| """Test sequences for graphiness.""" |
|
|
| import heapq |
|
|
| import networkx as nx |
|
|
| __all__ = [ |
| "is_graphical", |
| "is_multigraphical", |
| "is_pseudographical", |
| "is_digraphical", |
| "is_valid_degree_sequence_erdos_gallai", |
| "is_valid_degree_sequence_havel_hakimi", |
| ] |
|
|
|
|
| @nx._dispatchable(graphs=None) |
| def is_graphical(sequence, method="eg"): |
| """Returns True if sequence is a valid degree sequence. |
| |
| A degree sequence is valid if some graph can realize it. |
| |
| Parameters |
| ---------- |
| sequence : list or iterable container |
| A sequence of integer node degrees |
| |
| method : "eg" | "hh" (default: 'eg') |
| The method used to validate the degree sequence. |
| "eg" corresponds to the Erdős-Gallai algorithm |
| [EG1960]_, [choudum1986]_, and |
| "hh" to the Havel-Hakimi algorithm |
| [havel1955]_, [hakimi1962]_, [CL1996]_. |
| |
| Returns |
| ------- |
| valid : bool |
| True if the sequence is a valid degree sequence and False if not. |
| |
| Examples |
| -------- |
| >>> G = nx.path_graph(4) |
| >>> sequence = (d for n, d in G.degree()) |
| >>> nx.is_graphical(sequence) |
| True |
| |
| To test a non-graphical sequence: |
| >>> sequence_list = [d for n, d in G.degree()] |
| >>> sequence_list[-1] += 1 |
| >>> nx.is_graphical(sequence_list) |
| False |
| |
| References |
| ---------- |
| .. [EG1960] Erdős and Gallai, Mat. Lapok 11 264, 1960. |
| .. [choudum1986] S.A. Choudum. "A simple proof of the Erdős-Gallai theorem on |
| graph sequences." Bulletin of the Australian Mathematical Society, 33, |
| pp 67-70, 1986. https://doi.org/10.1017/S0004972700002872 |
| .. [havel1955] Havel, V. "A Remark on the Existence of Finite Graphs" |
| Casopis Pest. Mat. 80, 477-480, 1955. |
| .. [hakimi1962] Hakimi, S. "On the Realizability of a Set of Integers as |
| Degrees of the Vertices of a Graph." SIAM J. Appl. Math. 10, 496-506, 1962. |
| .. [CL1996] G. Chartrand and L. Lesniak, "Graphs and Digraphs", |
| Chapman and Hall/CRC, 1996. |
| """ |
| if method == "eg": |
| valid = is_valid_degree_sequence_erdos_gallai(list(sequence)) |
| elif method == "hh": |
| valid = is_valid_degree_sequence_havel_hakimi(list(sequence)) |
| else: |
| msg = "`method` must be 'eg' or 'hh'" |
| raise nx.NetworkXException(msg) |
| return valid |
|
|
|
|
| def _basic_graphical_tests(deg_sequence): |
| |
| deg_sequence = nx.utils.make_list_of_ints(deg_sequence) |
| p = len(deg_sequence) |
| num_degs = [0] * p |
| dmax, dmin, dsum, n = 0, p, 0, 0 |
| for d in deg_sequence: |
| |
| if d < 0 or d >= p: |
| raise nx.NetworkXUnfeasible |
| |
| elif d > 0: |
| dmax, dmin, dsum, n = max(dmax, d), min(dmin, d), dsum + d, n + 1 |
| num_degs[d] += 1 |
| |
| if dsum % 2 or dsum > n * (n - 1): |
| raise nx.NetworkXUnfeasible |
| return dmax, dmin, dsum, n, num_degs |
|
|
|
|
| @nx._dispatchable(graphs=None) |
| def is_valid_degree_sequence_havel_hakimi(deg_sequence): |
| r"""Returns True if deg_sequence can be realized by a simple graph. |
| |
| The validation proceeds using the Havel-Hakimi theorem |
| [havel1955]_, [hakimi1962]_, [CL1996]_. |
| Worst-case run time is $O(s)$ where $s$ is the sum of the sequence. |
| |
| Parameters |
| ---------- |
| deg_sequence : list |
| A list of integers where each element specifies the degree of a node |
| in a graph. |
| |
| Returns |
| ------- |
| valid : bool |
| True if deg_sequence is graphical and False if not. |
| |
| Examples |
| -------- |
