tmp
/
pip-install-ghxuqwgs
/numpy_78e94bf2b6094bf9a1f3d92042f9bf46
/numpy
/lib
/tests
/test_format.py
| from __future__ import division, absolute_import, print_function | |
| r''' Test the .npy file format. | |
| Set up: | |
| >>> import sys | |
| >>> from io import BytesIO | |
| >>> from numpy.lib import format | |
| >>> | |
| >>> scalars = [ | |
| ... np.uint8, | |
| ... np.int8, | |
| ... np.uint16, | |
| ... np.int16, | |
| ... np.uint32, | |
| ... np.int32, | |
| ... np.uint64, | |
| ... np.int64, | |
| ... np.float32, | |
| ... np.float64, | |
| ... np.complex64, | |
| ... np.complex128, | |
| ... object, | |
| ... ] | |
| >>> | |
| >>> basic_arrays = [] | |
| >>> | |
| >>> for scalar in scalars: | |
| ... for endian in '<>': | |
| ... dtype = np.dtype(scalar).newbyteorder(endian) | |
| ... basic = np.arange(15).astype(dtype) | |
| ... basic_arrays.extend([ | |
| ... np.array([], dtype=dtype), | |
| ... np.array(10, dtype=dtype), | |
| ... basic, | |
| ... basic.reshape((3,5)), | |
| ... basic.reshape((3,5)).T, | |
| ... basic.reshape((3,5))[::-1,::2], | |
| ... ]) | |
| ... | |
| >>> | |
| >>> Pdescr = [ | |
| ... ('x', 'i4', (2,)), | |
| ... ('y', 'f8', (2, 2)), | |
| ... ('z', 'u1')] | |
| >>> | |
| >>> | |
| >>> PbufferT = [ | |
| ... ([3,2], [[6.,4.],[6.,4.]], 8), | |
| ... ([4,3], [[7.,5.],[7.,5.]], 9), | |
| ... ] | |
| >>> | |
| >>> | |
| >>> Ndescr = [ | |
| ... ('x', 'i4', (2,)), | |
| ... ('Info', [ | |
| ... ('value', 'c16'), | |
| ... ('y2', 'f8'), | |
| ... ('Info2', [ | |
| ... ('name', 'S2'), | |
| ... ('value', 'c16', (2,)), | |
| ... ('y3', 'f8', (2,)), | |
| ... ('z3', 'u4', (2,))]), | |
| ... ('name', 'S2'), | |
| ... ('z2', 'b1')]), | |
| ... ('color', 'S2'), | |
| ... ('info', [ | |
| ... ('Name', 'U8'), | |
| ... ('Value', 'c16')]), | |
| ... ('y', 'f8', (2, 2)), | |
| ... ('z', 'u1')] | |
| >>> | |
| >>> | |
| >>> NbufferT = [ | |
| ... ([3,2], (6j, 6., ('nn', [6j,4j], [6.,4.], [1,2]), 'NN', True), 'cc', ('NN', 6j), [[6.,4.],[6.,4.]], 8), | |
| ... ([4,3], (7j, 7., ('oo', [7j,5j], [7.,5.], [2,1]), 'OO', False), 'dd', ('OO', 7j), [[7.,5.],[7.,5.]], 9), | |
| ... ] | |
| >>> | |
| >>> | |
| >>> record_arrays = [ | |
| ... np.array(PbufferT, dtype=np.dtype(Pdescr).newbyteorder('<')), | |
| ... np.array(NbufferT, dtype=np.dtype(Ndescr).newbyteorder('<')), | |
| ... np.array(PbufferT, dtype=np.dtype(Pdescr).newbyteorder('>')), | |
| ... np.array(NbufferT, dtype=np.dtype(Ndescr).newbyteorder('>')), | |
| ... ] | |
| Test the magic string writing. | |
| >>> format.magic(1, 0) | |
| '\x93NUMPY\x01\x00' | |
| >>> format.magic(0, 0) | |
| '\x93NUMPY\x00\x00' | |
| >>> format.magic(255, 255) | |
| '\x93NUMPY\xff\xff' | |
| >>> format.magic(2, 5) | |
| '\x93NUMPY\x02\x05' | |
| Test the magic string reading. | |
| >>> format.read_magic(BytesIO(format.magic(1, 0))) | |
| (1, 0) | |
| >>> format.read_magic(BytesIO(format.magic(0, 0))) | |
| (0, 0) | |
| >>> format.read_magic(BytesIO(format.magic(255, 255))) | |
| (255, 255) | |
| >>> format.read_magic(BytesIO(format.magic(2, 5))) | |
| (2, 5) | |
| Test the header writing. | |
| >>> for arr in basic_arrays + record_arrays: | |
| ... f = BytesIO() | |
| ... format.write_array_header_1_0(f, arr) # XXX: arr is not a dict, items gets called on it | |
| ... print repr(f.getvalue()) | |
| ... | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '|u1', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '|i1', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<u2', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<u2', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<u2', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<u2', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<u2', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<u2', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>u2', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>u2', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>u2', