| """Base class for directed graphs.""" |
|
|
| from copy import deepcopy |
| from functools import cached_property |
|
|
| import networkx as nx |
| from networkx import convert |
| from networkx.classes.coreviews import AdjacencyView |
| from networkx.classes.graph import Graph |
| from networkx.classes.reportviews import ( |
| DiDegreeView, |
| InDegreeView, |
| InEdgeView, |
| OutDegreeView, |
| OutEdgeView, |
| ) |
| from networkx.exception import NetworkXError |
|
|
| __all__ = ["DiGraph"] |
|
|
|
|
| class _CachedPropertyResetterAdjAndSucc: |
| """Data Descriptor class that syncs and resets cached properties adj and succ |
| |
| The cached properties `adj` and `succ` are reset whenever `_adj` or `_succ` |
| are set to new objects. In addition, the attributes `_succ` and `_adj` |
| are synced so these two names point to the same object. |
| |
| Warning: most of the time, when ``G._adj`` is set, ``G._pred`` should also |
| be set to maintain a valid data structure. They share datadicts. |
| |
| This object sits on a class and ensures that any instance of that |
| class clears its cached properties "succ" and "adj" whenever the |
| underlying instance attributes "_succ" or "_adj" are set to a new object. |
| It only affects the set process of the obj._adj and obj._succ attribute. |
| All get/del operations act as they normally would. |
| |
| For info on Data Descriptors see: https://docs.python.org/3/howto/descriptor.html |
| """ |
|
|
| def __set__(self, obj, value): |
| od = obj.__dict__ |
| od["_adj"] = value |
| od["_succ"] = value |
| |
| props = [ |
| "adj", |
| "succ", |
| "edges", |
| "out_edges", |
| "degree", |
| "out_degree", |
| "in_degree", |
| ] |
| for prop in props: |
| if prop in od: |
| del od[prop] |
|
|
|
|
| class _CachedPropertyResetterPred: |
| """Data Descriptor class for _pred that resets ``pred`` cached_property when needed |
| |
| This assumes that the ``cached_property`` ``G.pred`` should be reset whenever |
| ``G._pred`` is set to a new value. |
| |
| Warning: most of the time, when ``G._pred`` is set, ``G._adj`` should also |
| be set to maintain a valid data structure. They share datadicts. |
| |
| This object sits on a class and ensures that any instance of that |
| class clears its cached property "pred" whenever the underlying |
| instance attribute "_pred" is set to a new object. It only affects |
| the set process of the obj._pred attribute. All get/del operations |
| act as they normally would. |
| |
| For info on Data Descriptors see: https://docs.python.org/3/howto/descriptor.html |
| """ |
|
|
| def __set__(self, obj, value): |
| od = obj.__dict__ |
| od["_pred"] = value |
| |
| props = ["pred", "in_edges", "degree", "out_degree", "in_degree"] |
| for prop in props: |
| if prop in od: |
| del od[prop] |
|
|
|
|
| class DiGraph(Graph): |
| """ |
| Base class for directed graphs. |
| |
| A DiGraph stores nodes and edges with optional data, or attributes. |
| |
| DiGraphs hold directed edges. Self loops are allowed but multiple |
| (parallel) edges are not. |
| |
| Nodes can be arbitrary (hashable) Python objects with optional |
| key/value attributes. By convention `None` is not used as a node. |
| |
| Edges are represented as links between nodes with optional |
| key/value attributes. |
| |
| Parameters |
| ---------- |
| incoming_graph_data : input graph (optional, default: None) |
| Data to initialize graph. If None (default) an empty |
| graph is created. The data can be any format that is supported |
| by the to_networkx_graph() function, currently including edge list, |
| dict of dicts, dict of lists, NetworkX graph, 2D NumPy array, SciPy |
| sparse matrix, or PyGraphviz graph. |
| |
| attr : keyword arguments, optional (default= no attributes) |
| Attributes to add to graph as key=value pairs. |
| |
| See Also |
| -------- |
| Graph |
| MultiGraph |
| MultiDiGraph |
| |
| Examples |
| -------- |
| Create an empty graph structure (a "null graph") with no nodes and |
| no edges. |
| |
| >>> G = nx.DiGraph() |
| |
| G can be grown in several ways. |
| |
| **Nodes:** |
| |
| Add one node at a time: |
| |
| >>> G.add_node(1) |
| |
| Add the nodes from any container (a list, dict, set or |
| even the lines from a file or the nodes from another graph). |
| |
| >>> G.add_nodes_from([2, 3]) |
| >>> G.add_nodes_from(range(100, 110)) |
| >>> H = nx.path_graph(10) |
| >>> G.add_nodes_from(H) |
| |
| In addition to strings and integers any hashable Python object |
| (except None) can represent a node, e.g. a customized node object, |
| or even another Graph. |
| |
| >>> G.add_node(H) |
| |
| **Edges:** |
| |
| G can also be grown by adding edges. |
| |
| Add one edge, |
| |
| >>> G.add_edge(1, 2) |
| |
| a list of edges, |
| |
| >>> G.add_edges_from([(1, 2), (1, 3)]) |
| |
| or a collection of edges, |
| |
| >>> G.add_edges_from(H.edges) |
| |
| If some edges connect nodes not yet in the graph, the nodes |
| are added automatically. There are no errors when adding |
| nodes or edges that already exist. |
| |
| **Attributes:** |
| |
| Each graph, node, and edge can hold key/value attribute pairs |
| in an associated attribute dictionary (the keys must be hashable). |
| By default these are empty, but can be added or changed using |
| add_edge, add_node or direct manipulation of the attribute |
| dictionaries named graph, node and edge respectively. |
| |
| >>> G = nx.DiGraph(day="Friday") |
| >>> G.graph |
