| """Algorithms to characterize the number of triangles in a graph.""" |
|
|
| from collections import Counter |
| from itertools import chain, combinations |
|
|
| import networkx as nx |
| from networkx.utils import not_implemented_for |
|
|
| __all__ = [ |
| "triangles", |
| "all_triangles", |
| "average_clustering", |
| "clustering", |
| "transitivity", |
| "square_clustering", |
| "generalized_degree", |
| ] |
|
|
|
|
| @not_implemented_for("directed") |
| @nx._dispatchable |
| def triangles(G, nodes=None): |
| """Compute the number of triangles. |
| |
| Finds the number of triangles that include a node as one vertex. |
| |
| Parameters |
| ---------- |
| G : graph |
| A networkx graph |
| |
| nodes : node, iterable of nodes, or None (default=None) |
| If a singleton node, return the number of triangles for that node. |
| If an iterable, compute the number of triangles for each of those nodes. |
| If `None` (the default) compute the number of triangles for all nodes in `G`. |
| |
| Returns |
| ------- |
| out : dict or int |
| If `nodes` is a container of nodes, returns number of triangles keyed by node (dict). |
| If `nodes` is a specific node, returns number of triangles for the node (int). |
| |
| Examples |
| -------- |
| >>> G = nx.complete_graph(5) |
| >>> print(nx.triangles(G, 0)) |
| 6 |
| >>> print(nx.triangles(G)) |
| {0: 6, 1: 6, 2: 6, 3: 6, 4: 6} |
| >>> print(list(nx.triangles(G, [0, 1]).values())) |
| [6, 6] |
| |
| The total number of unique triangles in `G` can be determined by summing |
| the number of triangles for each node and dividing by 3 (because a given |
| triangle gets counted three times, once for each of its nodes). |
| |
| >>> sum(nx.triangles(G).values()) // 3 |
| 10 |
| |
| Notes |
| ----- |
| Self loops are ignored. |
| |
| """ |
| if nodes is not None: |
| |
| if nodes in G: |
| return next(_triangles_and_degree_iter(G, nodes))[2] // 2 |
|
|
| |
| |
| return {v: t // 2 for v, d, t, _ in _triangles_and_degree_iter(G, nodes)} |
|
|
| |
|
|
| |
| |
| later_nbrs = {} |
|
|
| |
| for node, neighbors in G.adjacency(): |
| later_nbrs[node] = {n for n in neighbors if n not in later_nbrs and n != node} |
|
|
| |
| |
| triangle_counts = Counter(dict.fromkeys(G, 0)) |
| for node1, neighbors in later_nbrs.items(): |
| for node2 in neighbors: |
| third_nodes = neighbors & later_nbrs[node2] |
| m = len(third_nodes) |
| triangle_counts[node1] += m |
| triangle_counts[node2] += m |
| triangle_counts.update(third_nodes) |
|
|
| return dict(triangle_counts) |
|
|
|
|
| @not_implemented_for("multigraph") |
| def _triangles_and_degree_iter(G, nodes=None): |
| """Return an iterator of (node, degree, triangles, generalized degree). |
| |
| This double counts triangles so you may want to divide by 2. |
| See degree(), triangles() and generalized_degree() for definitions |
| and details. |
| |
| """ |
| if nodes is None: |
| nodes_nbrs = G.adj.items() |
| else: |
| nodes_nbrs = ((n, G[n]) for n in G.nbunch_iter(nodes)) |
|
|
| for v, v_nbrs in nodes_nbrs: |
| vs = set(v_nbrs) - {v} |
| gen_degree = Counter(len(vs & (set(G[w]) - {w})) for w in vs) |
