Upload train.py with huggingface_hub
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train.py
ADDED
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|
| 1 |
+
import numpy as np
|
| 2 |
+
import pandas as pd
|
| 3 |
+
import torch
|
| 4 |
+
import torch.nn.functional as F
|
| 5 |
+
from torch.optim.lr_scheduler import CosineAnnealingLR, CosineAnnealingWarmRestarts
|
| 6 |
+
import math
|
| 7 |
+
from PIL import Image
|
| 8 |
+
from PIL import ImageFile
|
| 9 |
+
ImageFile.LOAD_TRUNCATED_IMAGES = True
|
| 10 |
+
import os
|
| 11 |
+
from model import Model
|
| 12 |
+
from raffael_model import ConvLSTMAutoencoder
|
| 13 |
+
from raffael_losses import reconstruction_loss as convlstm_reconstruction_loss, temporal_smoothness_loss
|
| 14 |
+
import sys
|
| 15 |
+
|
| 16 |
+
from torch.utils.data import DataLoader
|
| 17 |
+
from dataset_ivf import IVFSequenceDataset
|
| 18 |
+
from tqdm import tqdm
|
| 19 |
+
from datetime import datetime
|
| 20 |
+
torch.backends.cuda.enable_mem_efficient_sdp(False)
|
| 21 |
+
torch.backends.cuda.enable_flash_sdp(False)
|
| 22 |
+
torch.backends.cuda.enable_math_sdp(True)
|
| 23 |
+
batch_size = 50
|
| 24 |
+
os.environ["PYTORCH_CUDA_ALLOC_CONF"] = "expandable_segments:True"
|
| 25 |
+
from huggingface_hub import HfApi
|
| 26 |
+
import wandb
|
| 27 |
+
import gc
|
| 28 |
+
gc.collect()
|
| 29 |
+
import torch.distributed as dist
|
| 30 |
+
from torch.nn.parallel import DistributedDataParallel as DDP
|
| 31 |
+
from torch.utils.data.distributed import DistributedSampler
|
| 32 |
+
import os
|
| 33 |
+
from huggingface_hub import login
|
| 34 |
+
import shutil
|
| 35 |
+
import hashlib
|
| 36 |
+
import json
|
| 37 |
+
class RunningStats:
|
| 38 |
+
def __init__(self):
|
| 39 |
+
self.n = 0
|
| 40 |
+
self.mean = 0.0
|
| 41 |
+
self.m2 = 0.0
|
| 42 |
+
|
| 43 |
+
def push(self, x):
|
| 44 |
+
"""Add a new value and update statistics."""
|
| 45 |
+
self.n += 1
|
| 46 |
+
delta = x - self.mean
|
| 47 |
+
self.mean += delta / self.n
|
| 48 |
+
delta2 = x - self.mean
|
| 49 |
+
self.m2 += delta * delta2
|
| 50 |
+
|
| 51 |
+
@property
|
| 52 |
+
def variance(self):
|
| 53 |
+
"""Returns sample variance (unbiased). Use self.m2 / self.n for population."""
|
| 54 |
+
return self.m2 / (self.n - 1) if self.n > 1 else 0.0
|
| 55 |
+
|
| 56 |
+
@property
|
| 57 |
+
def std_dev(self):
|
| 58 |
+
"""Returns sample standard deviation."""
|
| 59 |
+
return math.sqrt(self.variance)
|
| 60 |
+
|
| 61 |
+
VAL_EMBRYOS = ["CZ594-5","CJ261-10","RL747-8","TM272-9","LFA766-1","GT353-3","LGA881-2-5","LBE649-3","TH481-5","LTA908-2","BS648-7","GS955-7","HA1040-4","CM892-5","FC048-6","GC702-6","DI358-3","MM912-4","RK787-3","GSS052-2","OJ319-5","DML373-2","PS292-4","TM294-2","KT573-4","DJC641-4","FE14-020","LD400-1","MV930-2","MDCH869-4","AS662-2","LH1169-8","GA664-1","PMDPI029-1-3","DV116-3","FV709-11","GM456-3","RA361-4","LM844-1","DL020-3","VM570-4","MC833-6","LV613-2","ZS435-5","RM126-7","BK428-2","LS93-8","GS490-7","GF976-4","PMDPI029-1-11","DRL1048-1","BS294-7","CA658-12","RO793-2","GJ191-1","CC007-2","SL313-11","RC545-2-8","OJ319-9","PA289-8","TK319-10","SM686-7","KJ1077-3","BE645-10","BC167-4","VC581-1","FM162-6","PC758-2","HC459-6","DE069-10","GC340-3","BS596-5","PE256-2","LBE857-1","PH783-3","LS1045-4","CC455-3","DL617-6","BS1086-1","CK601-4","DA309-5","LTE064-1","KF460-4","LP181-1","GS349-4","LC47-8","GS205-6","EH309-8","BS1033-2","LL854-1","DHDPI042-6","BN356-6","PA145-2","GC340-1","MM334-5","AG274-2","BA518-7","BC973-4","BA1195-9","AM33-2","AB91-1","AB028-6","BC167-4","AL884-2","AM685-3"]
|
| 62 |
+
def setup_distributed():
|
| 63 |
+
"""Initialize distributed training"""
|
| 64 |
+
if 'RANK' in os.environ and 'WORLD_SIZE' in os.environ:
|
| 65 |
+
rank = int(os.environ["RANK"])
|
| 66 |
+
world_size = int(os.environ['WORLD_SIZE'])
|
| 67 |
+
local_rank = int(os.environ['LOCAL_RANK'])
|
| 68 |
+
else:
|
| 69 |
+
# Single GPU fallback
|
| 70 |
+
rank = 0
|
| 71 |
+
world_size = 1
|
| 72 |
+
local_rank = 0
|
| 73 |
+
|
| 74 |
+
if world_size > 1:
|
| 75 |
+
dist.init_process_group(backend="nccl")
|
| 76 |
+
torch.cuda.set_device(local_rank)
|
| 77 |
+
|
| 78 |
+
return rank, world_size, local_rank
|
| 79 |
+
def cleanup_distributed():
|
| 80 |
+
if dist.is_initialized():
|
| 81 |
+
dist.destroy_process_group()
|
| 82 |
+
|
| 83 |
+
def generate_repo_name(mode, config_dict, file_paths, date_str):
|
| 84 |
+
"""
|
| 85 |
+
Generate a unique, deterministic repository name based on configuration and code.