| {'day': 'Friday'} |
| |
| Add node attributes using add_node(), add_nodes_from() or G.nodes |
| |
| >>> G.add_node(1, time="5pm") |
| >>> G.add_nodes_from([3], time="2pm") |
| >>> G.nodes[1] |
| {'time': '5pm'} |
| >>> G.nodes[1]["room"] = 714 |
| >>> del G.nodes[1]["room"] # remove attribute |
| >>> list(G.nodes(data=True)) |
| [(1, {'time': '5pm'}), (3, {'time': '2pm'})] |
| |
| Add edge attributes using add_edge(), add_edges_from(), subscript |
| notation, or G.edges. |
| |
| >>> G.add_edge(1, 2, weight=4.7) |
| >>> G.add_edges_from([(3, 4), (4, 5)], color="red") |
| >>> G.add_edges_from([(1, 2, {"color": "blue"}), (2, 3, {"weight": 8})]) |
| >>> G[1][2]["weight"] = 4.7 |
| >>> G.edges[1, 2]["weight"] = 4 |
| |
| Warning: we protect the graph data structure by making `G.edges[1, 2]` a |
| read-only dict-like structure. However, you can assign to attributes |
| in e.g. `G.edges[1, 2]`. Thus, use 2 sets of brackets to add/change |
| data attributes: `G.edges[1, 2]['weight'] = 4` |
| (For multigraphs: `MG.edges[u, v, key][name] = value`). |
| |
| **Shortcuts:** |
| |
| Many common graph features allow python syntax to speed reporting. |
| |
| >>> 1 in G # check if node in graph |
| True |
| >>> [n for n in G if n < 3] # iterate through nodes |
| [1, 2] |
| >>> len(G) # number of nodes in graph |
| 5 |
| |
| Often the best way to traverse all edges of a graph is via the neighbors. |
| The neighbors are reported as an adjacency-dict `G.adj` or `G.adjacency()` |
| |
| >>> for n, nbrsdict in G.adjacency(): |
| ... for nbr, eattr in nbrsdict.items(): |
| ... if "weight" in eattr: |
| ... # Do something useful with the edges |
| ... pass |
| |
| But the edges reporting object is often more convenient: |
| |
| >>> for u, v, weight in G.edges(data="weight"): |
| ... if weight is not None: |
| ... # Do something useful with the edges |
| ... pass |
| |
| **Reporting:** |
| |
| Simple graph information is obtained using object-attributes and methods. |
| Reporting usually provides views instead of containers to reduce memory |
| usage. The views update as the graph is updated similarly to dict-views. |
| The objects `nodes`, `edges` and `adj` provide access to data attributes |
| via lookup (e.g. `nodes[n]`, `edges[u, v]`, `adj[u][v]`) and iteration |
| (e.g. `nodes.items()`, `nodes.data('color')`, |
| `nodes.data('color', default='blue')` and similarly for `edges`) |
| Views exist for `nodes`, `edges`, `neighbors()`/`adj` and `degree`. |
| |
| For details on these and other miscellaneous methods, see below. |
| |
| **Subclasses (Advanced):** |
| |
| The Graph class uses a dict-of-dict-of-dict data structure. |
| The outer dict (node_dict) holds adjacency information keyed by node. |
| The next dict (adjlist_dict) represents the adjacency information and holds |
| edge data keyed by neighbor. The inner dict (edge_attr_dict) represents |
| the edge data and holds edge attribute values keyed by attribute names. |
| |
| Each of these three dicts can be replaced in a subclass by a user defined |
| dict-like object. In general, the dict-like features should be |
| maintained but extra features can be added. To replace one of the |
| dicts create a new graph class by changing the class(!) variable |
| holding the factory for that dict-like structure. The variable names are |
| node_dict_factory, node_attr_dict_factory, adjlist_inner_dict_factory, |
| adjlist_outer_dict_factory, edge_attr_dict_factory and graph_attr_dict_factory. |
| |
| node_dict_factory : function, (default: dict) |
| Factory function to be used to create the dict containing node |
| attributes, keyed by node id. |
| It should require no arguments and return a dict-like object |
| |
| node_attr_dict_factory: function, (default: dict) |
| Factory function to be used to create the node attribute |
| dict which holds attribute values keyed by attribute name. |
| It should require no arguments and return a dict-like object |
| |
| adjlist_outer_dict_factory : function, (default: dict) |
| Factory function to be used to create the outer-most dict |
| in the data structure that holds adjacency info keyed by node. |
| It should require no arguments and return a dict-like object. |
| |
| adjlist_inner_dict_factory : function, optional (default: dict) |
| Factory function to be used to create the adjacency list |
| dict which holds edge data keyed by neighbor. |
| It should require no arguments and return a dict-like object |
| |
| edge_attr_dict_factory : function, optional (default: dict) |
| Factory function to be used to create the edge attribute |
| dict which holds attribute values keyed by attribute name. |
| It should require no arguments and return a dict-like object. |
| |
| graph_attr_dict_factory : function, (default: dict) |
| Factory function to be used to create the graph attribute |
| dict which holds attribute values keyed by attribute name. |
| It should require no arguments and return a dict-like object. |
| |
| Typically, if your extension doesn't impact the data structure all |
| methods will inherited without issue except: `to_directed/to_undirected`. |
| By default these methods create a DiGraph/Graph class and you probably |
| want them to create your extension of a DiGraph/Graph. To facilitate |
| this we define two class variables that you can set in your subclass. |
| |
| to_directed_class : callable, (default: DiGraph or MultiDiGraph) |