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>u2', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>u2', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>u2', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<i2', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<i2', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<i2', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<i2', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<i2', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<i2', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>i2', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>i2', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>i2', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>i2', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>i2', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>i2', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<u4', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<u4', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<u4', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<u4', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<u4', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<u4', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>u4', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>u4', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>u4', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>u4', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>u4', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>u4', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<i4', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<i4', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<i4', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<i4', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<i4', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<i4', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>i4', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>i4', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>i4', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>i4', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>i4', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>i4', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<u8', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<u8', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<u8', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<u8', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<u8', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<u8', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>u8', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>u8', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>u8', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>u8', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>u8', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>u8', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<i8', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<i8', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<i8', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<i8', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<i8', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<i8', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>i8', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>i8', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>i8', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>i8', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>i8', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>i8', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<f4', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<f4', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<f4', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<f4', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<f4', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<f4', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>f4', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>f4', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>f4', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>f4', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>f4', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>f4', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<f8', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<f8', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<f8', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<f8', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<f8', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<f8', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>f8', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>f8', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>f8', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>f8', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>f8', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>f8', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<c8', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<c8', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<c8', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<c8', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<c8', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<c8', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>c8', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>c8', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>c8', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>c8', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>c8', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>c8', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '<c16', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '<c16', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '<c16', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '<c16', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '<c16', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '<c16', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': '>c16', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': '>c16', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': '>c16', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': '>c16', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': '>c16', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': '>c16', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (0,)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': ()} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (15,)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (3, 5)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': True, 'shape': (5, 3)} \n" | |
| "F\x00{'descr': 'O', 'fortran_order': False, 'shape': (3, 3)} \n" | |
| "v\x00{'descr': [('x', '<i4', (2,)), ('y', '<f8', (2, 2)), ('z', '|u1')],\n 'fortran_order': False,\n 'shape': (2,)} \n" | |
| "\x16\x02{'descr': [('x', '<i4', (2,)),\n ('Info',\n [('value', '<c16'),\n ('y2', '<f8'),\n ('Info2',\n [('name', '|S2'),\n ('value', '<c16', (2,)),\n ('y3', '<f8', (2,)),\n ('z3', '<u4', (2,))]),\n ('name', '|S2'),\n ('z2', '|b1')]),\n ('color', '|S2'),\n ('info', [('Name', '<U8'), ('Value', '<c16')]),\n ('y', '<f8', (2, 2)),\n ('z', '|u1')],\n 'fortran_order': False,\n 'shape': (2,)} \n" | |
| "v\x00{'descr': [('x', '>i4', (2,)), ('y', '>f8', (2, 2)), ('z', '|u1')],\n 'fortran_order': False,\n 'shape': (2,)} \n" | |
| "\x16\x02{'descr': [('x', '>i4', (2,)),\n ('Info',\n [('value', '>c16'),\n ('y2', '>f8'),\n ('Info2',\n [('name', '|S2'),\n ('value', '>c16', (2,)),\n ('y3', '>f8', (2,)),\n ('z3', '>u4', (2,))]),\n ('name', '|S2'),\n ('z2', '|b1')]),\n ('color', '|S2'),\n ('info', [('Name', '>U8'), ('Value', '>c16')]),\n ('y', '>f8', (2, 2)),\n ('z', '|u1')],\n 'fortran_order': False,\n 'shape': (2,)} \n" | |
| ''' | |
| import sys | |
| import os | |
