Update README.md

README.md

@@ -13,7 +13,26 @@ pip install --upgrade git+https://github.com/huggingface/transformers.git
 pip install torch
 ```
 
-A small snippet of code is given here in order to infer with the model from a given input.
+A small snippet of code is given here in order to **generate sequences from a pipeline (high-level)**.
+
+```
+# Load pipeline
+from transformers import pipeline
+pipe = pipeline(model="InstaDeepAI/ChatNT-text-generation-pipeline", trust_remote_code=True)
+
+# Define custom inputs (note that the number of <DNA> token in the english sequence must be equal to len(dna_sequences))
+english_sequence = "A chat between a curious user and an artificial intelligence assistant that can handle bio sequences. The assistant gives helpful, detailed, and polite answers to the user's questions. USER: Is there any evidence of an acceptor splice site in this sequence <DNA> ?"
+dna_sequences = ["ATCGGAAAAAGATCCAGAAAGTTATACCAGGCCAATGGGAATCACCTATTACGTGGATAATAGCGATAGTATGTTACCTATAAATTTAACTACGTGGATATCAGGCAGTTACGTTACCAGTCAAGGAGCACCCAAAACTGTCCAGCAACAAGTTAATTTACCCATGAAGATGTACTGCAAGCCTTGCCAACCAGTTAAAGTAGCTACTCATAAGGTAATAAACAGTAATATCGACTTTTTATCCATTTTGATAATTGATTTATAACAGTCTATAACTGATCGCTCTACATAATCTCTATCAGATTACTATTGACACAAACAGAAACCCCGTTAATTTGTATGATATATTTCCCGGTAAGCTTCGATTTTTAATCCTATCGTGACAATTTGGAATGTAACTTATTTCGTATAGGATAAACTAATTTACACGTTTGAATTCCTAGAATATGGAGAATCTAAAGGTCCTGGCAATGCCATCGGCTTTCAATATTATAATGGACCAAAAGTTACTCTATTAGCTTCCAAAACTTCGCGTGAGTACATTAGAACAGAAGAATAACCTTCAATATCGAGAGAGTTACTATCACTAACTATCCTATG"]
+
+# Generate sequence
+generated_english_sequence = pipe(
+    inputs={"english_sequence": english_sequence, "dna_sequences": dna_sequences},
+    english_tokens_max_length=512, # this value is used to pad or truncate the english tokens
+    bio_tokens_max_length=512, # this value is used to pad or truncate the DNA tokens
+)
+```
+
+A small snippet of code is given here in order to **infer with the model without any abstraction (low-level)**.
 
 ```
 import numpy as np