| >>> G = nx.Graph([(1, 2), (1, 3), (2, 3), (3, 4), (4, 2), (5, 1), (5, 4)]) |
| >>> sequence = (d for _, d in G.degree()) |
| >>> nx.is_valid_degree_sequence_havel_hakimi(sequence) |
| True |
| |
| To test a non-valid sequence: |
| >>> sequence_list = [d for _, d in G.degree()] |
| >>> sequence_list[-1] += 1 |
| >>> nx.is_valid_degree_sequence_havel_hakimi(sequence_list) |
| False |
| |
| Notes |
| ----- |
| The ZZ condition says that for the sequence d if |
| |
| .. math:: |
| |d| >= \frac{(\max(d) + \min(d) + 1)^2}{4*\min(d)} |
| |
| then d is graphical. This was shown in Theorem 6 in [1]_. |
| |
| References |
| ---------- |
| .. [1] I.E. Zverovich and V.E. Zverovich. "Contributions to the theory |
| of graphic sequences", Discrete Mathematics, 105, pp. 292-303 (1992). |
| .. [havel1955] Havel, V. "A Remark on the Existence of Finite Graphs" |
| Casopis Pest. Mat. 80, 477-480, 1955. |
| .. [hakimi1962] Hakimi, S. "On the Realizability of a Set of Integers as |
| Degrees of the Vertices of a Graph." SIAM J. Appl. Math. 10, 496-506, 1962. |
| .. [CL1996] G. Chartrand and L. Lesniak, "Graphs and Digraphs", |
| Chapman and Hall/CRC, 1996. |
| """ |
| try: |
| dmax, dmin, dsum, n, num_degs = _basic_graphical_tests(deg_sequence) |
| except nx.NetworkXUnfeasible: |
| return False |
| |
| if n == 0 or 4 * dmin * n >= (dmax + dmin + 1) * (dmax + dmin + 1): |
| return True |
|
|
| modstubs = [0] * (dmax + 1) |
| |
| while n > 0: |
| |
| while num_degs[dmax] == 0: |
| dmax -= 1 |
| |
| |
| if dmax > n - 1: |
| return False |
|
|
| |
| num_degs[dmax], n = num_degs[dmax] - 1, n - 1 |
| |
| mslen = 0 |
| k = dmax |
| for i in range(dmax): |
| while num_degs[k] == 0: |
| k -= 1 |
| num_degs[k], n = num_degs[k] - 1, n - 1 |
| if k > 1: |
| modstubs[mslen] = k - 1 |
| mslen += 1 |
| |
| for i in range(mslen): |
| stub = modstubs[i] |
| num_degs[stub], n = num_degs[stub] + 1, n + 1 |
| return True |
|
|
|
|
| @nx._dispatchable(graphs=None) |
| def is_valid_degree_sequence_erdos_gallai(deg_sequence): |
| r"""Returns True if deg_sequence can be realized by a simple graph. |
| |
| The validation is done using the Erdős-Gallai theorem [EG1960]_. |
| |
| Parameters |
| ---------- |
| deg_sequence : list |
| A list of integers |
| |
| Returns |
| ------- |
| valid : bool |
| True if deg_sequence is graphical and False if not. |
| |
| Examples |
| -------- |
| >>> G = nx.Graph([(1, 2), (1, 3), (2, 3), (3, 4), (4, 2), (5, 1), (5, 4)]) |
| >>> sequence = (d for _, d in G.degree()) |
| >>> nx.is_valid_degree_sequence_erdos_gallai(sequence) |
| True |
| |
| To test a non-valid sequence: |
| >>> sequence_list = [d for _, d in G.degree()] |
| >>> sequence_list[-1] += 1 |
| >>> nx.is_valid_degree_sequence_erdos_gallai(sequence_list) |
| False |
| |
| Notes |
| ----- |
| |
| This implementation uses an equivalent form of the Erdős-Gallai criterion. |
| Worst-case run time is $O(n)$ where $n$ is the length of the sequence. |
| |
| Specifically, a sequence d is graphical if and only if the |
| sum of the sequence is even and for all strong indices k in the sequence, |
| |
| .. math:: |
| |
| \sum_{i=1}^{k} d_i \leq k(k-1) + \sum_{j=k+1}^{n} \min(d_i,k) |
| = k(n-1) - ( k \sum_{j=0}^{k-1} n_j - \sum_{j=0}^{k-1} j n_j ) |
| |
| A strong index k is any index where d_k >= k and the value n_j is the |
| number of occurrences of j in d. The maximal strong index is called the |
| Durfee index. |
| |
| This particular rearrangement comes from the proof of Theorem 3 in [2]_. |
| |