| import shutil | |
| import tempfile | |
| import warnings | |
| from io import BytesIO | |
| import numpy as np | |
| from numpy.compat import asbytes, asbytes_nested | |
| from numpy.testing import ( | |
| run_module_suite, assert_, assert_array_equal, assert_raises, raises, | |
| dec | |
| ) | |
| from numpy.lib import format | |
| tempdir = None | |
| # Module-level setup. | |
| def setup_module(): | |
| global tempdir | |
| tempdir = tempfile.mkdtemp() | |
| def teardown_module(): | |
| global tempdir | |
| if tempdir is not None and os.path.isdir(tempdir): | |
| shutil.rmtree(tempdir) | |
| tempdir = None | |
| # Generate some basic arrays to test with. | |
| scalars = [ | |
| np.uint8, | |
| np.int8, | |
| np.uint16, | |
| np.int16, | |
| np.uint32, | |
| np.int32, | |
| np.uint64, | |
| np.int64, | |
| np.float32, | |
| np.float64, | |
| np.complex64, | |
| np.complex128, | |
| object, | |
| ] | |
| basic_arrays = [] | |
| for scalar in scalars: | |
| for endian in '<>': | |
| dtype = np.dtype(scalar).newbyteorder(endian) | |
| basic = np.arange(1500).astype(dtype) | |
| basic_arrays.extend([ | |
| # Empty | |
| np.array([], dtype=dtype), | |
| # Rank-0 | |
| np.array(10, dtype=dtype), | |
| # 1-D | |
| basic, | |
| # 2-D C-contiguous | |
| basic.reshape((30, 50)), | |
| # 2-D F-contiguous | |
| basic.reshape((30, 50)).T, | |
| # 2-D non-contiguous | |
| basic.reshape((30, 50))[::-1, ::2], | |
| ]) | |
| # More complicated record arrays. | |
| # This is the structure of the table used for plain objects: | |
| # | |
| # +-+-+-+ | |
| # |x|y|z| | |
| # +-+-+-+ | |
| # Structure of a plain array description: | |
| Pdescr = [ | |
| ('x', 'i4', (2,)), | |
| ('y', 'f8', (2, 2)), | |
| ('z', 'u1')] | |
| # A plain list of tuples with values for testing: | |
| PbufferT = [ | |
| # x y z | |
| ([3, 2], [[6., 4.], [6., 4.]], 8), | |
| ([4, 3], [[7., 5.], [7., 5.]], 9), | |
| ] | |
| # This is the structure of the table used for nested objects (DON'T PANIC!): | |
| # | |
| # +-+---------------------------------+-----+----------+-+-+ | |
| # |x|Info |color|info |y|z| | |
| # | +-----+--+----------------+----+--+ +----+-----+ | | | |
| # | |value|y2|Info2 |name|z2| |Name|Value| | | | |
| # | | | +----+-----+--+--+ | | | | | | | | |
| # | | | |name|value|y3|z3| | | | | | | | | |
| # +-+-----+--+----+-----+--+--+----+--+-----+----+-----+-+-+ | |
| # | |
| # The corresponding nested array description: | |
| Ndescr = [ | |
| ('x', 'i4', (2,)), | |
| ('Info', [ | |
| ('value', 'c16'), | |
| ('y2', 'f8'), | |
| ('Info2', [ | |
| ('name', 'S2'), | |
| ('value', 'c16', (2,)), | |
| ('y3', 'f8', (2,)), | |
| ('z3', 'u4', (2,))]), | |
| ('name', 'S2'), | |
| ('z2', 'b1')]), | |
| ('color', 'S2'), | |
| ('info', [ | |
| ('Name', 'U8'), | |
| ('Value', 'c16')]), | |
| ('y', 'f8', (2, 2)), | |
| ('z', 'u1')] | |
| NbufferT = [ | |
| # x Info color info y z | |
| # value y2 Info2 name z2 Name Value | |
| # name value y3 z3 | |
| ([3, 2], (6j, 6., ('nn', [6j, 4j], [6., 4.], [1, 2]), 'NN', True), | |
| 'cc', ('NN', 6j), [[6., 4.], [6., 4.]], 8), | |
| ([4, 3], (7j, 7., ('oo', [7j, 5j], [7., 5.], [2, 1]), 'OO', False), | |
| 'dd', ('OO', 7j), [[7., 5.], [7., 5.]], 9), | |
| ] | |
| record_arrays = [ | |
| np.array(PbufferT, dtype=np.dtype(Pdescr).newbyteorder('<')), | |
| np.array(NbufferT, dtype=np.dtype(Ndescr).newbyteorder('<')), | |
| np.array(PbufferT, dtype=np.dtype(Pdescr).newbyteorder('>')), | |
| np.array(NbufferT, dtype=np.dtype(Ndescr).newbyteorder('>')), | |
| ] | |
| #BytesIO that reads a random number of bytes at a time | |
| class BytesIOSRandomSize(BytesIO): | |
| def read(self, size=None): | |
| import random | |
| size = random.randint(1, size) | |
| return super(BytesIOSRandomSize, self).read(size) | |
| def roundtrip(arr): | |
| f = BytesIO() | |
| format.write_array(f, arr) | |
| f2 = BytesIO(f.getvalue()) | |
| arr2 = format.read_array(f2) | |
| return arr2 | |
| def roundtrip_randsize(arr): | |