|
| 86 |
+
|
| 87 |
+
Args:
|
| 88 |
+
mode: Training mode (e.g., "convlstm", "convlstm_latent_split")
|
| 89 |
+
config_dict: Dictionary of all configuration parameters
|
| 90 |
+
file_paths: List of file paths to hash
|
| 91 |
+
date_str: Date string (YYYY-MM-DD)
|
| 92 |
+
|
| 93 |
+
Returns:
|
| 94 |
+
str: Repository name (max 96 chars)
|
| 95 |
+
"""
|
| 96 |
+
# Create hash input from config
|
| 97 |
+
config_str = json.dumps(config_dict, sort_keys=True)
|
| 98 |
+
|
| 99 |
+
# Hash all file contents
|
| 100 |
+
file_hasher = hashlib.sha256()
|
| 101 |
+
for file_path in file_paths:
|
| 102 |
+
if os.path.exists(file_path):
|
| 103 |
+
with open(file_path, 'rb') as f:
|
| 104 |
+
file_hasher.update(f.read())
|
| 105 |
+
else:
|
| 106 |
+
# If file doesn't exist, add its name to the hash anyway
|
| 107 |
+
file_hasher.update(file_path.encode())
|
| 108 |
+
|
| 109 |
+
# Combine everything into final hash
|
| 110 |
+
combined_hasher = hashlib.sha256()
|
| 111 |
+
combined_hasher.update(config_str.encode())
|
| 112 |
+
combined_hasher.update(file_hasher.digest())
|
| 113 |
+
combined_hasher.update(date_str.encode())
|
| 114 |
+
|
| 115 |
+
# Get short hash (first 8 characters is enough for uniqueness)
|
| 116 |
+
short_hash = combined_hasher.hexdigest()[:8]
|
| 117 |
+
|
| 118 |
+
# Build repo name: embryo-{mode}-{hash}-{date}
|
| 119 |
+
# Example: embryo-convlstm-a3f2b1c9-2025-12-21
|
| 120 |
+
repo_name = f"embryo-{mode}-{short_hash}-{date_str}"
|
| 121 |
+
|
| 122 |
+
# Ensure it's under 96 characters
|
| 123 |
+
if len(repo_name) > 96:
|
| 124 |
+
# Truncate mode if needed
|
| 125 |
+
max_mode_len = 96 - len(f"embryo--{short_hash}-{date_str}")
|
| 126 |
+
truncated_mode = mode[:max_mode_len]
|
| 127 |
+
repo_name = f"embryo-{truncated_mode}-{short_hash}-{date_str}"
|
| 128 |
+
|
| 129 |
+
return repo_name
|
| 130 |
+
|
| 131 |
+
def save_and_push_model(model, repo_name, required_files, model_config=None):
|
| 132 |
+
"""
|
| 133 |
+
Save model and push it along with required training files to HuggingFace Hub
|
| 134 |
+
|
| 135 |
+
Args:
|
| 136 |
+
model: The model to save
|
| 137 |
+
repo_name: Repository name on HuggingFace Hub
|
| 138 |
+
required_files: List of file paths to include in the repo
|
| 139 |
+
model_config: Optional dictionary with model configuration to save as config.json
|
| 140 |
+
"""
|
| 141 |
+
# Create temporary directory for the repo
|
| 142 |
+
os.makedirs(repo_name, exist_ok=True)
|
| 143 |
+
|
| 144 |
+
# Save the model weights
|
| 145 |
+
try:
|
| 146 |
+
model.save_pretrained(repo_name)
|
| 147 |
+
print(f"Saved model using save_pretrained")
|
| 148 |
+
except Exception as e:
|
| 149 |
+
# If save_pretrained fails, just save the state dict
|
| 150 |
+
print(f"save_pretrained failed ({e}), saving state dict only")
|
| 151 |
+
torch.save(model.state_dict(), os.path.join(repo_name, "pytorch_model.bin"))
|
| 152 |
+
|
| 153 |
+
# Save custom config.json with all ablation parameters
|
| 154 |
+
if model_config is not None:
|
| 155 |
+
config_path = os.path.join(repo_name, "config.json")
|
| 156 |
+
with open(config_path, 'w') as f:
|
| 157 |
+
json.dump(model_config, f, indent=2)
|
| 158 |
+
print(f"Saved config.json with ablation parameters")
|
| 159 |
+
|
| 160 |
+
# Copy all required files
|
| 161 |
+
for file_path in required_files:
|
| 162 |
+
if os.path.exists(file_path):
|
| 163 |
+
shutil.copy2(file_path, repo_name)
|
| 164 |
+
print(f"Added {file_path} to repository")
|
| 165 |
+
else:
|
| 166 |
+
print(f"Warning: {file_path} not found, skipping")
|
| 167 |
+
|
| 168 |
+
# Push model to hub (this uploads model weights and config)
|
| 169 |
+
try:
|
| 170 |
+
model.push_to_hub(repo_name)
|
| 171 |
+
print(f"Pushed model weights to {repo_name}")
|
| 172 |
+
except Exception as e:
|
| 173 |
+
print(f"Warning: push_to_hub failed ({e}), will upload manually")
|
| 174 |
+
|
| 175 |
+
# Upload all files using HfApi (including config.json)
|
| 176 |
+
api = HfApi()
|
| 177 |
+
|
| 178 |
+
# Upload config.json first if it exists
|
| 179 |
+
config_file = os.path.join(repo_name, "config.json")
|
| 180 |
+
if os.path.exists(config_file):
|
| 181 |
+
try:
|
| 182 |
+
api.upload_file(
|
| 183 |
+
path_or_fileobj=config_file,
|
| 184 |
+
path_in_repo="config.json",
|
| 185 |
+
repo_id=f"JensLundsgaard/{repo_name}",
|
| 186 |
+
repo_type="model"
|
| 187 |
+
)
|
| 188 |
+
print(f"Uploaded config.json to HuggingFace Hub")
|
| 189 |
+
except Exception as e:
|
| 190 |
+
print(f"Warning: Failed to upload config.json: {e}")
|
| 191 |
+
|
| 192 |
+
|
| 193 |
+
# Upload additional required files
|
| 194 |
+
for file_path in required_files:
|
| 195 |
+
local_file = os.path.join(repo_name, os.path.basename(file_path))
|
| 196 |
+
if os.path.exists(local_file):
