|
| 83 |
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"30527": {
|
| 84 |
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"content": "[DNA_Y]",
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| 85 |
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"lstrip": false,
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| 86 |
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"normalized": true,
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| 87 |
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"rstrip": false,
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| 88 |
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"single_word": false,
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| 89 |
+
"special": false
|
| 90 |
+
},
|
| 91 |
+
"30528": {
|
| 92 |
+
"content": "[DNA_S]",
|
| 93 |
+
"lstrip": false,
|
| 94 |
+
"normalized": true,
|
| 95 |
+
"rstrip": false,
|
| 96 |
+
"single_word": false,
|
| 97 |
+
"special": false
|
| 98 |
+
},
|
| 99 |
+
"30529": {
|
| 100 |
+
"content": "[DNA_W]",
|
| 101 |
+
"lstrip": false,
|
| 102 |
+
"normalized": true,
|
| 103 |
+
"rstrip": false,
|
| 104 |
+
"single_word": false,
|
| 105 |
+
"special": false
|
| 106 |
+
},
|
| 107 |
+
"30530": {
|
| 108 |
+
"content": "[DNA_K]",
|
| 109 |
+
"lstrip": false,
|
| 110 |
+
"normalized": true,
|
| 111 |
+
"rstrip": false,
|
| 112 |
+
"single_word": false,
|
| 113 |
+
"special": false
|
| 114 |
+
},
|
| 115 |
+
"30531": {
|
| 116 |
+
"content": "[DNA_M]",
|
| 117 |
+
"lstrip": false,
|
| 118 |
+
"normalized": true,
|
| 119 |
+
"rstrip": false,
|
| 120 |
+
"single_word": false,
|
| 121 |
+
"special": false
|
| 122 |
+
},
|
| 123 |
+
"30532": {
|
| 124 |
+
"content": "[DNA_B]",
|
| 125 |
+
"lstrip": false,
|
| 126 |
+
"normalized": true,
|
| 127 |
+
"rstrip": false,
|
| 128 |
+
"single_word": false,
|
| 129 |
+
"special": false
|
| 130 |
+
},
|
| 131 |
+
"30533": {
|
| 132 |
+
"content": "[DNA_D]",
|
| 133 |
+
"lstrip": false,
|
| 134 |
+
"normalized": true,
|
| 135 |
+
"rstrip": false,
|
| 136 |
+
"single_word": false,
|
| 137 |
+
"special": false
|
| 138 |
+
},
|
| 139 |
+
"30534": {
|
| 140 |
+
"content": "[DNA_H]",
|
| 141 |
+
"lstrip": false,
|
| 142 |
+
"normalized": true,
|
| 143 |
+
"rstrip": false,
|
| 144 |
+
"single_word": false,
|
| 145 |
+
"special": false
|
| 146 |
+
},
|
| 147 |
+
"30535": {
|
| 148 |
+
"content": "[DNA_V]",
|
| 149 |
+
"lstrip": false,
|
| 150 |
+
"normalized": true,
|
| 151 |
+
"rstrip": false,
|
| 152 |
+
"single_word": false,
|
| 153 |
+
"special": false
|
| 154 |
+
},
|
| 155 |
+
"30536": {
|
| 156 |
+
"content": "[DNA_N]",
|
| 157 |
+
"lstrip": false,
|
| 158 |
+
"normalized": true,
|
| 159 |
+
"rstrip": false,
|
| 160 |
+
"single_word": false,
|
| 161 |
+
"special": false
|
| 162 |
+
},
|
| 163 |
+
"30537": {
|
| 164 |
+
"content": "[INTRON]",
|
| 165 |
+
"lstrip": false,
|
| 166 |
+
"normalized": true,
|
| 167 |
+
"rstrip": false,
|
| 168 |
+
"single_word": false,
|
| 169 |
+
"special": false
|
| 170 |
+
},
|
| 171 |
+
"30538": {
|
| 172 |
+
"content": "[EXON]",
|
| 173 |
+
"lstrip": false,
|
| 174 |
+
"normalized": true,
|
| 175 |
+
"rstrip": false,
|
| 176 |
+
"single_word": false,
|
| 177 |
+
"special": false
|
| 178 |
+
},
|