| f = BytesIO() | |
| format.write_array(f, arr) | |
| f2 = BytesIOSRandomSize(f.getvalue()) | |
| arr2 = format.read_array(f2) | |
| return arr2 | |
| def roundtrip_truncated(arr): | |
| f = BytesIO() | |
| format.write_array(f, arr) | |
| #BytesIO is one byte short | |
| f2 = BytesIO(f.getvalue()[0:-1]) | |
| arr2 = format.read_array(f2) | |
| return arr2 | |
| def assert_equal_(o1, o2): | |
| assert_(o1 == o2) | |
| def test_roundtrip(): | |
| for arr in basic_arrays + record_arrays: | |
| arr2 = roundtrip(arr) | |
| yield assert_array_equal, arr, arr2 | |
| def test_roundtrip_randsize(): | |
| for arr in basic_arrays + record_arrays: | |
| if arr.dtype != object: | |
| arr2 = roundtrip_randsize(arr) | |
| yield assert_array_equal, arr, arr2 | |
| def test_roundtrip_truncated(): | |
| for arr in basic_arrays: | |
| if arr.dtype != object: | |
| yield assert_raises, ValueError, roundtrip_truncated, arr | |
| def test_long_str(): | |
| # check items larger than internal buffer size, gh-4027 | |
| long_str_arr = np.ones(1, dtype=np.dtype((str, format.BUFFER_SIZE + 1))) | |
| long_str_arr2 = roundtrip(long_str_arr) | |
| assert_array_equal(long_str_arr, long_str_arr2) | |
| def test_memmap_roundtrip(): | |
| # Fixme: test crashes nose on windows. | |
| if not (sys.platform == 'win32' or sys.platform == 'cygwin'): | |
| for arr in basic_arrays + record_arrays: | |
| if arr.dtype.hasobject: | |
| # Skip these since they can't be mmap'ed. | |
| continue | |
| # Write it out normally and through mmap. | |
| nfn = os.path.join(tempdir, 'normal.npy') | |
| mfn = os.path.join(tempdir, 'memmap.npy') | |
| fp = open(nfn, 'wb') | |
| try: | |
| format.write_array(fp, arr) | |
| finally: | |
| fp.close() | |
| fortran_order = ( | |
| arr.flags.f_contiguous and not arr.flags.c_contiguous) | |
| ma = format.open_memmap(mfn, mode='w+', dtype=arr.dtype, | |
| shape=arr.shape, fortran_order=fortran_order) | |
| ma[...] = arr | |
| del ma | |
| # Check that both of these files' contents are the same. | |
| fp = open(nfn, 'rb') | |
| normal_bytes = fp.read() | |
| fp.close() | |
| fp = open(mfn, 'rb') | |
| memmap_bytes = fp.read() | |
| fp.close() | |
| yield assert_equal_, normal_bytes, memmap_bytes | |
| # Check that reading the file using memmap works. | |
| ma = format.open_memmap(nfn, mode='r') | |
| del ma | |
| def test_compressed_roundtrip(): | |
| arr = np.random.rand(200, 200) | |
| npz_file = os.path.join(tempdir, 'compressed.npz') | |
| np.savez_compressed(npz_file, arr=arr) | |
| arr1 = np.load(npz_file)['arr'] | |
| assert_array_equal(arr, arr1) | |
| def test_version_2_0(): | |
| f = BytesIO() | |
| # requires more than 2 byte for header | |
| dt = [(("%d" % i) * 100, float) for i in range(500)] | |
| d = np.ones(1000, dtype=dt) | |
| format.write_array(f, d, version=(2, 0)) | |
| with warnings.catch_warnings(record=True) as w: | |
| warnings.filterwarnings('always', '', UserWarning) | |
| format.write_array(f, d) | |
| assert_(w[0].category is UserWarning) | |
| f.seek(0) | |
| n = format.read_array(f) | |
| assert_array_equal(d, n) | |
| # 1.0 requested but data cannot be saved this way | |
| assert_raises(ValueError, format.write_array, f, d, (1, 0)) | |
| def test_version_2_0_memmap(): | |
| # requires more than 2 byte for header | |
| dt = [(("%d" % i) * 100, float) for i in range(500)] | |
| d = np.ones(1000, dtype=dt) | |
| tf = tempfile.mktemp('', 'mmap', dir=tempdir) | |
| # 1.0 requested but data cannot be saved this way | |
| assert_raises(ValueError, format.open_memmap, tf, mode='w+', dtype=d.dtype, | |
| shape=d.shape, version=(1, 0)) | |
| ma = format.open_memmap(tf, mode='w+', dtype=d.dtype, | |
| shape=d.shape, version=(2, 0)) | |
| ma[...] = d | |
| del ma | |
| with warnings.catch_warnings(record=True) as w: | |
| warnings.filterwarnings('always', '', UserWarning) | |
| ma = format.open_memmap(tf, mode='w+', dtype=d.dtype, | |
| shape=d.shape, version=None) | |