| ntriangles = sum(k * val for k, val in gen_degree.items()) |
| yield (v, len(vs), ntriangles, gen_degree) |
|
|
|
|
| @not_implemented_for("multigraph") |
| def _weighted_triangles_and_degree_iter(G, nodes=None, weight="weight"): |
| """Return an iterator of (node, degree, weighted_triangles). |
| |
| Used for weighted clustering. |
| Note: this returns the geometric average weight of edges in the triangle. |
| Also, each triangle is counted twice (each direction). |
| So you may want to divide by 2. |
| |
| """ |
| import numpy as np |
|
|
| if weight is None or G.number_of_edges() == 0: |
| max_weight = 1 |
| else: |
| max_weight = max(d.get(weight, 1) for u, v, d in G.edges(data=True)) |
| if nodes is None: |
| nodes_nbrs = G.adj.items() |
| else: |
| nodes_nbrs = ((n, G[n]) for n in G.nbunch_iter(nodes)) |
|
|
| def wt(u, v): |
| return G[u][v].get(weight, 1) / max_weight |
|
|
| for i, nbrs in nodes_nbrs: |
| inbrs = set(nbrs) - {i} |
| weighted_triangles = 0 |
| seen = set() |
| for j in inbrs: |
| seen.add(j) |
| |
| jnbrs = set(G[j]) - seen |
| |
| |
| wij = wt(i, j) |
| weighted_triangles += np.cbrt( |
| [(wij * wt(j, k) * wt(k, i)) for k in inbrs & jnbrs] |
| ).sum() |
| yield (i, len(inbrs), 2 * float(weighted_triangles)) |
|
|
|
|
| @not_implemented_for("multigraph") |
| def _directed_triangles_and_degree_iter(G, nodes=None): |
| """Return an iterator of |
| (node, total_degree, reciprocal_degree, directed_triangles). |
| |
| Used for directed clustering. |
| Note that unlike `_triangles_and_degree_iter()`, this function counts |
| directed triangles so does not count triangles twice. |
| |
| """ |
| nodes_nbrs = ((n, G._pred[n], G._succ[n]) for n in G.nbunch_iter(nodes)) |
|
|
| for i, preds, succs in nodes_nbrs: |
| ipreds = set(preds) - {i} |
| isuccs = set(succs) - {i} |
|
|
| directed_triangles = 0 |
| for j in chain(ipreds, isuccs): |
| jpreds = set(G._pred[j]) - {j} |
| jsuccs = set(G._succ[j]) - {j} |
| directed_triangles += sum( |
| 1 |
| for k in chain( |
| (ipreds & jpreds), |
| (ipreds & jsuccs), |
| (isuccs & jpreds), |
| (isuccs & jsuccs), |
| ) |
| ) |
| dtotal = len(ipreds) + len(isuccs) |
| dbidirectional = len(ipreds & isuccs) |
| yield (i, dtotal, dbidirectional, directed_triangles) |
|
|
|
|
| @not_implemented_for("multigraph") |
| def _directed_weighted_triangles_and_degree_iter(G, nodes=None, weight="weight"): |
| """Return an iterator of |
| (node, total_degree, reciprocal_degree, directed_weighted_triangles). |
| |
| Used for directed weighted clustering. |
| Note that unlike `_weighted_triangles_and_degree_iter()`, this function counts |
| directed triangles so does not count triangles twice. |
| |
| """ |
| import numpy as np |
|
|
| if weight is None or G.number_of_edges() == 0: |
| max_weight = 1 |
| else: |
| max_weight = max(d.get(weight, 1) for u, v, d in G.edges(data=True)) |
|
|
| nodes_nbrs = ((n, G._pred[n], G._succ[n]) for n in G.nbunch_iter(nodes)) |
|
|
| def wt(u, v): |
| return G[u][v].get(weight, 1) / max_weight |
|
|
| for i, preds, succs in nodes_nbrs: |
| ipreds = set(preds) - {i} |
| isuccs = set(succs) - {i} |
|
|
| directed_triangles = 0 |