| 179 |
+
"30539": {
|
| 180 |
+
"content": "[DNA_PAD]",
|
| 181 |
+
"lstrip": false,
|
| 182 |
+
"normalized": true,
|
| 183 |
+
"rstrip": false,
|
| 184 |
+
"single_word": false,
|
| 185 |
+
"special": false
|
| 186 |
+
},
|
| 187 |
+
"30540": {
|
| 188 |
+
"content": "[DNA_UNKNOWN]",
|
| 189 |
+
"lstrip": false,
|
| 190 |
+
"normalized": true,
|
| 191 |
+
"rstrip": false,
|
| 192 |
+
"single_word": false,
|
| 193 |
+
"special": false
|
| 194 |
+
},
|
| 195 |
+
"30541": {
|
| 196 |
+
"content": "[DNA_INVALID]",
|
| 197 |
+
"lstrip": false,
|
| 198 |
+
"normalized": true,
|
| 199 |
+
"rstrip": false,
|
| 200 |
+
"single_word": false,
|
| 201 |
+
"special": false
|
| 202 |
+
},
|
| 203 |
+
"30542": {
|
| 204 |
+
"content": "<|SEQUENCE|>",
|
| 205 |
+
"lstrip": false,
|
| 206 |
+
"normalized": false,
|
| 207 |
+
"rstrip": false,
|
| 208 |
+
"single_word": false,
|
| 209 |
+
"special": true
|
| 210 |
+
},
|
| 211 |
+
"30543": {
|
| 212 |
+
"content": "<|ORGANISM|>",
|
| 213 |
+
"lstrip": false,
|
| 214 |
+
"normalized": false,
|
| 215 |
+
"rstrip": false,
|
| 216 |
+
"single_word": false,
|
| 217 |
+
"special": true
|
| 218 |
+
},
|
| 219 |
+
"30544": {
|
| 220 |
+
"content": "<|GENE|>",
|
| 221 |
+
"lstrip": false,
|
| 222 |
+
"normalized": false,
|
| 223 |
+
"rstrip": false,
|
| 224 |
+
"single_word": false,
|
| 225 |
+
"special": true
|
| 226 |
+
},
|
| 227 |
+
"30545": {
|
| 228 |
+
"content": "<|FLANK_BEFORE|>",
|
| 229 |
+
"lstrip": false,
|
| 230 |
+
"normalized": false,
|
| 231 |
+
"rstrip": false,
|
| 232 |
+
"single_word": false,
|
| 233 |
+
"special": true
|
| 234 |
+
},
|
| 235 |
+
"30546": {
|
| 236 |
+
"content": "<|FLANK_AFTER|>",
|
| 237 |
+
"lstrip": false,
|
| 238 |
+
"normalized": false,
|
| 239 |
+
"rstrip": false,
|
| 240 |
+
"single_word": false,
|
| 241 |
+
"special": true
|
| 242 |
+
},
|
| 243 |
+
"30547": {
|
| 244 |
+
"content": "<|PREDICTED_BEFORE|>",
|
| 245 |
+
"lstrip": false,
|
| 246 |
+
"normalized": false,
|
| 247 |
+
"rstrip": false,
|
| 248 |
+
"single_word": false,
|
| 249 |
+
"special": true
|
| 250 |
+
},
|
| 251 |
+
"30548": {
|
| 252 |
+
"content": "<|TARGET|>",
|
| 253 |
+
"lstrip": false,
|
| 254 |
+
"normalized": false,
|
| 255 |
+
"rstrip": false,
|
| 256 |
+
"single_word": false,
|
| 257 |
+
"special": true
|
| 258 |
+
}
|
| 259 |
+
},
|
| 260 |
+
"additional_special_tokens": [
|
| 261 |
+
"<|SEQUENCE|>",
|
| 262 |
+
"<|ORGANISM|>",
|
| 263 |
+
"<|GENE|>",
|
| 264 |
+
"<|FLANK_BEFORE|>",
|
| 265 |
+
"<|FLANK_AFTER|>",
|
| 266 |
+
"<|PREDICTED_BEFORE|>",
|
| 267 |
+
"<|TARGET|>"
|
| 268 |
+
],
|
| 269 |
+
"clean_up_tokenization_spaces": true,
|
| 270 |
+
"cls_token": "[CLS]",
|
| 271 |
+
"do_basic_tokenize": true,
|
| 272 |
+
"do_lower_case": false,
|
| 273 |
+
"eos_token": "[DNA_PAD]",
|
| 274 |
+
"extra_special_tokens": {},
|
| 275 |
+
"mask_token": "[MASK]",
|
| 276 |
+
"model_max_length": 512,
|
| 277 |
+
"never_split": null,
|
| 278 |
+
"pad_token": "[DNA_PAD]",
|
| 279 |
+
"sep_token": "[SEP]",
|
| 280 |
+
"strip_accents": null,
|
| 281 |
+
"tokenize_chinese_chars": true,
|
| 282 |
+
"tokenizer_class": "BertTokenizer",
|
| 283 |
+
"unk_token": "[UNK]"
|
| 284 |
+
}
|
vocab.txt
ADDED
|
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|
|
|