| assert_(w[0].category is UserWarning) | |
| ma[...] = d | |
| del ma | |
| ma = format.open_memmap(tf, mode='r') | |
| assert_array_equal(ma, d) | |
| def test_write_version(): | |
| f = BytesIO() | |
| arr = np.arange(1) | |
| # These should pass. | |
| format.write_array(f, arr, version=(1, 0)) | |
| format.write_array(f, arr) | |
| format.write_array(f, arr, version=None) | |
| format.write_array(f, arr) | |
| format.write_array(f, arr, version=(2, 0)) | |
| format.write_array(f, arr) | |
| # These should all fail. | |
| bad_versions = [ | |
| (1, 1), | |
| (0, 0), | |
| (0, 1), | |
| (2, 2), | |
| (255, 255), | |
| ] | |
| for version in bad_versions: | |
| try: | |
| format.write_array(f, arr, version=version) | |
| except ValueError: | |
| pass | |
| else: | |
| raise AssertionError("we should have raised a ValueError for the bad version %r" % (version,)) | |
| bad_version_magic = asbytes_nested([ | |
| '\x93NUMPY\x01\x01', | |
| '\x93NUMPY\x00\x00', | |
| '\x93NUMPY\x00\x01', | |
| '\x93NUMPY\x02\x00', | |
| '\x93NUMPY\x02\x02', | |
| '\x93NUMPY\xff\xff', | |
| ]) | |
| malformed_magic = asbytes_nested([ | |
| '\x92NUMPY\x01\x00', | |
| '\x00NUMPY\x01\x00', | |
| '\x93numpy\x01\x00', | |
| '\x93MATLB\x01\x00', | |
| '\x93NUMPY\x01', | |
| '\x93NUMPY', | |
| '', | |
| ]) | |
| def test_read_magic_bad_magic(): | |
| for magic in malformed_magic: | |
| f = BytesIO(magic) | |
| yield raises(ValueError)(format.read_magic), f | |
| def test_read_version_1_0_bad_magic(): | |
| for magic in bad_version_magic + malformed_magic: | |
| f = BytesIO(magic) | |
| yield raises(ValueError)(format.read_array), f | |
| def test_bad_magic_args(): | |
| assert_raises(ValueError, format.magic, -1, 1) | |
| assert_raises(ValueError, format.magic, 256, 1) | |
| assert_raises(ValueError, format.magic, 1, -1) | |
| assert_raises(ValueError, format.magic, 1, 256) | |
| def test_large_header(): | |
| s = BytesIO() | |
| d = {'a': 1, 'b': 2} | |
| format.write_array_header_1_0(s, d) | |
| s = BytesIO() | |
| d = {'a': 1, 'b': 2, 'c': 'x'*256*256} | |
| assert_raises(ValueError, format.write_array_header_1_0, s, d) | |
| def test_bad_header(): | |
| # header of length less than 2 should fail | |
| s = BytesIO() | |
| assert_raises(ValueError, format.read_array_header_1_0, s) | |
| s = BytesIO(asbytes('1')) | |
| assert_raises(ValueError, format.read_array_header_1_0, s) | |
| # header shorter than indicated size should fail | |
| s = BytesIO(asbytes('\x01\x00')) | |
| assert_raises(ValueError, format.read_array_header_1_0, s) | |
| # headers without the exact keys required should fail | |
| d = {"shape": (1, 2), | |
| "descr": "x"} | |
| s = BytesIO() | |
| format.write_array_header_1_0(s, d) | |
| assert_raises(ValueError, format.read_array_header_1_0, s) | |
| d = {"shape": (1, 2), | |
| "fortran_order": False, | |
| "descr": "x", | |
| "extrakey": -1} | |
| s = BytesIO() | |
| format.write_array_header_1_0(s, d) | |
| assert_raises(ValueError, format.read_array_header_1_0, s) | |
| def test_large_file_support(): | |
| from nose import SkipTest | |
| if (sys.platform == 'win32' or sys.platform == 'cygwin'): | |
| raise SkipTest("Unknown if Windows has sparse filesystems") | |
| # try creating a large sparse file | |
| tf_name = os.path.join(tempdir, 'sparse_file') | |
| try: | |
| # seek past end would work too, but linux truncate somewhat | |
| # increases the chances that we have a sparse filesystem and can | |
| # avoid actually writing 5GB | |
| import subprocess as sp | |
| sp.check_call(["truncate", "-s", "5368709120", tf_name]) | |
| except: | |
| raise SkipTest("Could not create 5GB large file") | |
| # write a small array to the end | |
| with open(tf_name, "wb") as f: | |
| f.seek(5368709120) | |
| d = np.arange(5) | |
| np.save(f, d) | |
| # read it back | |
| with open(tf_name, "rb") as f: | |
| f.seek(5368709120) | |
| r = np.load(f) | |
| assert_array_equal(r, d) | |
| if __name__ == "__main__": | |
| run_module_suite() | |