| for j in ipreds: |
| jpreds = set(G._pred[j]) - {j} |
| jsuccs = set(G._succ[j]) - {j} |
| directed_triangles += np.cbrt( |
| [(wt(j, i) * wt(k, i) * wt(k, j)) for k in ipreds & jpreds] |
| ).sum() |
| directed_triangles += np.cbrt( |
| [(wt(j, i) * wt(k, i) * wt(j, k)) for k in ipreds & jsuccs] |
| ).sum() |
| directed_triangles += np.cbrt( |
| [(wt(j, i) * wt(i, k) * wt(k, j)) for k in isuccs & jpreds] |
| ).sum() |
| directed_triangles += np.cbrt( |
| [(wt(j, i) * wt(i, k) * wt(j, k)) for k in isuccs & jsuccs] |
| ).sum() |
|
|
| for j in isuccs: |
| jpreds = set(G._pred[j]) - {j} |
| jsuccs = set(G._succ[j]) - {j} |
| directed_triangles += np.cbrt( |
| [(wt(i, j) * wt(k, i) * wt(k, j)) for k in ipreds & jpreds] |
| ).sum() |
| directed_triangles += np.cbrt( |
| [(wt(i, j) * wt(k, i) * wt(j, k)) for k in ipreds & jsuccs] |
| ).sum() |
| directed_triangles += np.cbrt( |
| [(wt(i, j) * wt(i, k) * wt(k, j)) for k in isuccs & jpreds] |
| ).sum() |
| directed_triangles += np.cbrt( |
| [(wt(i, j) * wt(i, k) * wt(j, k)) for k in isuccs & jsuccs] |
| ).sum() |
|
|
| dtotal = len(ipreds) + len(isuccs) |
| dbidirectional = len(ipreds & isuccs) |
| yield (i, dtotal, dbidirectional, float(directed_triangles)) |
|
|
|
|
| @not_implemented_for("directed") |
| @nx._dispatchable |
| def all_triangles(G, nbunch=None): |
| """ |
| Yields all unique triangles in an undirected graph. |
| |
| A triangle is a set of three distinct nodes where each node is connected to |
| the other two. |
| |
| Parameters |
| ---------- |
| G : NetworkX graph |
| An undirected graph. |
| |
| nbunch : node, iterable of nodes, or None (default=None) |
| If a node or iterable of nodes, only triangles involving at least one |
| node in `nbunch` are yielded. |
| If ``None``, yields all unique triangles in the graph. |
| |
| Yields |
| ------ |
| tuple |
| A tuple of three nodes forming a triangle ``(u, v, w)``. |
| |
| Examples |
| -------- |
| >>> G = nx.complete_graph(4) |
| >>> sorted([sorted(t) for t in all_triangles(G)]) |
| [[0, 1, 2], [0, 1, 3], [0, 2, 3], [1, 2, 3]] |
| |
| Notes |
| ----- |
| This algorithm ensures each triangle is yielded once using an internal node ordering. |
| In multigraphs, triangles are identified by their unique set of nodes, |
| ignoring multiple edges between the same nodes. Self-loops are ignored. |
| Runs in ``O(m * d)`` time in the worst case, where ``m`` the number of edges |
| and ``d`` the maximum degree. |
| |
| See Also |
| -------- |
| :func:`~networkx.algorithms.triads.all_triads` : related function for directed graphs |
| """ |
| if nbunch is None: |
| nbunch = relevant_nodes = G |
| else: |
| nbunch = dict.fromkeys(G.nbunch_iter(nbunch)) |
| relevant_nodes = chain( |
| nbunch, |
| (nbr for node in nbunch for nbr in G.neighbors(node) if nbr not in nbunch), |
| ) |
|
|
| node_to_id = {node: i for i, node in enumerate(relevant_nodes)} |
|
|
| for u in nbunch: |
| u_id = node_to_id[u] |
| u_nbrs = G._adj[u].keys() |
| for v in u_nbrs: |
| v_id = node_to_id.get(v, -1) |
| if v_id <= u_id: |
| continue |
| v_nbrs = G._adj[v].keys() |
| for w in v_nbrs & u_nbrs: |
| if node_to_id.get(w, -1) > v_id: |