| The ZZ condition says that for the sequence d if |
| |
| .. math:: |
| |d| >= \frac{(\max(d) + \min(d) + 1)^2}{4*\min(d)} |
| |
| then d is graphical. This was shown in Theorem 6 in [2]_. |
| |
| References |
| ---------- |
| .. [1] A. Tripathi and S. Vijay. "A note on a theorem of Erdős & Gallai", |
| Discrete Mathematics, 265, pp. 417-420 (2003). |
| .. [2] I.E. Zverovich and V.E. Zverovich. "Contributions to the theory |
| of graphic sequences", Discrete Mathematics, 105, pp. 292-303 (1992). |
| .. [EG1960] Erdős and Gallai, Mat. Lapok 11 264, 1960. |
| """ |
| try: |
| dmax, dmin, dsum, n, num_degs = _basic_graphical_tests(deg_sequence) |
| except nx.NetworkXUnfeasible: |
| return False |
| |
| if n == 0 or 4 * dmin * n >= (dmax + dmin + 1) * (dmax + dmin + 1): |
| return True |
|
|
| |
| k, sum_deg, sum_nj, sum_jnj = 0, 0, 0, 0 |
| for dk in range(dmax, dmin - 1, -1): |
| if dk < k + 1: |
| return True |
| if num_degs[dk] > 0: |
| run_size = num_degs[dk] |
| if dk < k + run_size: |
| run_size = dk - k |
| sum_deg += run_size * dk |
| for v in range(run_size): |
| sum_nj += num_degs[k + v] |
| sum_jnj += (k + v) * num_degs[k + v] |
| k += run_size |
| if sum_deg > k * (n - 1) - k * sum_nj + sum_jnj: |
| return False |
| return True |
|
|
|
|
| @nx._dispatchable(graphs=None) |
| def is_multigraphical(sequence): |
| """Returns True if some multigraph can realize the sequence. |
| |
| Parameters |
| ---------- |
| sequence : list |
| A list of integers |
| |
| Returns |
| ------- |
| valid : bool |
| True if deg_sequence is a multigraphic degree sequence and False if not. |
| |
| Examples |
| -------- |
| >>> G = nx.MultiGraph([(1, 2), (1, 3), (2, 3), (3, 4), (4, 2), (5, 1), (5, 4)]) |
| >>> sequence = (d for _, d in G.degree()) |
| >>> nx.is_multigraphical(sequence) |
| True |
| |
| To test a non-multigraphical sequence: |
| >>> sequence_list = [d for _, d in G.degree()] |
| >>> sequence_list[-1] += 1 |
| >>> nx.is_multigraphical(sequence_list) |
| False |
| |
| Notes |
| ----- |
| The worst-case run time is $O(n)$ where $n$ is the length of the sequence. |
| |
| References |
| ---------- |
| .. [1] S. L. Hakimi. "On the realizability of a set of integers as |
| degrees of the vertices of a linear graph", J. SIAM, 10, pp. 496-506 |
| (1962). |
| """ |
| try: |
| deg_sequence = nx.utils.make_list_of_ints(sequence) |
| except nx.NetworkXError: |
| return False |
| dsum, dmax = 0, 0 |
| for d in deg_sequence: |
| if d < 0: |
| return False |
| dsum, dmax = dsum + d, max(dmax, d) |
| if dsum % 2 or dsum < 2 * dmax: |
| return False |
| return True |
|
|
|
|
| @nx._dispatchable(graphs=None) |
| def is_pseudographical(sequence): |
| """Returns True if some pseudograph can realize the sequence. |
| |
| Every nonnegative integer sequence with an even sum is pseudographical |
| (see [1]_). |
| |
| Parameters |
| ---------- |
| sequence : list or iterable container |
| A sequence of integer node degrees |
| |
| Returns |
| ------- |
| valid : bool |
| True if the sequence is a pseudographic degree sequence and False if not. |
| |
| Examples |
| -------- |
| >>> G = nx.Graph([(1, 2), (1, 3), (2, 3), (3, 4), (4, 2), (5, 1), (5, 4)]) |
| >>> sequence = (d for _, d in G.degree()) |
| >>> nx.is_pseudographical(sequence) |
| True |
| |
| To test a non-pseudographical sequence: |
| >>> sequence_list = [d for _, d in G.degree()] |
| >>> sequence_list[-1] += 1 |
| >>> nx.is_pseudographical(sequence_list) |
| False |
| |
| Notes |
| ----- |