|
| 197 |
+
try:
|
| 198 |
+
api.upload_file(
|
| 199 |
+
path_or_fileobj=local_file,
|
| 200 |
+
path_in_repo=os.path.basename(file_path),
|
| 201 |
+
repo_id=f"JensLundsgaard/{repo_name}",
|
| 202 |
+
repo_type="model"
|
| 203 |
+
)
|
| 204 |
+
print(f"Uploaded {file_path} to HuggingFace Hub")
|
| 205 |
+
except Exception as e:
|
| 206 |
+
print(f"Warning: Failed to upload {file_path}: {e}")
|
| 207 |
+
else:
|
| 208 |
+
print(f"Warning: {local_file} not found, skipping upload")
|
| 209 |
+
|
| 210 |
+
print(f"Successfully pushed all files to {repo_name}")
|
| 211 |
+
def gaussian_kernel(size=11, sigma=1.5):
|
| 212 |
+
"""Generate Gaussian kernel for SSIM"""
|
| 213 |
+
coords = torch.arange(size, dtype=torch.float32)
|
| 214 |
+
coords -= size // 2
|
| 215 |
+
g = torch.exp(-(coords ** 2) / (2 * sigma ** 2))
|
| 216 |
+
g /= g.sum()
|
| 217 |
+
return g.unsqueeze(0) * g.unsqueeze(1)
|
| 218 |
+
|
| 219 |
+
|
| 220 |
+
def ssim(img1, img2, kernel_size=11, sigma=1.5, C1=0.01**2, C2=0.03**2):
|
| 221 |
+
"""
|
| 222 |
+
Single-scale SSIM
|
| 223 |
+
Args:
|
| 224 |
+
img1, img2: (B, C, H, W)
|
| 225 |
+
"""
|
| 226 |
+
kernel = gaussian_kernel(kernel_size, sigma).to(img1.device)
|
| 227 |
+
kernel = kernel.unsqueeze(0).unsqueeze(0) # (1, 1, k, k)
|
| 228 |
+
|
| 229 |
+
mu1 = F.conv2d(img1, kernel, padding=kernel_size//2)
|
| 230 |
+
mu2 = F.conv2d(img2, kernel, padding=kernel_size//2)
|
| 231 |
+
|
| 232 |
+
mu1_sq = mu1 ** 2
|
| 233 |
+
mu2_sq = mu2 ** 2
|
| 234 |
+
mu1_mu2 = mu1 * mu2
|
| 235 |
+
|
| 236 |
+
sigma1_sq = F.conv2d(img1 * img1, kernel, padding=kernel_size//2) - mu1_sq
|
| 237 |
+
sigma2_sq = F.conv2d(img2 * img2, kernel, padding=kernel_size//2) - mu2_sq
|
| 238 |
+
sigma12 = F.conv2d(img1 * img2, kernel, padding=kernel_size//2) - mu1_mu2
|
| 239 |
+
|
| 240 |
+
ssim_map = ((2 * mu1_mu2 + C1) * (2 * sigma12 + C2)) / \
|
| 241 |
+
((mu1_sq + mu2_sq + C1) * (sigma1_sq + sigma2_sq + C2))
|
| 242 |
+
|
| 243 |
+
return ssim_map.mean()
|
| 244 |
+
|
| 245 |
+
|
| 246 |
+
def ms_ssim(img1, img2, kernel_size=11, sigma=1.5, weights=None, levels=5):
|
| 247 |
+
if weights is None:
|
| 248 |
+
weights = torch.tensor([0.0448, 0.2856, 0.3001, 0.2363, 0.1333],
|
| 249 |
+
device=img1.device)[:levels]
|
| 250 |
+
|
| 251 |
+
kernel = gaussian_kernel(kernel_size, sigma).to(img1.device)
|
| 252 |
+
kernel = kernel.unsqueeze(0).unsqueeze(0).repeat(img1.shape[1], 1, 1, 1)
|
| 253 |
+
|
| 254 |
+
mcs_list = []
|
| 255 |
+
|
| 256 |
+
for i in range(levels):
|
| 257 |
+
if i == levels - 1:
|
| 258 |
+
ssim_val = ssim(img1, img2, kernel_size, sigma)
|
| 259 |
+
else:
|
| 260 |
+
# Compute CS (contrast-structure) only
|
| 261 |
+
mu1 = F.conv2d(img1, kernel, padding=kernel_size//2, groups=img1.shape[1])
|
| 262 |
+
mu2 = F.conv2d(img2, kernel, padding=kernel_size//2, groups=img1.shape[1])
|
| 263 |
+
|
| 264 |
+
sigma1_sq = F.conv2d(img1**2, kernel, padding=kernel_size//2, groups=img1.shape[1]) - mu1**2
|
| 265 |
+
sigma2_sq = F.conv2d(img2**2, kernel, padding=kernel_size//2, groups=img1.shape[1]) - mu2**2
|
| 266 |
+
sigma12 = F.conv2d(img1*img2, kernel, padding=kernel_size//2, groups=img1.shape[1]) - mu1*mu2
|
| 267 |
+
|
| 268 |
+
C2 = 0.03**2
|
| 269 |
+
cs = (2 * sigma12 + C2) / (sigma1_sq + sigma2_sq + C2)
|
| 270 |
+
mcs_list.append(cs.mean())
|
| 271 |
+
|
| 272 |
+
img1 = F.avg_pool2d(img1, 2)
|
| 273 |
+
img2 = F.avg_pool2d(img2, 2)
|
| 274 |
+
|
| 275 |
+
# Correct combination
|
| 276 |
+
ms_ssim_val = torch.prod(torch.stack([mcs ** w for mcs, w in zip(mcs_list, weights[:-1])]))
|
| 277 |
+
ms_ssim_val *= ssim_val ** weights[-1]
|
| 278 |
+
|
| 279 |
+
return ms_ssim_val
|
| 280 |
+
|
| 281 |
+
def reconstruction_loss(x_rec, x_true, l1_weight=0.5, ms_ssim_weight=0.5):
|
| 282 |
+
"""
|
| 283 |
+
Combined reconstruction loss: L1 + MS-SSIM
|
| 284 |
+
Args:
|
| 285 |
+
x_rec: (B, T, 1, H, W) - reconstructed video
|
| 286 |
+
x_true: (B, T, 1, H, W) - original video
|
| 287 |
+
l1_weight: L1 loss weight
|
| 288 |
+
ms_ssim_weight: MS-SSIM loss weight
|
| 289 |
+
"""
|
| 290 |
+
B, T, C, H, W = x_rec.shape
|
| 291 |
+
|
| 292 |
+
# Flatten temporal dimension for MS-SSIM computation
|
| 293 |
+
x_rec_flat = x_rec.view(B * T, C, H, W) # (B*T, 1, 128, 128)
|
| 294 |
+
x_true_flat = x_true.view(B * T, C, H, W) # (B*T, 1, 128, 128)
|
| 295 |
+
|
| 296 |
+
# L1 Loss
|
| 297 |
+
l1_loss = F.l1_loss(x_rec, x_true)
|
| 298 |
+
|
| 299 |
+
# MS-SSIM Loss
|
| 300 |
+
ms_ssim_val = ms_ssim(x_rec_flat, x_true_flat)
|
| 301 |
+
ms_ssim_loss = 1 - ms_ssim_val
|
| 302 |
+
|
| 303 |
+
# Combined loss
|
| 304 |
+
total_loss = l1_weight * l1_loss + ms_ssim_weight * ms_ssim_loss
|
| 305 |
+
|
| 306 |
+
return total_loss, {
|
| 307 |
+
"l1_loss": l1_loss.item(),
|
| 308 |
+
