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license: cc-by-nc-nd-4.0
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---
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license: cc-by-nc-nd-4.0
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tags:
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- spatial-transcriptomics
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- pathology
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- histology
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- deep-learning
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- pytorch
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---
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# HistoPrism: Unlocking Functional Pathway Analysis from Pan-Cancer Histology via Gene Expression Prediction
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<div align="center">
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[](https://arxiv.org/abs/2601.21560)
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[]()
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[]()
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</div>
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**HistoPrism** is a deep learning model designed to bridge the gap between histology images (H&E) and spatial gene expression.
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Check out the details in the [github repo](https://github.com/susuhu/HistoPrism).
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This repository contains the weights for the checkpoints in the paper trained on the HEST v1.1.0 dataset.
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## 📄 Paper
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**Title:** HistoPrism: Unlocking Functional Pathway Analysis from Pan-Cancer Histology via Gene Expression Prediction
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**Authors:** Hu, Susu and Zeng, Qinghe and Bhasker, Nithya and Kather, Jakob Nicholas and Speidel, Stefanie
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**Link:** [ICLR 2026 arXiv](https://arxiv.org/abs/2601.21560)
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## 💻 Usage
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To load this checkpoint, ensure you have the HistoPrism codebase or compatible model definition.
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```python
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from huggingface_hub import hf_hub_download
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import torch
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# Download the model checkpoint
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checkpoint_path = hf_hub_download(repo_id="HuSusu/HistoPrism", filename="HistoPrism_split0.ckpt")
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# Load weights (Pseudo-code: replace with your actual model class)
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# model = HistoPrism(config=...)
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# checkpoint = torch.load(path, map_location=map_location)
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# model.load_state_dict(checkpoint["model_state"])
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