| Class to create a new graph structure in the `to_directed` method. |
| If `None`, a NetworkX class (DiGraph or MultiDiGraph) is used. |
| |
| to_undirected_class : callable, (default: Graph or MultiGraph) |
| Class to create a new graph structure in the `to_undirected` method. |
| If `None`, a NetworkX class (Graph or MultiGraph) is used. |
| |
| **Subclassing Example** |
| |
| Create a low memory graph class that effectively disallows edge |
| attributes by using a single attribute dict for all edges. |
| This reduces the memory used, but you lose edge attributes. |
| |
| >>> class ThinGraph(nx.Graph): |
| ... all_edge_dict = {"weight": 1} |
| ... |
| ... def single_edge_dict(self): |
| ... return self.all_edge_dict |
| ... |
| ... edge_attr_dict_factory = single_edge_dict |
| >>> G = ThinGraph() |
| >>> G.add_edge(2, 1) |
| >>> G[2][1] |
| {'weight': 1} |
| >>> G.add_edge(2, 2) |
| >>> G[2][1] is G[2][2] |
| True |
| """ |
|
|
| _adj = _CachedPropertyResetterAdjAndSucc() |
| _succ = _adj |
| _pred = _CachedPropertyResetterPred() |
|
|
| |
| |
| |
| |
| |
| |
| @nx._dispatchable(name="digraph__new__", graphs=None, returns_graph=True) |
| def __new__(cls, *args, **kwargs): |
| return object.__new__(cls) |
|
|
| def __init__(self, incoming_graph_data=None, **attr): |
| """Initialize a graph with edges, name, or graph attributes. |
| |
| Parameters |
| ---------- |
| incoming_graph_data : input graph (optional, default: None) |
| Data to initialize graph. If None (default) an empty |
| graph is created. The data can be an edge list, or any |
| NetworkX graph object. If the corresponding optional Python |
| packages are installed the data can also be a 2D NumPy array, a |
| SciPy sparse array, or a PyGraphviz graph. |
| |
| attr : keyword arguments, optional (default= no attributes) |
| Attributes to add to graph as key=value pairs. |
| |
| See Also |
| -------- |
| convert |
| |
| Examples |
| -------- |
| >>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> G = nx.Graph(name="my graph") |
| >>> e = [(1, 2), (2, 3), (3, 4)] # list of edges |
| >>> G = nx.Graph(e) |
| |
| Arbitrary graph attribute pairs (key=value) may be assigned |
| |
| >>> G = nx.Graph(e, day="Friday") |
| >>> G.graph |
| {'day': 'Friday'} |
| |
| """ |
| self.graph = self.graph_attr_dict_factory() |
| self._node = self.node_dict_factory() |
| |
| |
| |
| self._adj = self.adjlist_outer_dict_factory() |
| self._pred = self.adjlist_outer_dict_factory() |
| |
|
|
| self.__networkx_cache__ = {} |
| |
| if incoming_graph_data is not None: |
| convert.to_networkx_graph(incoming_graph_data, create_using=self) |
| |
| attr.pop("backend", None) |
| self.graph.update(attr) |
|
|
| @cached_property |
| def adj(self): |
| """Graph adjacency object holding the neighbors of each node. |
| |
| This object is a read-only dict-like structure with node keys |
| and neighbor-dict values. The neighbor-dict is keyed by neighbor |
| to the edge-data-dict. So `G.adj[3][2]['color'] = 'blue'` sets |
| the color of the edge `(3, 2)` to `"blue"`. |
| |
| Iterating over G.adj behaves like a dict. Useful idioms include |
| `for nbr, datadict in G.adj[n].items():`. |
| |
| The neighbor information is also provided by subscripting the graph. |
| So `for nbr, foovalue in G[node].data('foo', default=1):` works. |
| |
| For directed graphs, `G.adj` holds outgoing (successor) info. |
| """ |
| return AdjacencyView(self._succ) |
|
|
| @cached_property |
| def succ(self): |
| """Graph adjacency object holding the successors of each node. |
| |
| This object is a read-only dict-like structure with node keys |
| and neighbor-dict values. The neighbor-dict is keyed by neighbor |
| to the edge-data-dict. So `G.succ[3][2]['color'] = 'blue'` sets |
| the color of the edge `(3, 2)` to `"blue"`. |
| |
| Iterating over G.succ behaves like a dict. Useful idioms include |
| `for nbr, datadict in G.succ[n].items():`. A data-view not provided |
| by dicts also exists: `for nbr, foovalue in G.succ[node].data('foo'):` |
| and a default can be set via a `default` argument to the `data` method. |
| |
| The neighbor information is also provided by subscripting the graph. |
| So `for nbr, foovalue in G[node].data('foo', default=1):` works. |
| |
| For directed graphs, `G.adj` is identical to `G.succ`. |
| """ |
| return AdjacencyView(self._succ) |
|
|
| @cached_property |
| def pred(self): |
| """Graph adjacency object holding the predecessors of each node. |
| |
| This object is a read-only dict-like structure with node keys |
| and neighbor-dict values. The neighbor-dict is keyed by neighbor |
| to the edge-data-dict. So `G.pred[2][3]['color'] = 'blue'` sets |
| the color of the edge `(3, 2)` to `"blue"`. |
| |
| Iterating over G.pred behaves like a dict. Useful idioms include |
| `for nbr, datadict in G.pred[n].items():`. A data-view not provided |
| by dicts also exists: `for nbr, foovalue in G.pred[node].data('foo'):` |
| A default can be set via a `default` argument to the `data` method. |
| """ |
| return AdjacencyView(self._pred) |
|
|
| def add_node(self, node_for_adding, **attr): |
| """Add a single node `node_for_adding` and update node attributes. |
| |
| Parameters |
| ---------- |
| node_for_adding : node |
| A node can be any hashable Python object except None. |
| attr : keyword arguments, optional |
| Set or change node attributes using key=value. |
| |
| See Also |
| -------- |
| add_nodes_from |
| |
| Examples |
| -------- |