"ms_ssim_loss": ms_ssim_loss.item(),
|
| 309 |
+
"ms_ssim_value": ms_ssim_val.item()
|
| 310 |
+
}
|
| 311 |
+
|
| 312 |
+
|
| 313 |
+
def train_convlstm(
|
| 314 |
+
loss_type="l1",
|
| 315 |
+
ms_ssim_weight=0.5,
|
| 316 |
+
rec_weight=0.5,
|
| 317 |
+
temporal_weight=0.1,
|
| 318 |
+
dropout_rate=0.1,
|
| 319 |
+
use_convlstm=True,
|
| 320 |
+
use_residual=True,
|
| 321 |
+
use_batchnorm=True,
|
| 322 |
+
model_name="",
|
| 323 |
+
latent_size = 4096
|
| 324 |
+
):
|
| 325 |
+
gc.collect()
|
| 326 |
+
"""Training ConvLSTM Autoencoder with configurable loss (single GPU)
|
| 327 |
+
|
| 328 |
+
Args:
|
| 329 |
+
loss_type: "l1" or "mse" - type of reconstruction loss to use with MS-SSIM
|
| 330 |
+
ms_ssim_weight: float - weight for MS-SSIM loss (0 to disable)
|
| 331 |
+
rec_weight: float - weight for reconstruction loss L1/MSE (0 to disable)
|
| 332 |
+
temporal_weight: float - weight for temporal smoothness loss (0 to disable)
|
| 333 |
+
dropout_rate: float - dropout rate (0 to disable)
|
| 334 |
+
use_convlstm: bool - whether to use ConvLSTM (False = no temporal modeling)
|
| 335 |
+
use_residual: bool - whether to use residual connections
|
| 336 |
+
use_batchnorm: bool - whether to use batch normalization
|
| 337 |
+
"""
|
| 338 |
+
print(torch.cuda.memory_summary(device=None, abbreviated=False))
|
| 339 |
+
torch.cuda.empty_cache()
|
| 340 |
+
torch.autograd.detect_anomaly(True)
|
| 341 |
+
DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 342 |
+
|
| 343 |
+
# Build loss description for logging
|
| 344 |
+
loss_components = []
|
| 345 |
+
if ms_ssim_weight > 0:
|
| 346 |
+
loss_components.append(f"MS-SSIM({ms_ssim_weight})")
|
| 347 |
+
if rec_weight > 0:
|
| 348 |
+
loss_components.append(f"{loss_type.upper()}({rec_weight})")
|
| 349 |
+
if temporal_weight > 0:
|
| 350 |
+
loss_components.append(f"Temporal({temporal_weight})")
|
| 351 |
+
loss_description = " + ".join(loss_components) if loss_components else "None"
|
| 352 |
+
|
| 353 |
+
# Build model description for logging
|
| 354 |
+
model_features = []
|
| 355 |
+
if use_convlstm:
|
| 356 |
+
model_features.append("ConvLSTM")
|
| 357 |
+
if use_residual:
|
| 358 |
+
model_features.append("Residual")
|
| 359 |
+
if use_batchnorm:
|
| 360 |
+
model_features.append("BatchNorm")
|
| 361 |
+
if dropout_rate > 0:
|
| 362 |
+
model_features.append(f"Dropout({dropout_rate})")
|
| 363 |
+
model_description = "+".join(model_features) if model_features else "Baseline"
|
| 364 |
+
date_label = datetime.now().strftime("%Y-%m-%d")
|
| 365 |
+
|
| 366 |
+
wandb.login(key=os.getenv("WANDB_KEY"))
|
| 367 |
+
run = wandb.init(
|
| 368 |
+
entity="jenslundsgaard7-uw-madison",
|
| 369 |
+
project="IVF-Training",
|
| 370 |
+
name=model_name +"-" + date_label,
|
| 371 |
+
config={
|
| 372 |
+
"learning_rate": 0.02,
|
| 373 |
+
"architecture": "ConvLSTM Autoencoder",
|
| 374 |
+
"model_features": model_description,
|
| 375 |
+
"dataset": "https://zenodo.org/records/7912264",
|
| 376 |
+
"epochs": 10,
|
| 377 |
+
"train_split": 0.85,
|
| 378 |
+
"val_split": 0.15,
|
| 379 |
+
"loss": loss_description,
|
| 380 |
+
"loss_type": loss_type,
|
| 381 |
+
"ms_ssim_weight": ms_ssim_weight,
|
| 382 |
+
"rec_weight": rec_weight,
|
| 383 |
+
"temporal_weight": temporal_weight,
|
| 384 |
+
"dropout_rate": dropout_rate,
|
| 385 |
+
"use_convlstm": use_convlstm,
|
| 386 |
+
"use_residual": use_residual,
|
| 387 |
+
"use_batchnorm": use_batchnorm,
|
| 388 |
+
"latent_size": latent_size,
|
| 389 |
+
"seq_len": 50,
|
| 390 |
+
"image_size": 128,
|
| 391 |
+
"distributed": False,
|
| 392 |
+
},
|
| 393 |
+
)
|
| 394 |
+
|
| 395 |
+
login(os.getenv("HF_KEY"))
|
| 396 |
+
print(torch.cuda.memory_summary(device=None, abbreviated=False))
|
| 397 |
+
print(DEVICE)
|
| 398 |
+
print(f"\n{'='*60}")
|
| 399 |
+
print(f"ABLATION STUDY - Training Configuration")
|
| 400 |
+
print(f"{'='*60}")
|
| 401 |
+
print(f"\nLoss Configuration:")
|
| 402 |
+
print(f" Base Loss Type: {loss_type.upper()}")
|
| 403 |
+
print(f" MS-SSIM Weight: {ms_ssim_weight} {'(DISABLED)' if ms_ssim_weight == 0 else ''}")
|
| 404 |
+
print(f" Reconstruction Weight: {rec_weight} {'(DISABLED)' if rec_weight == 0 else ''}")
|
| 405 |
+
print(f" Temporal Smoothness Weight: {temporal_weight} {'(DISABLED)' if temporal_weight == 0 else ''}")
|
| 406 |
+
print(f" Combined Loss: {loss_description}")
|
| 407 |
+
print(f"\nModel Architecture Configuration:")
|
| 408 |
+
print(f" ConvLSTM: {'ENABLED' if use_convlstm else 'DISABLED'}")
|
| 409 |
+
print(f" Residual Connections: {'ENABLED' if use_residual else 'DISABLED'}")
|
| 410 |
+
print(f" Batch Normalization: {'ENABLED' if use_batchnorm else 'DISABLED'}")
|
| 411 |
+
print(f" Dropout Rate: {dropout_rate} {'(DISABLED)' if dropout_rate == 0 else ''}")
|
| 412 |