| yield u, v, w |
|
|
|
|
| @nx._dispatchable(edge_attrs="weight") |
| def average_clustering(G, nodes=None, weight=None, count_zeros=True): |
| r"""Compute the average clustering coefficient for the graph G. |
| |
| The clustering coefficient for the graph is the average, |
| |
| .. math:: |
| |
| C = \frac{1}{n}\sum_{v \in G} c_v, |
| |
| where :math:`n` is the number of nodes in `G`. |
| |
| Parameters |
| ---------- |
| G : graph |
| |
| nodes : container of nodes, optional (default=all nodes in G) |
| Compute average clustering for nodes in this container. |
| |
| weight : string or None, optional (default=None) |
| The edge attribute that holds the numerical value used as a weight. |
| If None, then each edge has weight 1. |
| |
| count_zeros : bool |
| If False include only the nodes with nonzero clustering in the average. |
| |
| Returns |
| ------- |
| avg : float |
| Average clustering |
| |
| Examples |
| -------- |
| >>> G = nx.complete_graph(5) |
| >>> print(nx.average_clustering(G)) |
| 1.0 |
| |
| Notes |
| ----- |
| This is a space saving routine; it might be faster |
| to use the clustering function to get a list and then take the average. |
| |
| Self loops are ignored. |
| |
| References |
| ---------- |
| .. [1] Generalizations of the clustering coefficient to weighted |
| complex networks by J. Saramäki, M. Kivelä, J.-P. Onnela, |
| K. Kaski, and J. Kertész, Physical Review E, 75 027105 (2007). |
| http://jponnela.com/web_documents/a9.pdf |
| .. [2] Marcus Kaiser, Mean clustering coefficients: the role of isolated |
| nodes and leafs on clustering measures for small-world networks. |
| https://arxiv.org/abs/0802.2512 |
| """ |
| c = clustering(G, nodes, weight=weight).values() |
| if not count_zeros: |
| c = [v for v in c if abs(v) > 0] |
| return sum(c) / len(c) |
|
|
|
|
| @nx._dispatchable(edge_attrs="weight") |
| def clustering(G, nodes=None, weight=None): |
| r"""Compute the clustering coefficient for nodes. |
| |
| For unweighted graphs, the clustering of a node :math:`u` |
| is the fraction of possible triangles through that node that exist, |
| |
| .. math:: |
| |
| c_u = \frac{2 T(u)}{deg(u)(deg(u)-1)}, |
| |
| where :math:`T(u)` is the number of triangles through node :math:`u` and |
| :math:`deg(u)` is the degree of :math:`u`. |
| |
| For weighted graphs, there are several ways to define clustering [1]_. |
| the one used here is defined |
| as the geometric average of the subgraph edge weights [2]_, |
| |
| .. math:: |
| |
| c_u = \frac{1}{deg(u)(deg(u)-1))} |
| \sum_{vw} (\hat{w}_{uv} \hat{w}_{uw} \hat{w}_{vw})^{1/3}. |
| |
| The edge weights :math:`\hat{w}_{uv}` are normalized by the maximum weight |
| in the network :math:`\hat{w}_{uv} = w_{uv}/\max(w)`. |
| |
| The value of :math:`c_u` is assigned to 0 if :math:`deg(u) < 2`. |
| |
| Additionally, this weighted definition has been generalized to support negative edge weights [3]_. |
| |
| For directed graphs, the clustering is similarly defined as the fraction |
| of all possible directed triangles or geometric average of the subgraph |
| edge weights for unweighted and weighted directed graph respectively [4]_. |