| >>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> G.add_node(1) |
| >>> G.add_node("Hello") |
| >>> K3 = nx.Graph([(0, 1), (1, 2), (2, 0)]) |
| >>> G.add_node(K3) |
| >>> G.number_of_nodes() |
| 3 |
| |
| Use keywords set/change node attributes: |
| |
| >>> G.add_node(1, size=10) |
| >>> G.add_node(3, weight=0.4, UTM=("13S", 382871, 3972649)) |
| |
| Notes |
| ----- |
| A hashable object is one that can be used as a key in a Python |
| dictionary. This includes strings, numbers, tuples of strings |
| and numbers, etc. |
| |
| On many platforms hashable items also include mutables such as |
| NetworkX Graphs, though one should be careful that the hash |
| doesn't change on mutables. |
| """ |
| if node_for_adding not in self._succ: |
| if node_for_adding is None: |
| raise ValueError("None cannot be a node") |
| self._succ[node_for_adding] = self.adjlist_inner_dict_factory() |
| self._pred[node_for_adding] = self.adjlist_inner_dict_factory() |
| attr_dict = self._node[node_for_adding] = self.node_attr_dict_factory() |
| attr_dict.update(attr) |
| else: |
| self._node[node_for_adding].update(attr) |
| nx._clear_cache(self) |
|
|
| def add_nodes_from(self, nodes_for_adding, **attr): |
| """Add multiple nodes. |
| |
| Parameters |
| ---------- |
| nodes_for_adding : iterable container |
| A container of nodes (list, dict, set, etc.). |
| OR |
| A container of (node, attribute dict) tuples. |
| Node attributes are updated using the attribute dict. |
| attr : keyword arguments, optional (default= no attributes) |
| Update attributes for all nodes in nodes. |
| Node attributes specified in nodes as a tuple take |
| precedence over attributes specified via keyword arguments. |
| |
| See Also |
| -------- |
| add_node |
| |
| Notes |
| ----- |
| When adding nodes from an iterator over the graph you are changing, |
| a `RuntimeError` can be raised with message: |
| `RuntimeError: dictionary changed size during iteration`. This |
| happens when the graph's underlying dictionary is modified during |
| iteration. To avoid this error, evaluate the iterator into a separate |
| object, e.g. by using `list(iterator_of_nodes)`, and pass this |
| object to `G.add_nodes_from`. |
| |
| Examples |
| -------- |
| >>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> G.add_nodes_from("Hello") |
| >>> K3 = nx.Graph([(0, 1), (1, 2), (2, 0)]) |
| >>> G.add_nodes_from(K3) |
| >>> sorted(G.nodes(), key=str) |
| [0, 1, 2, 'H', 'e', 'l', 'o'] |
| |
| Use keywords to update specific node attributes for every node. |
| |
| >>> G.add_nodes_from([1, 2], size=10) |
| >>> G.add_nodes_from([3, 4], weight=0.4) |
| |
| Use (node, attrdict) tuples to update attributes for specific nodes. |
| |
| >>> G.add_nodes_from([(1, dict(size=11)), (2, {"color": "blue"})]) |
| >>> G.nodes[1]["size"] |
| 11 |
| >>> H = nx.Graph() |
| >>> H.add_nodes_from(G.nodes(data=True)) |
| >>> H.nodes[1]["size"] |
| 11 |
| |
| Evaluate an iterator over a graph if using it to modify the same graph |
| |
| >>> G = nx.DiGraph([(0, 1), (1, 2), (3, 4)]) |
| >>> # wrong way - will raise RuntimeError |
| >>> # G.add_nodes_from(n + 1 for n in G.nodes) |
| >>> # correct way |
| >>> G.add_nodes_from(list(n + 1 for n in G.nodes)) |
| """ |
| for n in nodes_for_adding: |
| try: |
| newnode = n not in self._node |
| newdict = attr |
| except TypeError: |
| n, ndict = n |
| newnode = n not in self._node |
| newdict = attr.copy() |
| newdict.update(ndict) |
| if newnode: |
| if n is None: |
| raise ValueError("None cannot be a node") |
| self._succ[n] = self.adjlist_inner_dict_factory() |
| self._pred[n] = self.adjlist_inner_dict_factory() |
| self._node[n] = self.node_attr_dict_factory() |
| self._node[n].update(newdict) |
| nx._clear_cache(self) |
|
|
| def remove_node(self, n): |
| """Remove node n. |
| |
| Removes the node n and all adjacent edges. |
| Attempting to remove a nonexistent node will raise an exception. |
| |
| Parameters |
| ---------- |
| n : node |
| A node in the graph |
| |
| Raises |
| ------ |
| NetworkXError |
| If n is not in the graph. |
| |
| See Also |
| -------- |
| remove_nodes_from |
| |
| Examples |
| -------- |
| >>> G = nx.path_graph(3) # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> list(G.edges) |
| [(0, 1), (1, 2)] |
| >>> G.remove_node(1) |
| >>> list(G.edges) |
| [] |
| |
| """ |
| try: |
| nbrs = self._succ[n] |
| del self._node[n] |
| except KeyError as err: |
| raise NetworkXError(f"The node {n} is not in the digraph.") from err |
| for u in nbrs: |
| del self._pred[u][n] |
| del self._succ[n] |
| for u in self._pred[n]: |
| del self._succ[u][n] |
| del self._pred[n] |
| nx._clear_cache(self) |
|
|
| def remove_nodes_from(self, nodes): |
| """Remove multiple nodes. |
| |
| Parameters |
| ---------- |
| nodes : iterable container |
| A container of nodes (list, dict, set, etc.). If a node |
| in the container is not in the graph it is silently ignored. |
| |
| See Also |
| -------- |
| remove_node |
| |
| Notes |
| ----- |
| When removing nodes from an iterator over the graph you are changing, |
| a `RuntimeError` will be raised with message: |
| `RuntimeError: dictionary changed size during iteration`. This |
| happens when the graph's underlying dictionary is modified during |
| iteration. To avoid this error, evaluate the iterator into a separate |
| object, e.g. by using `list(iterator_of_nodes)`, and pass this |
| object to `G.remove_nodes_from`. |