+
print(f" Model Features: {model_description}")
|
| 413 |
+
print(f"{'='*60}\n")
|
| 414 |
+
|
| 415 |
+
# Save detailed training configuration
|
| 416 |
+
config_content = f"""ConvLSTM Autoencoder Training Configuration (ABLATION)
|
| 417 |
+
================================================================================
|
| 418 |
+
Date: {datetime.now().strftime("%Y-%m-%d %H:%M:%S")}
|
| 419 |
+
|
| 420 |
+
ABLATION STUDY CONFIGURATION
|
| 421 |
+
================================================================================
|
| 422 |
+
|
| 423 |
+
"""
|
| 424 |
+
|
| 425 |
+
with open("training_config_detailed.txt", "w") as f:
|
| 426 |
+
f.write(config_content)
|
| 427 |
+
|
| 428 |
+
print("Configuration saved to training_config_detailed.txt")
|
| 429 |
+
|
| 430 |
+
model = ConvLSTMAutoencoder(
|
| 431 |
+
None,
|
| 432 |
+
seq_len=50,
|
| 433 |
+
input_channels=1,
|
| 434 |
+
encoder_hidden_dim=256,
|
| 435 |
+
encoder_layers=2,
|
| 436 |
+
decoder_hidden_dim=128,
|
| 437 |
+
decoder_layers=2,
|
| 438 |
+
latent_size=latent_size,
|
| 439 |
+
use_classifier=False,
|
| 440 |
+
num_classes=2,
|
| 441 |
+
use_latent_split=False,
|
| 442 |
+
# Ablation parameters
|
| 443 |
+
dropout_rate=dropout_rate,
|
| 444 |
+
use_convlstm=use_convlstm,
|
| 445 |
+
use_residual=use_residual,
|
| 446 |
+
use_batchnorm=use_batchnorm
|
| 447 |
+
)
|
| 448 |
+
|
| 449 |
+
model = model.to(DEVICE)
|
| 450 |
+
|
| 451 |
+
learning_rate = 2e-4
|
| 452 |
+
optimizer = torch.optim.Adam(model.parameters(), lr=learning_rate, weight_decay=1e-5)
|
| 453 |
+
|
| 454 |
+
df = pd.read_csv(os.path.abspath("index.csv"))
|
| 455 |
+
mask = df["cell_id"].str.contains("|".join(VAL_EMBRYOS), regex=True)
|
| 456 |
+
val_df = df[mask]
|
| 457 |
+
train_df = df[~mask]
|
| 458 |
+
train_dataset = IVFSequenceDataset(train_df, resize=128, norm="minmax01")
|
| 459 |
+
val_dataset = IVFSequenceDataset(val_df, resize=128, norm="minmax01")
|
| 460 |
+
print("val size: ", str(len(val_df) / len(df)))
|
| 461 |
+
|
| 462 |
+
#generator = torch.Generator().manual_seed(42)
|
| 463 |
+
#train_dataset, val_dataset = torch.utils.data.random_split(ds, [train_size, val_size], generator=generator)
|
| 464 |
+
|
| 465 |
+
# Create DataLoaders
|
| 466 |
+
loader = DataLoader(
|
| 467 |
+
train_dataset,
|
| 468 |
+
batch_size=10,
|
| 469 |
+
shuffle=True,
|
| 470 |
+
num_workers=4,
|
| 471 |
+
pin_memory=True,
|
| 472 |
+
drop_last=True
|
| 473 |
+
)
|
| 474 |
+
val_loader = DataLoader(
|
| 475 |
+
val_dataset,
|
| 476 |
+
batch_size=1,
|
| 477 |
+
shuffle=False, # No shuffle for validation
|
| 478 |
+
num_workers=4,
|
| 479 |
+
pin_memory=True,
|
| 480 |
+
drop_last=False # Don't drop last for validation
|
| 481 |
+
)
|
| 482 |
+
scheduler = torch.optim.lr_scheduler.CosineAnnealingLR(optimizer, len(loader) * 10)
|
| 483 |
+
|
| 484 |
+
for epoch in range(10):
|
| 485 |
+
model.train()
|
| 486 |
+
pbar = tqdm(loader, desc=f"epoch {epoch}")
|
| 487 |
+
total = 0.0
|
| 488 |
+
count = 0
|
| 489 |
+
|
| 490 |
+
for index, (embryo_vol, _, _) in enumerate(pbar):
|
| 491 |
+
optimizer.zero_grad()
|
| 492 |
+
|
| 493 |
+
embryo_vol = embryo_vol.to(DEVICE) # (1, T, 1, 500, 500)
|
| 494 |
+
|
| 495 |
+
# Forward pass - returns (reconstruction, latent_seq)
|
| 496 |
+
embryo_recon, embryo_lat = model(embryo_vol)
|
| 497 |
+
if(index % 47 == 0):
|
| 498 |
+
vol_img = embryo_vol[0, -1, 0].cpu().detach().numpy()
|
| 499 |
+
recon_img = embryo_recon[0, -1, 0].cpu().detach().numpy()
|
| 500 |
+
|
| 501 |
+
vol_img = (vol_img * 255).astype(np.uint8)
|
| 502 |
+
recon_img = (recon_img * 255).astype(np.uint8)
|
| 503 |
+
comparison = np.concatenate((vol_img, recon_img), axis=1)
|
| 504 |
+
|
| 505 |
+
images = wandb.Image(comparison, caption="Embryo vs Recon comparison")
|
| 506 |
+
run.log({"reconstruction": images})
|
| 507 |
+
|
| 508 |
+
# Reconstruction loss using MS-SSIM + L1 or MSE (with configurable weights)
|
| 509 |
+
if loss_type == "l1":
|
| 510 |
+
rec_loss, rec_metrics = convlstm_reconstruction_loss(
|
| 511 |
+
embryo_recon, embryo_vol, l1_weight=rec_weight, ms_ssim_weight=ms_ssim_weight
|
| 512 |
+
)
|
| 513 |
+
elif loss_type == "mse":
|
| 514 |
+
# MS-SSIM + MSE loss
|
| 515 |
+
B, T, C, H, W = embryo_recon.shape
|
| 516 |
+
x_rec_flat = embryo_recon.view(B * T, C, H, W)
|
| 517 |
+
x_true_flat = embryo_vol.view(B * T, C, H, W)
|
| 518 |
+
|
| 519 |
+
mse_loss = F.mse_loss(embryo_recon, embryo_vol)
|
| 520 |
+
ms_ssim_val = ms_ssim(x_rec_flat, x_true_flat)
|
| 521 |
+
ms_ssim_loss = 1 - ms_ssim_val
|
| 522 |
+
|
| 523 |
+
rec_loss = rec_weight * mse_loss + ms_ssim_weight * ms_ssim_loss
|
| 524 |
+
rec_metrics = {
|
| 525 |
+
"mse_loss": mse_loss.item(),
|
| 526 |
+
"ms_ssim_loss": ms_ssim_loss.item(),
|
| 527 |
+