| |
| .. math:: |
| |
| c_u = \frac{T(u)}{2(deg^{tot}(u)(deg^{tot}(u)-1) - 2deg^{\leftrightarrow}(u))}, |
| |
| where :math:`T(u)` is the number of directed triangles through node |
| :math:`u`, :math:`deg^{tot}(u)` is the sum of in degree and out degree of |
| :math:`u` and :math:`deg^{\leftrightarrow}(u)` is the reciprocal degree of |
| :math:`u`. |
| |
| |
| Parameters |
| ---------- |
| G : graph |
| |
| nodes : node, iterable of nodes, or None (default=None) |
| If a singleton node, return the number of triangles for that node. |
| If an iterable, compute the number of triangles for each of those nodes. |
| If `None` (the default) compute the number of triangles for all nodes in `G`. |
| |
| weight : string or None, optional (default=None) |
| The edge attribute that holds the numerical value used as a weight. |
| If None, then each edge has weight 1. |
| |
| Returns |
| ------- |
| out : float, or dictionary |
| Clustering coefficient at specified nodes |
| |
| Examples |
| -------- |
| >>> G = nx.complete_graph(5) |
| >>> print(nx.clustering(G, 0)) |
| 1.0 |
| >>> print(nx.clustering(G)) |
| {0: 1.0, 1: 1.0, 2: 1.0, 3: 1.0, 4: 1.0} |
| |
| Notes |
| ----- |
| Self loops are ignored. |
| |
| References |
| ---------- |
| .. [1] Generalizations of the clustering coefficient to weighted |
| complex networks by J. Saramäki, M. Kivelä, J.-P. Onnela, |
| K. Kaski, and J. Kertész, Physical Review E, 75 027105 (2007). |
| http://jponnela.com/web_documents/a9.pdf |
| .. [2] Intensity and coherence of motifs in weighted complex |
| networks by J. P. Onnela, J. Saramäki, J. Kertész, and K. Kaski, |
| Physical Review E, 71(6), 065103 (2005). |
| .. [3] Generalization of Clustering Coefficients to Signed Correlation Networks |
| by G. Costantini and M. Perugini, PloS one, 9(2), e88669 (2014). |
| .. [4] Clustering in complex directed networks by G. Fagiolo, |
| Physical Review E, 76(2), 026107 (2007). |
| """ |
| if G.is_directed(): |
| if weight is not None: |
| td_iter = _directed_weighted_triangles_and_degree_iter(G, nodes, weight) |
| clusterc = { |
| v: 0 if t == 0 else t / ((dt * (dt - 1) - 2 * db) * 2) |
| for v, dt, db, t in td_iter |
| } |
| else: |
| td_iter = _directed_triangles_and_degree_iter(G, nodes) |
| clusterc = { |
| v: 0 if t == 0 else t / ((dt * (dt - 1) - 2 * db) * 2) |
| for v, dt, db, t in td_iter |
| } |
| else: |
| |
| if weight is not None: |
| td_iter = _weighted_triangles_and_degree_iter(G, nodes, weight) |
| clusterc = {v: 0 if t == 0 else t / (d * (d - 1)) for v, d, t in td_iter} |
| else: |
| td_iter = _triangles_and_degree_iter(G, nodes) |
| clusterc = {v: 0 if t == 0 else t / (d * (d - 1)) for v, d, t, _ in td_iter} |
| if nodes in G: |
| |
| return clusterc[nodes] |
| return clusterc |
|
|
|
|
| @nx._dispatchable |
| def transitivity(G): |
| r"""Compute graph transitivity, the fraction of all possible triangles |
| present in G. |
| |
| Possible triangles are identified by the number of "triads" |
| (two edges with a shared vertex). |
| |
| The transitivity is |
| |
| .. math:: |
| |
| T = 3\frac{\#triangles}{\#triads}. |
| |
| Parameters |