| |
| Examples |
| -------- |
| >>> G = nx.path_graph(3) # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> e = list(G.nodes) |
| >>> e |
| [0, 1, 2] |
| >>> G.remove_nodes_from(e) |
| >>> list(G.nodes) |
| [] |
| |
| Evaluate an iterator over a graph if using it to modify the same graph |
| |
| >>> G = nx.DiGraph([(0, 1), (1, 2), (3, 4)]) |
| >>> # this command will fail, as the graph's dict is modified during iteration |
| >>> # G.remove_nodes_from(n for n in G.nodes if n < 2) |
| >>> # this command will work, since the dictionary underlying graph is not modified |
| >>> G.remove_nodes_from(list(n for n in G.nodes if n < 2)) |
| """ |
| for n in nodes: |
| try: |
| succs = self._succ[n] |
| del self._node[n] |
| for u in succs: |
| del self._pred[u][n] |
| del self._succ[n] |
| for u in self._pred[n]: |
| del self._succ[u][n] |
| del self._pred[n] |
| except KeyError: |
| pass |
| nx._clear_cache(self) |
|
|
| def add_edge(self, u_of_edge, v_of_edge, **attr): |
| """Add an edge between u and v. |
| |
| The nodes u and v will be automatically added if they are |
| not already in the graph. |
| |
| Edge attributes can be specified with keywords or by directly |
| accessing the edge's attribute dictionary. See examples below. |
| |
| Parameters |
| ---------- |
| u_of_edge, v_of_edge : nodes |
| Nodes can be, for example, strings or numbers. |
| Nodes must be hashable (and not None) Python objects. |
| attr : keyword arguments, optional |
| Edge data (or labels or objects) can be assigned using |
| keyword arguments. |
| |
| See Also |
| -------- |
| add_edges_from : add a collection of edges |
| |
| Notes |
| ----- |
| Adding an edge that already exists updates the edge data. |
| |
| Many NetworkX algorithms designed for weighted graphs use |
| an edge attribute (by default `weight`) to hold a numerical value. |
| |
| Examples |
| -------- |
| The following all add the edge e=(1, 2) to graph G: |
| |
| >>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> e = (1, 2) |
| >>> G.add_edge(1, 2) # explicit two-node form |
| >>> G.add_edge(*e) # single edge as tuple of two nodes |
| >>> G.add_edges_from([(1, 2)]) # add edges from iterable container |
| |
| Associate data to edges using keywords: |
| |
| >>> G.add_edge(1, 2, weight=3) |
| >>> G.add_edge(1, 3, weight=7, capacity=15, length=342.7) |
| |
| For non-string attribute keys, use subscript notation. |
| |
| >>> G.add_edge(1, 2) |
| >>> G[1][2].update({0: 5}) |
| >>> G.edges[1, 2].update({0: 5}) |
| """ |
| u, v = u_of_edge, v_of_edge |
| |
| if u not in self._succ: |
| if u is None: |
| raise ValueError("None cannot be a node") |
| self._succ[u] = self.adjlist_inner_dict_factory() |
| self._pred[u] = self.adjlist_inner_dict_factory() |
| self._node[u] = self.node_attr_dict_factory() |
| if v not in self._succ: |
| if v is None: |
| raise ValueError("None cannot be a node") |
| self._succ[v] = self.adjlist_inner_dict_factory() |
| self._pred[v] = self.adjlist_inner_dict_factory() |
| self._node[v] = self.node_attr_dict_factory() |
| |
| datadict = self._adj[u].get(v, self.edge_attr_dict_factory()) |
| datadict.update(attr) |
| self._succ[u][v] = datadict |
| self._pred[v][u] = datadict |
| nx._clear_cache(self) |
|
|
| def add_edges_from(self, ebunch_to_add, **attr): |
| """Add all the edges in ebunch_to_add. |
| |
| Parameters |
| ---------- |
| ebunch_to_add : container of edges |
| Each edge given in the container will be added to the |
| graph. The edges must be given as 2-tuples (u, v) or |
| 3-tuples (u, v, d) where d is a dictionary containing edge data. |
| attr : keyword arguments, optional |
| Edge data (or labels or objects) can be assigned using |
| keyword arguments. |
| |
| See Also |
| -------- |
| add_edge : add a single edge |
| add_weighted_edges_from : convenient way to add weighted edges |
| |
| Notes |
| ----- |
| Adding the same edge twice has no effect but any edge data |
| will be updated when each duplicate edge is added. |
| |
| Edge attributes specified in an ebunch take precedence over |
| attributes specified via keyword arguments. |
| |
| When adding edges from an iterator over the graph you are changing, |
| a `RuntimeError` can be raised with message: |
| `RuntimeError: dictionary changed size during iteration`. This |
| happens when the graph's underlying dictionary is modified during |
| iteration. To avoid this error, evaluate the iterator into a separate |
| object, e.g. by using `list(iterator_of_edges)`, and pass this |
| object to `G.add_edges_from`. |
| |
| Examples |
| -------- |
| >>> G = nx.Graph() # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> G.add_edges_from([(0, 1), (1, 2)]) # using a list of edge tuples |
| >>> e = zip(range(0, 3), range(1, 4)) |
| >>> G.add_edges_from(e) # Add the path graph 0-1-2-3 |
| |
| Associate data to edges |
| |
| >>> G.add_edges_from([(1, 2), (2, 3)], weight=3) |
| >>> G.add_edges_from([(3, 4), (1, 4)], label="WN2898") |
| |
| Evaluate an iterator over a graph if using it to modify the same graph |
| |
| >>> G = nx.DiGraph([(1, 2), (2, 3), (3, 4)]) |
| >>> # Grow graph by one new node, adding edges to all existing nodes. |
| >>> # wrong way - will raise RuntimeError |
| >>> # G.add_edges_from(((5, n) for n in G.nodes)) |
| >>> # right way - note that there will be no self-edge for node 5 |
| >>> G.add_edges_from(list((5, n) for n in G.nodes)) |
| """ |
| for e in ebunch_to_add: |
| ne = len(e) |