"ms_ssim_value": ms_ssim_val.item()
|
| 528 |
+
}
|
| 529 |
+
else:
|
| 530 |
+
raise ValueError(f"Invalid loss_type: {loss_type}. Must be 'l1' or 'mse'")
|
| 531 |
+
|
| 532 |
+
# Temporal smoothness loss (with configurable weight)
|
| 533 |
+
# embryo_lat is (1, T, 4096) - encourages smooth transitions between frames
|
| 534 |
+
if temporal_weight > 0:
|
| 535 |
+
smooth_loss = temporal_smoothness_loss(embryo_lat, weight=temporal_weight)
|
| 536 |
+
loss = rec_loss + smooth_loss
|
| 537 |
+
else:
|
| 538 |
+
smooth_loss = torch.tensor(0.0, device=DEVICE)
|
| 539 |
+
loss = rec_loss
|
| 540 |
+
|
| 541 |
+
if torch.isnan(loss) or torch.isinf(loss):
|
| 542 |
+
print(f"NaN/Inf detected, skipping batch")
|
| 543 |
+
continue
|
| 544 |
+
|
| 545 |
+
loss.backward()
|
| 546 |
+
total_norm = 0
|
| 547 |
+
for p in model.parameters():
|
| 548 |
+
if p.grad is not None:
|
| 549 |
+
param_norm = p.grad.data.norm(2)
|
| 550 |
+
total_norm += param_norm.item() ** 2
|
| 551 |
+
total_norm = total_norm ** 0.5
|
| 552 |
+
|
| 553 |
+
if total_norm > 100:
|
| 554 |
+
print(f"Warning: Large gradient norm: {total_norm:.2f}")
|
| 555 |
+
|
| 556 |
+
torch.nn.utils.clip_grad_norm_(model.parameters(), 5)
|
| 557 |
+
scheduler.step()
|
| 558 |
+
optimizer.step()
|
| 559 |
+
total += loss.item()
|
| 560 |
+
count += 1
|
| 561 |
+
|
| 562 |
+
if (index % 50 == 0) and run is not None:
|
| 563 |
+
log_dict = {
|
| 564 |
+
"step": epoch * len(loader) + index,
|
| 565 |
+
"loss": loss.item(),
|
| 566 |
+
"rec_loss": rec_loss.item(),
|
| 567 |
+
"smooth_loss": smooth_loss.item(),
|
| 568 |
+
"ms_ssim": rec_metrics["ms_ssim_value"],
|
| 569 |
+
"lr": scheduler.get_last_lr()[0]
|
| 570 |
+
}
|
| 571 |
+
|
| 572 |
+
# Add loss-specific metrics
|
| 573 |
+
if loss_type == "l1":
|
| 574 |
+
log_dict["l1_loss"] = rec_metrics["l1_loss"]
|
| 575 |
+
elif loss_type == "mse":
|
| 576 |
+
log_dict["mse_loss"] = rec_metrics["mse_loss"]
|
| 577 |
+
|
| 578 |
+
run.log(log_dict)
|
| 579 |
+
|
| 580 |
+
pbar.set_postfix(
|
| 581 |
+
loss=f"{loss.item():.4f}",
|
| 582 |
+
rec=f"{rec_loss.item():.4f}",
|
| 583 |
+
smooth=f"{smooth_loss.item():.4f}"
|
| 584 |
+
)
|
| 585 |
+
|
| 586 |
+
|
| 587 |
+
|
| 588 |
+
avg_loss = total/max(1, count)
|
| 589 |
+
run.log({"avg_loss": avg_loss})
|
| 590 |
+
print(f"epoch {epoch} avg loss={avg_loss:.4f}")
|
| 591 |
+
|
| 592 |
+
# Save the state dict
|
| 593 |
+
torch.save(model.state_dict(), "convlstm_model_weights.pth")
|
| 594 |
+
|
| 595 |
+
# Generate unique repo name based on config and code
|
| 596 |
+
date_label = datetime.now().strftime("%Y-%m-%d")
|
| 597 |
+
|
| 598 |
+
# Collect all config for hashing
|
| 599 |
+
config_for_hash = {
|
| 600 |
+
"mode": "convlstm",
|
| 601 |
+
"loss_type": loss_type,
|
| 602 |
+
"ms_ssim_weight": ms_ssim_weight,
|
| 603 |
+
"rec_weight": rec_weight,
|
| 604 |
+
"temporal_weight": temporal_weight,
|
| 605 |
+
"dropout_rate": dropout_rate,
|
| 606 |
+
"use_convlstm": use_convlstm,
|
| 607 |
+
"use_residual": use_residual,
|
| 608 |
+
"use_batchnorm": use_batchnorm,
|
| 609 |
+
"learning_rate": 2e-4,
|
| 610 |
+
"encoder_hidden_dim": 256,
|
| 611 |
+
"encoder_layers": 2,
|
| 612 |
+
"decoder_hidden_dim": 128,
|
| 613 |
+
"decoder_layers": 2,
|
| 614 |
+
"latent_size": latent_size,
|
| 615 |
+
"seq_len": 50,
|
| 616 |
+
"image_size": 128,
|
| 617 |
+
}
|
| 618 |
+
|
| 619 |
+
# Required files for ConvLSTM model
|
| 620 |
+
required_files = [
|
| 621 |
+
"train.py",
|
| 622 |
+
"raffael_model.py",
|
| 623 |
+
"raffael_losses.py",
|
| 624 |
+
"raffael_conv_lstm.py",
|
| 625 |
+
"dataset_ivf.py",
|
| 626 |
+
"train_model.sh",
|
| 627 |
+
"training_config.txt",
|
| 628 |
+
"training_config_detailed.txt",
|
| 629 |
+
]
|
| 630 |
+
|
| 631 |
+
# Generate unique repo name
|
| 632 |
+
repo_name = generate_repo_name("convlstm", config_for_hash, required_files, date_label)
|
| 633 |
+
|
| 634 |
+
# Create comprehensive config for HuggingFace
|
| 635 |
+
hf_config = {
|
| 636 |
+
"model_type": "ConvLSTMAutoencoder",
|
| 637 |
+
"architecture": "ConvLSTM Autoencoder",
|
| 638 |
+
# Model architecture parameters
|
| 639 |
+
"seq_len": 50,
|
| 640 |
+
"input_channels": 1,
|
| 641 |
+
"encoder_hidden_dim": 256,
|
| 642 |
+
"encoder_layers": 2,
|
| 643 |
+
"decoder_hidden_dim": 128,
|
| 644 |
+
"decoder_layers": 2,
|
| 645 |
+
"latent_size": latent_size,
|
| 646 |
+
"use_classifier": False,
|
| 647 |
+
"num_classes": 2,
|
| 648 |
+
"use_latent_split": False,
|
| 649 |
+
"image_size": 128,
|
| 650 |
+
# Ablation parameters
|
| 651 |
+
"dropout_rate": dropout_rate,
|
| 652 |
+
"use_convlstm": use_convlstm,
|
| 653 |
+
"use_residual": use_residual,
|
| 654 |
+
"use_batchnorm": use_batchnorm,
|
| 655 |
+
# Loss configuration
|
| 656 |
+
"loss_type": loss_type,
|
| 657 |
+