| ---------- |
| G : graph |
| |
| Returns |
| ------- |
| out : float |
| Transitivity |
| |
| Notes |
| ----- |
| Self loops are ignored. |
| |
| Examples |
| -------- |
| >>> G = nx.complete_graph(5) |
| >>> print(nx.transitivity(G)) |
| 1.0 |
| """ |
| triangles_contri = [ |
| (t, d * (d - 1)) for v, d, t, _ in _triangles_and_degree_iter(G) |
| ] |
| |
| if len(triangles_contri) == 0: |
| return 0 |
| triangles, contri = map(sum, zip(*triangles_contri)) |
| return 0 if triangles == 0 else triangles / contri |
|
|
|
|
| @nx._dispatchable |
| def square_clustering(G, nodes=None): |
| r"""Compute the squares clustering coefficient for nodes. |
| |
| For each node return the fraction of possible squares that exist at |
| the node [1]_ |
| |
| .. math:: |
| C_4(v) = \frac{ \sum_{u=1}^{k_v} |
| \sum_{w=u+1}^{k_v} q_v(u,w) }{ \sum_{u=1}^{k_v} |
| \sum_{w=u+1}^{k_v} [a_v(u,w) + q_v(u,w)]}, |
| |
| where :math:`q_v(u,w)` are the number of common neighbors of :math:`u` and |
| :math:`w` other than :math:`v` (ie squares), and :math:`a_v(u,w) = (k_u - |
| (1+q_v(u,w)+\theta_{uv})) + (k_w - (1+q_v(u,w)+\theta_{uw}))`, where |
| :math:`\theta_{uw} = 1` if :math:`u` and :math:`w` are connected and 0 |
| otherwise. [2]_ |
| |
| Parameters |
| ---------- |
| G : graph |
| |
| nodes : container of nodes, optional (default=all nodes in G) |
| Compute clustering for nodes in this container. |
| |
| Returns |
| ------- |
| c4 : dictionary |
| A dictionary keyed by node with the square clustering coefficient value. |
| |
| Examples |
| -------- |
| >>> G = nx.complete_graph(5) |
| >>> print(nx.square_clustering(G, 0)) |
| 1.0 |
| >>> print(nx.square_clustering(G)) |
| {0: 1.0, 1: 1.0, 2: 1.0, 3: 1.0, 4: 1.0} |
| |
| Notes |
| ----- |
| Self loops are ignored. |
| |
| While :math:`C_3(v)` (triangle clustering) gives the probability that |
| two neighbors of node v are connected with each other, :math:`C_4(v)` is |
| the probability that two neighbors of node v share a common |
| neighbor different from v. This algorithm can be applied to both |
| bipartite and unipartite networks. |
| |
| References |
| ---------- |
| .. [1] Pedro G. Lind, Marta C. González, and Hans J. Herrmann. 2005 |
| Cycles and clustering in bipartite networks. |
| Physical Review E (72) 056127. |
| .. [2] Zhang, Peng et al. Clustering Coefficient and Community Structure of |
| Bipartite Networks. Physica A: Statistical Mechanics and its Applications 387.27 (2008): 6869–6875. |
| https://arxiv.org/abs/0710.0117v1 |
| """ |
| if nodes is None: |
| node_iter = G |
| else: |
| node_iter = G.nbunch_iter(nodes) |
| clustering = {} |
| _G_adj = G._adj |
|
|
| class GAdj(dict): |
| """Calculate (and cache) node neighbor sets excluding self-loops.""" |
|
|
| def __missing__(self, v): |
| v_neighbors = self[v] = set(_G_adj[v]) |
| v_neighbors.discard(v) |
| return v_neighbors |
|
|
| G_adj = GAdj() |
|
|
| for v in node_iter: |
| v_neighbors = G_adj[v] |
| v_degrees_m1 = len(v_neighbors) - 1 |
| if v_degrees_m1 <= 0: |
| |
| clustering[v] = 0 |
| continue |
|
|
| |
| |
| |
| uw_degrees = 0 |
| |
| uw_count = len(v_neighbors) * v_degrees_m1 |
