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README.md
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**This is repository for MutBERT (pretrained with mutation data in human genome)**.
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## Introduction
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This is the official pre-trained model introduced in MutBERT: Probabilistic Genome Representation Improves Genomics Foundation Models.
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from transformers import AutoTokenizer, AutoModel
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model_name = "JadenLong/MutBERT"
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tokenizer = AutoTokenizer.from_pretrained(model_name)
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model = AutoModel.from_pretrained(model_name, trust_remote_code=True)
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```
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from transformers import AutoTokenizer, AutoModel
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model_name = "JadenLong/MutBERT"
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tokenizer = AutoTokenizer.from_pretrained(model_name)
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model = AutoModel.from_pretrained(model_name, trust_remote_code=True)
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from transformers import AutoModelForSequenceClassification
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model_name = "JadenLong/MutBERT"
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model = AutoModelForSequenceClassification.from_pretrained(model_name, trust_remote_code=True, num_labels=2)
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```
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```python
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model_name = "JadenLong/MutBERT"
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model = AutoModel.from_pretrained(model_name,
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trust_remote_code=True,
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rope_scaling={'type': 'dynamic','factor': 2.0}
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**This is repository for MutBERT (pretrained with mutation data in human genome)**.
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**You can find all MutBERT variants at [here](https://huggingface.co/JadenLong).**
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## Introduction
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This is the official pre-trained model introduced in MutBERT: Probabilistic Genome Representation Improves Genomics Foundation Models.
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from transformers import AutoTokenizer, AutoModel
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model_name = "JadenLong/MutBERT"
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# Optional: JadenLong/MutBERT-Huamn-Ref, JadenLong/MutBERT-Multi
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tokenizer = AutoTokenizer.from_pretrained(model_name)
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model = AutoModel.from_pretrained(model_name, trust_remote_code=True)
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```
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from transformers import AutoTokenizer, AutoModel
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model_name = "JadenLong/MutBERT"
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# Optional: JadenLong/MutBERT-Huamn-Ref, JadenLong/MutBERT-Multi
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tokenizer = AutoTokenizer.from_pretrained(model_name)
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model = AutoModel.from_pretrained(model_name, trust_remote_code=True)
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from transformers import AutoModelForSequenceClassification
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model_name = "JadenLong/MutBERT"
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# Optional: JadenLong/MutBERT-Huamn-Ref, JadenLong/MutBERT-Multi
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model = AutoModelForSequenceClassification.from_pretrained(model_name, trust_remote_code=True, num_labels=2)
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```
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```python
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model_name = "JadenLong/MutBERT"
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# Optional: JadenLong/MutBERT-Huamn-Ref, JadenLong/MutBERT-Multi
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model = AutoModel.from_pretrained(model_name,
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trust_remote_code=True,
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rope_scaling={'type': 'dynamic','factor': 2.0}
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