| if ne == 3: |
| u, v, dd = e |
| elif ne == 2: |
| u, v = e |
| dd = {} |
| else: |
| raise NetworkXError(f"Edge tuple {e} must be a 2-tuple or 3-tuple.") |
| if u not in self._succ: |
| if u is None: |
| raise ValueError("None cannot be a node") |
| self._succ[u] = self.adjlist_inner_dict_factory() |
| self._pred[u] = self.adjlist_inner_dict_factory() |
| self._node[u] = self.node_attr_dict_factory() |
| if v not in self._succ: |
| if v is None: |
| raise ValueError("None cannot be a node") |
| self._succ[v] = self.adjlist_inner_dict_factory() |
| self._pred[v] = self.adjlist_inner_dict_factory() |
| self._node[v] = self.node_attr_dict_factory() |
| datadict = self._adj[u].get(v, self.edge_attr_dict_factory()) |
| datadict.update(attr) |
| datadict.update(dd) |
| self._succ[u][v] = datadict |
| self._pred[v][u] = datadict |
| nx._clear_cache(self) |
|
|
| def remove_edge(self, u, v): |
| """Remove the edge between u and v. |
| |
| Parameters |
| ---------- |
| u, v : nodes |
| Remove the edge between nodes u and v. |
| |
| Raises |
| ------ |
| NetworkXError |
| If there is not an edge between u and v. |
| |
| See Also |
| -------- |
| remove_edges_from : remove a collection of edges |
| |
| Examples |
| -------- |
| >>> G = nx.Graph() # or DiGraph, etc |
| >>> nx.add_path(G, [0, 1, 2, 3]) |
| >>> G.remove_edge(0, 1) |
| >>> e = (1, 2) |
| >>> G.remove_edge(*e) # unpacks e from an edge tuple |
| >>> e = (2, 3, {"weight": 7}) # an edge with attribute data |
| >>> G.remove_edge(*e[:2]) # select first part of edge tuple |
| """ |
| try: |
| del self._succ[u][v] |
| del self._pred[v][u] |
| except KeyError as err: |
| raise NetworkXError(f"The edge {u}-{v} not in graph.") from err |
| nx._clear_cache(self) |
|
|
| def remove_edges_from(self, ebunch): |
| """Remove all edges specified in ebunch. |
| |
| Parameters |
| ---------- |
| ebunch: list or container of edge tuples |
| Each edge given in the list or container will be removed |
| from the graph. The edges can be: |
| |
| - 2-tuples (u, v) edge between u and v. |
| - 3-tuples (u, v, k) where k is ignored. |
| |
| See Also |
| -------- |
| remove_edge : remove a single edge |
| |
| Notes |
| ----- |
| Will fail silently if an edge in ebunch is not in the graph. |
| |
| Examples |
| -------- |
| >>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> ebunch = [(1, 2), (2, 3)] |
| >>> G.remove_edges_from(ebunch) |
| """ |
| for e in ebunch: |
| u, v = e[:2] |
| if u in self._succ and v in self._succ[u]: |
| del self._succ[u][v] |
| del self._pred[v][u] |
| nx._clear_cache(self) |
|
|
| def has_successor(self, u, v): |
| """Returns True if node u has successor v. |
| |
| This is true if graph has the edge u->v. |
| """ |
| return u in self._succ and v in self._succ[u] |
|
|
| def has_predecessor(self, u, v): |
| """Returns True if node u has predecessor v. |
| |
| This is true if graph has the edge u<-v. |
| """ |
| return u in self._pred and v in self._pred[u] |
|
|
| def successors(self, n): |
| """Returns an iterator over successor nodes of n. |
| |
| A successor of n is a node m such that there exists a directed |
| edge from n to m. |
| |
| Parameters |
| ---------- |
| n : node |
| A node in the graph |
| |
| Raises |
| ------ |
| NetworkXError |
| If n is not in the graph. |
| |
| See Also |
| -------- |
| predecessors |
| |
| Notes |
| ----- |
| neighbors() and successors() are the same. |
| """ |
| try: |
| return iter(self._succ[n]) |
| except KeyError as err: |
| raise NetworkXError(f"The node {n} is not in the digraph.") from err |
|
|
| |
| neighbors = successors |
|
|
| def predecessors(self, n): |
| """Returns an iterator over predecessor nodes of n. |
| |
| A predecessor of n is a node m such that there exists a directed |
| edge from m to n. |
| |
| Parameters |
| ---------- |
| n : node |
| A node in the graph |
| |
| Raises |
| ------ |
| NetworkXError |
| If n is not in the graph. |
| |
| See Also |
| -------- |
| successors |
| """ |
| try: |
| return iter(self._pred[n]) |
| except KeyError as err: |
| raise NetworkXError(f"The node {n} is not in the digraph.") from err |
|
|
| @cached_property |
| def edges(self): |
| """An OutEdgeView of the DiGraph as G.edges or G.edges(). |
| |
| edges(self, nbunch=None, data=False, default=None) |
| |
| The OutEdgeView provides set-like operations on the edge-tuples |
| as well as edge attribute lookup. When called, it also provides |
| an EdgeDataView object which allows control of access to edge |
| attributes (but does not provide set-like operations). |
| Hence, `G.edges[u, v]['color']` provides the value of the color |
| attribute for edge `(u, v)` while |
| `for (u, v, c) in G.edges.data('color', default='red'):` |
| iterates through all the edges yielding the color attribute |
| with default `'red'` if no color attribute exists. |
| |
| Parameters |
| ---------- |
| nbunch : single node, container, or all nodes (default= all nodes) |
| The view will only report edges from these nodes. |
| data : string or bool, optional (default=False) |
| The edge attribute returned in 3-tuple (u, v, ddict[data]). |
| If True, return edge attribute dict in 3-tuple (u, v, ddict). |
| If False, return 2-tuple (u, v). |
| default : value, optional (default=None) |
| Value used for edges that don't have the requested attribute. |
| Only relevant if data is not True or False. |
| |
| Returns |
| ------- |
| edges : OutEdgeView |