| |
| triangles = 0 |
| |
| squares = 0 |
|
|
| |
| for u in v_neighbors: |
| u_neighbors = G_adj[u] |
| uw_degrees += len(u_neighbors) * v_degrees_m1 |
| |
| p2 = len(u_neighbors & v_neighbors) |
| |
| |
| triangles += p2 |
| |
| |
| squares += p2 * (p2 - 1) |
|
|
| |
| |
| two_hop_neighbors = set.union(*(G_adj[u] for u in v_neighbors)) |
| two_hop_neighbors -= v_neighbors |
| two_hop_neighbors.discard(v) |
| for x in two_hop_neighbors: |
| p2 = len(v_neighbors & G_adj[x]) |
| squares += p2 * (p2 - 1) |
|
|
| squares //= 2 |
| potential = uw_degrees - uw_count - triangles - squares |
| if potential > 0: |
| clustering[v] = squares / potential |
| else: |
| clustering[v] = 0 |
| if nodes in G: |
| |
| return clustering[nodes] |
| return clustering |
|
|
|
|
| @not_implemented_for("directed") |
| @nx._dispatchable |
| def generalized_degree(G, nodes=None): |
| r"""Compute the generalized degree for nodes. |
| |
| For each node, the generalized degree shows how many edges of given |
| triangle multiplicity the node is connected to. The triangle multiplicity |
| of an edge is the number of triangles an edge participates in. The |
| generalized degree of node :math:`i` can be written as a vector |
| :math:`\mathbf{k}_i=(k_i^{(0)}, \dotsc, k_i^{(N-2)})` where |
| :math:`k_i^{(j)}` is the number of edges attached to node :math:`i` that |
| participate in :math:`j` triangles. |
| |
| Parameters |
| ---------- |
| G : graph |
| |
| nodes : container of nodes, optional (default=all nodes in G) |
| Compute the generalized degree for nodes in this container. |
| |
| Returns |
| ------- |
| out : Counter, or dictionary of Counters |
| Generalized degree of specified nodes. The Counter is keyed by edge |
| triangle multiplicity. |
| |
| Examples |
| -------- |
| >>> G = nx.complete_graph(5) |
| >>> print(nx.generalized_degree(G, 0)) |
| Counter({3: 4}) |
| >>> print(nx.generalized_degree(G)) |
| {0: Counter({3: 4}), 1: Counter({3: 4}), 2: Counter({3: 4}), 3: Counter({3: 4}), 4: Counter({3: 4})} |
| |
| To recover the number of triangles attached to a node: |
| |
| >>> k1 = nx.generalized_degree(G, 0) |
| >>> sum([k * v for k, v in k1.items()]) / 2 == nx.triangles(G, 0) |
| True |
| |
| Notes |
| ----- |
| Self loops are ignored. |
| |
| In a network of N nodes, the highest triangle multiplicity an edge can have |
| is N-2. |
| |
| The return value does not include a `zero` entry if no edges of a |
| particular triangle multiplicity are present. |
| |
| The number of triangles node :math:`i` is attached to can be recovered from |
| the generalized degree :math:`\mathbf{k}_i=(k_i^{(0)}, \dotsc, |
| k_i^{(N-2)})` by :math:`(k_i^{(1)}+2k_i^{(2)}+\dotsc +(N-2)k_i^{(N-2)})/2`. |
| |
| References |
| ---------- |
| .. [1] Networks with arbitrary edge multiplicities by V. Zlatić, |
| D. Garlaschelli and G. Caldarelli, EPL (Europhysics Letters), |
| Volume 97, Number 2 (2012). |
| https://iopscience.iop.org/article/10.1209/0295-5075/97/28005 |
| """ |
| if nodes in G: |
| return next(_triangles_and_degree_iter(G, nodes))[3] |
| return {v: gd for v, d, t, gd in _triangles_and_degree_iter(G, nodes)} |
|
|