config.json

{
  "_name_or_path": "michiyasunaga/BioLinkBERT-large",
  "architectures": [
    "BioNExtTaggerModel"
  ],
  "args_random_seed": 42,
  "attention_probs_dropout_prob": 0.1,
  "augmentation": "unk",
  "auto_map": {
    "AutoConfig": "configuration_bionexttager.BioNExtTaggerConfig",
    "AutoModel": "modeling_bionexttagger.BioNExtTaggerModel"
  },
  "classifier_dropout": null,
  "context_size": 2,
  "crf_reduction": "mean",
  "freeze": false,
  "gradient_checkpointing": false,
  "hidden_act": "gelu",
  "hidden_dropout_prob": 0.1,
  "hidden_size": 1024,
  "id2label": {
    "0": "O",
    "1": "B-GeneOrGeneProduct",
    "2": "I-GeneOrGeneProduct",
    "3": "B-DiseaseOrPhenotypicFeature",
    "4": "I-DiseaseOrPhenotypicFeature",
    "5": "B-ChemicalEntity",
    "6": "I-ChemicalEntity",
    "7": "B-SequenceVariant",
    "8": "I-SequenceVariant",
    "9": "B-OrganismTaxon",
    "10": "I-OrganismTaxon",
    "11": "B-CellLine",
    "12": "I-CellLine"
  },
  "initializer_range": 0.02,
  "intermediate_size": 4096,
  "label2id": {
    "B-CellLine": 11,
    "B-ChemicalEntity": 5,
    "B-DiseaseOrPhenotypicFeature": 3,
    "B-GeneOrGeneProduct": 1,
    "B-OrganismTaxon": 9,
    "B-SequenceVariant": 7,
    "I-CellLine": 12,
    "I-ChemicalEntity": 6,
    "I-DiseaseOrPhenotypicFeature": 4,
    "I-GeneOrGeneProduct": 2,
    "I-OrganismTaxon": 10,
    "I-SequenceVariant": 8,
    "O": 0
  },
  "layer_norm_eps": 1e-12,
  "max_position_embeddings": 512,
  "model_type": "crf-tagger",
  "model_type_arch": "dense",
  "num_attention_heads": 16,
  "num_hidden_layers": 24,
  "p_augmentation": 0.5,
  "pad_token_id": 0,
  "percentage_tags": 0.75,
  "position_embedding_type": "absolute",
  "torch_dtype": "float32",
  "transformers_version": "4.37.2",
  "type_vocab_size": 2,
  "use_cache": true,
  "version": "0.1.2",
  "vocab_size": 28895
}