"ms_ssim_weight": ms_ssim_weight,
|
| 658 |
+
"rec_weight": rec_weight,
|
| 659 |
+
"temporal_weight": temporal_weight,
|
| 660 |
+
"loss_description": loss_description,
|
| 661 |
+
# Training configuration
|
| 662 |
+
"learning_rate": 2e-4,
|
| 663 |
+
"weight_decay": 1e-5,
|
| 664 |
+
"optimizer": "Adam",
|
| 665 |
+
"scheduler": "CosineAnnealingLR",
|
| 666 |
+
"batch_size": 1,
|
| 667 |
+
"epochs": 10,
|
| 668 |
+
"gradient_clip": 5.0,
|
| 669 |
+
# Dataset
|
| 670 |
+
"dataset": "https://zenodo.org/records/7912264",
|
| 671 |
+
"resize": 128,
|
| 672 |
+
"normalization": "minmax01",
|
| 673 |
+
# Reproducibility
|
| 674 |
+
"repo_name": repo_name,
|
| 675 |
+
"date": date_label,
|
| 676 |
+
"hash": repo_name.split("-")[-2] if "-" in repo_name else "",
|
| 677 |
+
}
|
| 678 |
+
|
| 679 |
+
save_and_push_model(model, model_name +"-"+ date_label, required_files, model_config=hf_config)
|
| 680 |
+
val_metrics = {
|
| 681 |
+
'mse': RunningStats(),
|
| 682 |
+
'l1': RunningStats(),
|
| 683 |
+
'ssim': RunningStats(),
|
| 684 |
+
'temp': RunningStats()
|
| 685 |
+
}
|
| 686 |
+
model.eval() # Set model to evaluation mode
|
| 687 |
+
with torch.no_grad():
|
| 688 |
+
for embryo_vol, _, _ in val_loader:
|
| 689 |
+
embryo_vol = embryo_vol.to(DEVICE) # (1, T, 1, H, W)
|
| 690 |
+
val_recon, val_lat = model(embryo_vol)
|
| 691 |
+
B, T, C, H, W = embryo_vol.shape
|
| 692 |
+
|
| 693 |
+
# MSE
|
| 694 |
+
val_metrics['mse'].push(F.mse_loss(val_recon, embryo_vol).item())
|
| 695 |
+
|
| 696 |
+
# L1
|
| 697 |
+
val_metrics['l1'].push(F.l1_loss(val_recon, embryo_vol).item())
|
| 698 |
+
|
| 699 |
+
# MS-SSIM
|
| 700 |
+
val_recon_flat = val_recon.view(B * T, C, H, W)
|
| 701 |
+
embryo_vol_flat = embryo_vol.view(B * T, C, H, W)
|
| 702 |
+
ms_ssim_val = ms_ssim(val_recon_flat, embryo_vol_flat)
|
| 703 |
+
val_metrics['ssim'].push((1 - ms_ssim_val).item())
|
| 704 |
+
|
| 705 |
+
# Temporal smoothness of latents
|
| 706 |
+
# val_lat is (B, T, latent_size)
|
| 707 |
+
if T > 1:
|
| 708 |
+
lat_diff = torch.diff(val_lat, dim=1) # (B, T-1, latent_size)
|
| 709 |
+
temporal_smooth = lat_diff.norm(dim=-1).mean() # Average L2 norm of differences
|
| 710 |
+
# Log to wandb with val_ prefix
|
| 711 |
+
val_log_dict = {
|
| 712 |
+
f"val_{key}": value.mean for key, value in val_metrics.items()
|
| 713 |
+
}
|
| 714 |
+
val_log_std_dict = {
|
| 715 |
+
f"val_{key}_std": value.std_dev for key, value in val_metrics.items()
|
| 716 |
+
}
|
| 717 |
+
|
| 718 |
+
run.log(val_log_dict)
|
| 719 |
+
run.log(val_log_std_dict)
|
| 720 |
+
|
| 721 |
+
|
| 722 |
+
run.finish()
|
| 723 |
+
gc.collect()
|
| 724 |
+
torch.cuda.empty_cache()
|
| 725 |
+
|
| 726 |
+
|
| 727 |
+
def train_convlstm_latent_split(
|
| 728 |
+
loss_type="l1",
|
| 729 |
+
ms_ssim_weight=0.5,
|
| 730 |
+
rec_weight=0.5,
|
| 731 |
+
temporal_weight=0.1,
|
| 732 |
+
dropout_rate=0.1,
|
| 733 |
+
use_convlstm=True,
|
| 734 |
+
use_residual=True,
|
| 735 |
+
use_batchnorm=True,
|
| 736 |
+
model_name ="",
|
| 737 |
+
latent_size = 4096
|
| 738 |
+
):
|
| 739 |
+
gc.collect()
|
| 740 |
+
"""Training ConvLSTM Autoencoder with LATENT SPLIT enabled (single GPU)
|
| 741 |
+
|
| 742 |
+
Args:
|
| 743 |
+
loss_type: "l1" or "mse" - type of reconstruction loss to use with MS-SSIM
|
| 744 |
+
ms_ssim_weight: float - weight for MS-SSIM loss (0 to disable)
|
| 745 |
+
rec_weight: float - weight for reconstruction loss L1/MSE (0 to disable)
|
| 746 |
+
temporal_weight: float - weight for temporal smoothness loss (0 to disable)
|
| 747 |
+
dropout_rate: float - dropout rate (0 to disable)
|
| 748 |
+
use_convlstm: bool - whether to use ConvLSTM (False = no temporal modeling)
|
| 749 |
+
use_residual: bool - whether to use residual connections
|
| 750 |
+
use_batchnorm: bool - whether to use batch normalization
|
| 751 |
+
"""
|
| 752 |
+
print(torch.cuda.memory_summary(device=None, abbreviated=False))
|
| 753 |
+
torch.cuda.empty_cache()
|
| 754 |
+
torch.autograd.detect_anomaly(True)
|
| 755 |
+
DEVICE = torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 756 |
+
|
| 757 |
+
# Build loss description for logging
|
| 758 |
+
loss_components = []
|
| 759 |
+
if ms_ssim_weight > 0:
|
| 760 |
+
loss_components.append(f"MS-SSIM({ms_ssim_weight})")
|
| 761 |
+
if rec_weight > 0:
|
| 762 |
+
loss_components.append(f"{loss_type.upper()}({rec_weight})")
|
| 763 |
+
if temporal_weight > 0:
|
| 764 |
+
loss_components.append(f"Temporal({temporal_weight})")
|
| 765 |
+
loss_description = " + ".join(loss_components) if loss_components else "None"
|
| 766 |
+
|
| 767 |
+
# Build model description for logging
|
| 768 |
+
model_features = []
|
| 769 |
+
if use_convlstm:
|
| 770 |
+
model_features.append("ConvLSTM")
|
| 771 |
+
if use_residual:
|
| 772 |
+