| A view of edge attributes, usually it iterates over (u, v) |
| or (u, v, d) tuples of edges, but can also be used for |
| attribute lookup as `edges[u, v]['foo']`. |
| |
| See Also |
| -------- |
| in_edges, out_edges |
| |
| Notes |
| ----- |
| Nodes in nbunch that are not in the graph will be (quietly) ignored. |
| For directed graphs this returns the out-edges. |
| |
| Examples |
| -------- |
| >>> G = nx.DiGraph() # or MultiDiGraph, etc |
| >>> nx.add_path(G, [0, 1, 2]) |
| >>> G.add_edge(2, 3, weight=5) |
| >>> [e for e in G.edges] |
| [(0, 1), (1, 2), (2, 3)] |
| >>> G.edges.data() # default data is {} (empty dict) |
| OutEdgeDataView([(0, 1, {}), (1, 2, {}), (2, 3, {'weight': 5})]) |
| >>> G.edges.data("weight", default=1) |
| OutEdgeDataView([(0, 1, 1), (1, 2, 1), (2, 3, 5)]) |
| >>> G.edges([0, 2]) # only edges originating from these nodes |
| OutEdgeDataView([(0, 1), (2, 3)]) |
| >>> G.edges(0) # only edges from node 0 |
| OutEdgeDataView([(0, 1)]) |
| |
| """ |
| return OutEdgeView(self) |
|
|
| |
| @cached_property |
| def out_edges(self): |
| return OutEdgeView(self) |
|
|
| out_edges.__doc__ = edges.__doc__ |
|
|
| @cached_property |
| def in_edges(self): |
| """A view of the in edges of the graph as G.in_edges or G.in_edges(). |
| |
| in_edges(self, nbunch=None, data=False, default=None): |
| |
| Parameters |
| ---------- |
| nbunch : single node, container, or all nodes (default= all nodes) |
| The view will only report edges incident to these nodes. |
| data : string or bool, optional (default=False) |
| The edge attribute returned in 3-tuple (u, v, ddict[data]). |
| If True, return edge attribute dict in 3-tuple (u, v, ddict). |
| If False, return 2-tuple (u, v). |
| default : value, optional (default=None) |
| Value used for edges that don't have the requested attribute. |
| Only relevant if data is not True or False. |
| |
| Returns |
| ------- |
| in_edges : InEdgeView or InEdgeDataView |
| A view of edge attributes, usually it iterates over (u, v) |
| or (u, v, d) tuples of edges, but can also be used for |
| attribute lookup as `edges[u, v]['foo']`. |
| |
| Examples |
| -------- |
| >>> G = nx.DiGraph() |
| >>> G.add_edge(1, 2, color="blue") |
| >>> G.in_edges() |
| InEdgeView([(1, 2)]) |
| >>> G.in_edges(nbunch=2) |
| InEdgeDataView([(1, 2)]) |
| |
| See Also |
| -------- |
| edges |
| """ |
| return InEdgeView(self) |
|
|
| @cached_property |
| def degree(self): |
| """A DegreeView for the Graph as G.degree or G.degree(). |
| |
| The node degree is the number of edges adjacent to the node. |
| The weighted node degree is the sum of the edge weights for |
| edges incident to that node. |
| |
| This object provides an iterator for (node, degree) as well as |
| lookup for the degree for a single node. |
| |
| Parameters |
| ---------- |
| nbunch : single node, container, or all nodes (default= all nodes) |
| The view will only report edges incident to these nodes. |
| |
| weight : string or None, optional (default=None) |
| The name of an edge attribute that holds the numerical value used |
| as a weight. If None, then each edge has weight 1. |
| The degree is the sum of the edge weights adjacent to the node. |
| |
| Returns |
| ------- |
| DiDegreeView or int |
| If multiple nodes are requested (the default), returns a `DiDegreeView` |
| mapping nodes to their degree. |
| If a single node is requested, returns the degree of the node as an integer. |
| |
| See Also |
| -------- |
| in_degree, out_degree |
| |
| Examples |
| -------- |
| >>> G = nx.DiGraph() # or MultiDiGraph |
| >>> nx.add_path(G, [0, 1, 2, 3]) |
| >>> G.degree(0) # node 0 with degree 1 |
| 1 |
| >>> list(G.degree([0, 1, 2])) |
| [(0, 1), (1, 2), (2, 2)] |
| |
| """ |
| return DiDegreeView(self) |
|
|
| @cached_property |
| def in_degree(self): |
| """An InDegreeView for (node, in_degree) or in_degree for single node. |
| |
| The node in_degree is the number of edges pointing to the node. |
| The weighted node degree is the sum of the edge weights for |
| edges incident to that node. |
| |
| This object provides an iteration over (node, in_degree) as well as |
| lookup for the degree for a single node. |
| |
| Parameters |
| ---------- |
| nbunch : single node, container, or all nodes (default= all nodes) |
| The view will only report edges incident to these nodes. |
| |
| weight : string or None, optional (default=None) |
| The name of an edge attribute that holds the numerical value used |
| as a weight. If None, then each edge has weight 1. |
| The degree is the sum of the edge weights adjacent to the node. |
| |
| Returns |
| ------- |
| If a single node is requested |
| deg : int |
| In-degree of the node |
| |
| OR if multiple nodes are requested |
| nd_iter : iterator |
| The iterator returns two-tuples of (node, in-degree). |
| |
| See Also |
| -------- |
| degree, out_degree |
| |
| Examples |
| -------- |
| >>> G = nx.DiGraph() |
| >>> nx.add_path(G, [0, 1, 2, 3]) |
| >>> G.in_degree(0) # node 0 with degree 0 |
| 0 |
| >>> list(G.in_degree([0, 1, 2])) |
| [(0, 0), (1, 1), (2, 1)] |
| |
| """ |
| return InDegreeView(self) |
|
|
| @cached_property |
| def out_degree(self): |
| """An OutDegreeView for (node, out_degree) |
| |
| The node out_degree is the number of edges pointing out of the node. |
| The weighted node degree is the sum of the edge weights for |
| edges incident to that node. |
| |
| This object provides an iterator over (node, out_degree) as well as |