| The worst-case run time is $O(n)$ where n is the length of the sequence. |
| |
| References |
| ---------- |
| .. [1] F. Boesch and F. Harary. "Line removal algorithms for graphs |
| and their degree lists", IEEE Trans. Circuits and Systems, CAS-23(12), |
| pp. 778-782 (1976). |
| """ |
| try: |
| deg_sequence = nx.utils.make_list_of_ints(sequence) |
| except nx.NetworkXError: |
| return False |
| return sum(deg_sequence) % 2 == 0 and min(deg_sequence) >= 0 |
|
|
|
|
| @nx._dispatchable(graphs=None) |
| def is_digraphical(in_sequence, out_sequence): |
| r"""Returns True if some directed graph can realize the in- and out-degree |
| sequences. |
| |
| Parameters |
| ---------- |
| in_sequence : list or iterable container |
| A sequence of integer node in-degrees |
| |
| out_sequence : list or iterable container |
| A sequence of integer node out-degrees |
| |
| Returns |
| ------- |
| valid : bool |
| True if in and out-sequences are digraphic False if not. |
| |
| Examples |
| -------- |
| >>> G = nx.DiGraph([(1, 2), (1, 3), (2, 3), (3, 4), (4, 2), (5, 1), (5, 4)]) |
| >>> in_seq = (d for n, d in G.in_degree()) |
| >>> out_seq = (d for n, d in G.out_degree()) |
| >>> nx.is_digraphical(in_seq, out_seq) |
| True |
| |
| To test a non-digraphical scenario: |
| >>> in_seq_list = [d for n, d in G.in_degree()] |
| >>> in_seq_list[-1] += 1 |
| >>> nx.is_digraphical(in_seq_list, out_seq) |
| False |
| |
| Notes |
| ----- |
| This algorithm is from Kleitman and Wang [1]_. |
| The worst case runtime is $O(s \times \log n)$ where $s$ and $n$ are the |
| sum and length of the sequences respectively. |
| |
| References |
| ---------- |
| .. [1] D.J. Kleitman and D.L. Wang |
| Algorithms for Constructing Graphs and Digraphs with Given Valences |
| and Factors, Discrete Mathematics, 6(1), pp. 79-88 (1973) |
| """ |
| try: |
| in_deg_sequence = nx.utils.make_list_of_ints(in_sequence) |
| out_deg_sequence = nx.utils.make_list_of_ints(out_sequence) |
| except nx.NetworkXError: |
| return False |
| |
| |
| sumin, sumout, nin, nout = 0, 0, len(in_deg_sequence), len(out_deg_sequence) |
| maxn = max(nin, nout) |
| maxin = 0 |
| if maxn == 0: |
| return True |
| stubheap, zeroheap = [], [] |
| for n in range(maxn): |
| in_deg, out_deg = 0, 0 |
| if n < nout: |
| out_deg = out_deg_sequence[n] |
| if n < nin: |
| in_deg = in_deg_sequence[n] |
| if in_deg < 0 or out_deg < 0: |
| return False |
| sumin, sumout, maxin = sumin + in_deg, sumout + out_deg, max(maxin, in_deg) |
| if in_deg > 0: |
| stubheap.append((-1 * out_deg, -1 * in_deg)) |
| elif out_deg > 0: |
| zeroheap.append(-1 * out_deg) |
| if sumin != sumout: |
| return False |
| heapq.heapify(stubheap) |
| heapq.heapify(zeroheap) |
|
|
| modstubs = [(0, 0)] * (maxin + 1) |
| |
| while stubheap: |
| |
| (freeout, freein) = heapq.heappop(stubheap) |
| freein *= -1 |
| if freein > len(stubheap) + len(zeroheap): |
| return False |
|
|
| |
| mslen = 0 |
| for i in range(freein): |
| if zeroheap and (not stubheap or stubheap[0][0] > zeroheap[0]): |
| stubout = heapq.heappop(zeroheap) |
| stubin = 0 |
| else: |
| (stubout, stubin) = heapq.heappop(stubheap) |
| if stubout == 0: |
| return False |
| |
| if stubout + 1 < 0 or stubin < 0: |
| modstubs[mslen] = (stubout + 1, stubin) |
| mslen += 1 |
|
|
| |
| for i in range(mslen): |
| stub = modstubs[i] |
| if stub[1] < 0: |
| heapq.heappush(stubheap, stub) |
| else: |
| heapq.heappush(zeroheap, stub[0]) |
| if freeout < 0: |
| heapq.heappush(zeroheap, freeout) |
| return True |
|
|