| lookup for the degree for a single node. |
| |
| Parameters |
| ---------- |
| nbunch : single node, container, or all nodes (default= all nodes) |
| The view will only report edges incident to these nodes. |
| |
| weight : string or None, optional (default=None) |
| The name of an edge attribute that holds the numerical value used |
| as a weight. If None, then each edge has weight 1. |
| The degree is the sum of the edge weights adjacent to the node. |
| |
| Returns |
| ------- |
| If a single node is requested |
| deg : int |
| Out-degree of the node |
| |
| OR if multiple nodes are requested |
| nd_iter : iterator |
| The iterator returns two-tuples of (node, out-degree). |
| |
| See Also |
| -------- |
| degree, in_degree |
| |
| Examples |
| -------- |
| >>> G = nx.DiGraph() |
| >>> nx.add_path(G, [0, 1, 2, 3]) |
| >>> G.out_degree(0) # node 0 with degree 1 |
| 1 |
| >>> list(G.out_degree([0, 1, 2])) |
| [(0, 1), (1, 1), (2, 1)] |
| |
| """ |
| return OutDegreeView(self) |
|
|
| def clear(self): |
| """Remove all nodes and edges from the graph. |
| |
| This also removes the name, and all graph, node, and edge attributes. |
| |
| Examples |
| -------- |
| >>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> G.clear() |
| >>> list(G.nodes) |
| [] |
| >>> list(G.edges) |
| [] |
| |
| """ |
| self._succ.clear() |
| self._pred.clear() |
| self._node.clear() |
| self.graph.clear() |
| nx._clear_cache(self) |
|
|
| def clear_edges(self): |
| """Remove all edges from the graph without altering nodes. |
| |
| Examples |
| -------- |
| >>> G = nx.path_graph(4) # or DiGraph, MultiGraph, MultiDiGraph, etc |
| >>> G.clear_edges() |
| >>> list(G.nodes) |
| [0, 1, 2, 3] |
| >>> list(G.edges) |
| [] |
| |
| """ |
| for predecessor_dict in self._pred.values(): |
| predecessor_dict.clear() |
| for successor_dict in self._succ.values(): |
| successor_dict.clear() |
| nx._clear_cache(self) |
|
|
| def is_multigraph(self): |
| """Returns True if graph is a multigraph, False otherwise.""" |
| return False |
|
|
| def is_directed(self): |
| """Returns True if graph is directed, False otherwise.""" |
| return True |
|
|
| def to_undirected(self, reciprocal=False, as_view=False): |
| """Returns an undirected representation of the digraph. |
| |
| Parameters |
| ---------- |
| reciprocal : bool (optional) |
| If True only keep edges that appear in both directions |
| in the original digraph. |
| as_view : bool (optional, default=False) |
| If True return an undirected view of the original directed graph. |
| |
| Returns |
| ------- |
| G : Graph |
| An undirected graph with the same name and nodes and |
| with edge (u, v, data) if either (u, v, data) or (v, u, data) |
| is in the digraph. If both edges exist in digraph and |
| their edge data is different, only one edge is created |
| with an arbitrary choice of which edge data to use. |
| You must check and correct for this manually if desired. |
| |
| See Also |
| -------- |
| Graph, copy, add_edge, add_edges_from |
| |
| Notes |
| ----- |
| If edges in both directions (u, v) and (v, u) exist in the |
| graph, attributes for the new undirected edge will be a combination of |
| the attributes of the directed edges. The edge data is updated |
| in the (arbitrary) order that the edges are encountered. For |
| more customized control of the edge attributes use add_edge(). |
| |
| This returns a "deepcopy" of the edge, node, and |
| graph attributes which attempts to completely copy |
| all of the data and references. |
| |
| This is in contrast to the similar G=DiGraph(D) which returns a |
| shallow copy of the data. |
| |
| See the Python copy module for more information on shallow |
| and deep copies, https://docs.python.org/3/library/copy.html. |
| |
| Warning: If you have subclassed DiGraph to use dict-like objects |
| in the data structure, those changes do not transfer to the |
| Graph created by this method. |
| |
| Examples |
| -------- |
| >>> G = nx.path_graph(2) # or MultiGraph, etc |
| >>> H = G.to_directed() |
| >>> list(H.edges) |
| [(0, 1), (1, 0)] |
| >>> G2 = H.to_undirected() |
| >>> list(G2.edges) |
| [(0, 1)] |
| """ |
| graph_class = self.to_undirected_class() |
| if as_view is True: |
| return nx.graphviews.generic_graph_view(self, graph_class) |
| |
| G = graph_class() |
| G.graph.update(deepcopy(self.graph)) |
| G.add_nodes_from((n, deepcopy(d)) for n, d in self._node.items()) |
| if reciprocal is True: |
| G.add_edges_from( |
| (u, v, deepcopy(d)) |
| for u, nbrs in self._adj.items() |
| for v, d in nbrs.items() |
| if v in self._pred[u] |
| ) |
| else: |
| G.add_edges_from( |
| (u, v, deepcopy(d)) |
| for u, nbrs in self._adj.items() |
| for v, d in nbrs.items() |
| ) |
| return G |
|
|
| def reverse(self, copy=True): |
| """Returns the reverse of the graph. |
| |
| The reverse is a graph with the same nodes and edges |
| but with the directions of the edges reversed. |
| |
| Parameters |
| ---------- |
| copy : bool optional (default=True) |
| If True, return a new DiGraph holding the reversed edges. |
| If False, the reverse graph is created using a view of |
| the original graph. |
| """ |
| if copy: |
| H = self.__class__() |
| H.graph.update(deepcopy(self.graph)) |
| H.add_nodes_from((n, deepcopy(d)) for n, d in self.nodes.items()) |
| H.add_edges_from((v, u, deepcopy(d)) for u, v, d in self.edges(data=True)) |
| return H |
| return nx.reverse_view(self) |
|
|