model_features.append("Residual")
|
| 773 |
+
if use_batchnorm:
|
| 774 |
+
model_features.append("BatchNorm")
|
| 775 |
+
if dropout_rate > 0:
|
| 776 |
+
model_features.append(f"Dropout({dropout_rate})")
|
| 777 |
+
model_description = "+".join(model_features) if model_features else "Baseline"
|
| 778 |
+
date_label = datetime.now().strftime("%Y-%m-%d")
|
| 779 |
+
|
| 780 |
+
wandb.login(key=os.getenv("WANDB_KEY"))
|
| 781 |
+
run = wandb.init(
|
| 782 |
+
entity="jenslundsgaard7-uw-madison",
|
| 783 |
+
project="IVF-Training",
|
| 784 |
+
name=model_name + "-" + date_label,
|
| 785 |
+
config={
|
| 786 |
+
"learning_rate": 0.02,
|
| 787 |
+
"architecture": "ConvLSTM Autoencoder with Latent Split",
|
| 788 |
+
"model_features": model_description,
|
| 789 |
+
"dataset": "https://zenodo.org/records/7912264",
|
| 790 |
+
"epochs": 10,
|
| 791 |
+
"train_split": 0.85,
|
| 792 |
+
"val_split": 0.15,
|
| 793 |
+
"loss": loss_description,
|
| 794 |
+
"loss_type": loss_type,
|
| 795 |
+
"ms_ssim_weight": ms_ssim_weight,
|
| 796 |
+
"rec_weight": rec_weight,
|
| 797 |
+
"temporal_weight": temporal_weight,
|
| 798 |
+
"dropout_rate": dropout_rate,
|
| 799 |
+
"use_convlstm": use_convlstm,
|
| 800 |
+
"use_residual": use_residual,
|
| 801 |
+
"use_batchnorm": use_batchnorm,
|
| 802 |
+
"latent_size": latent_size,
|
| 803 |
+
"latent_split": True,
|
| 804 |
+
"embryo_latent_size": latent_size//2,
|
| 805 |
+
"empty_latent_size": latent_size//2,
|
| 806 |
+
"seq_len": 50,
|
| 807 |
+
"image_size": 128,
|
| 808 |
+
"distributed": False,
|
| 809 |
+
},
|
| 810 |
+
)
|
| 811 |
+
|
| 812 |
+
login(os.getenv("HF_KEY"))
|
| 813 |
+
print(torch.cuda.memory_summary(device=None, abbreviated=False))
|
| 814 |
+
print(DEVICE)
|
| 815 |
+
print(f"\n{'='*60}")
|
| 816 |
+
print(f"ABLATION STUDY - Training Configuration")
|
| 817 |
+
print(f"{'='*60}")
|
| 818 |
+
print(f"\nLoss Configuration:")
|
| 819 |
+
print(f" Base Loss Type: {loss_type.upper()}")
|
| 820 |
+
print(f" MS-SSIM Weight: {ms_ssim_weight} {'(DISABLED)' if ms_ssim_weight == 0 else ''}")
|
| 821 |
+
print(f" Reconstruction Weight: {rec_weight} {'(DISABLED)' if rec_weight == 0 else ''}")
|
| 822 |
+
print(f" Temporal Smoothness Weight: {temporal_weight} {'(DISABLED)' if temporal_weight == 0 else ''}")
|
| 823 |
+
print(f" Combined Loss: {loss_description}")
|
| 824 |
+
print(f"\nModel Architecture Configuration:")
|
| 825 |
+
print(f" ConvLSTM: {'ENABLED' if use_convlstm else 'DISABLED'}")
|
| 826 |
+
print(f" Residual Connections: {'ENABLED' if use_residual else 'DISABLED'}")
|
| 827 |
+
print(f" Batch Normalization: {'ENABLED' if use_batchnorm else 'DISABLED'}")
|
| 828 |
+
print(f" Dropout Rate: {dropout_rate} {'(DISABLED)' if dropout_rate == 0 else ''}")
|
| 829 |
+
print(f" Model Features: {model_description}")
|
| 830 |
+
print(f"\nLatent Configuration:")
|
| 831 |
+
print(f" Latent Split: ENABLED (2048 for empty, 2048 for embryo)")
|
| 832 |
+
print(f"{'='*60}\n")
|
| 833 |
+
|
| 834 |
+
# Save detailed training configuration
|
| 835 |
+
config_content = f"""ConvLSTM Autoencoder Training Configuration (LATENT SPLIT + ABLATION)
|
| 836 |
+
================================================================================
|
| 837 |
+
Date: {datetime.now().strftime("%Y-%m-%d %H:%M:%S")}
|
| 838 |
+
|
| 839 |
+
ABLATION STUDY CONFIGURATION
|
| 840 |
+
================================================================================
|
| 841 |
+
|
| 842 |
+
"""
|
| 843 |
+
|
| 844 |
+
with open("training_config_latent_split.txt", "w") as f:
|
| 845 |
+
f.write(config_content)
|
| 846 |
+
|
| 847 |
+
print("Configuration saved to training_config_latent_split.txt")
|
| 848 |
+
|
| 849 |
+
# Create model with LATENT SPLIT and ABLATION parameters
|
| 850 |
+
"""model = ConvLSTMAutoencoder(
|
| 851 |
+
None,
|
| 852 |
+
seq_len=50,
|
| 853 |
+
input_channels=1,
|
| 854 |
+
encoder_hidden_dim=256,
|
| 855 |
+
encoder_layers=2,
|
| 856 |
+
decoder_hidden_dim=128,
|
| 857 |
+
decoder_layers=2,
|
| 858 |
+
latent_size=latent_size,
|
| 859 |
+
use_classifier=False,
|
| 860 |
+
num_classes=2,
|
| 861 |
+
use_latent_split=True, # ENABLE LATENT SPLIT
|
| 862 |
+
# Ablation parameters
|
| 863 |
+
dropout_rate=dropout_rate,
|
| 864 |
+
use_convlstm=use_convlstm,
|
| 865 |
+
use_residual=use_residual,
|
| 866 |
+
use_batchnorm=use_batchnorm
|
| 867 |
+
"""
|
| 868 |
+
model = ConvLSTMAutoencoder(
|
| 869 |
+
seq_len=50,
|
| 870 |
+
input_channels=1,
|
| 871 |
+
encoder_hidden_dim=256,
|
| 872 |
+
encoder_layers=2,
|
| 873 |
+
decoder_hidden_dim=128,
|
| 874 |
+
decoder_layers=2,
|
| 875 |
+
latent_size=4096,
|
| 876 |
+
use_classifier=True,
|
| 877 |
+
num_classes=2
|
| 878 |
+
)
|
| 879 |
+
model = model.to(DEVICE)
|
| 880 |
+
|
| 881 |
+
learning_rate = 2e-4
|
| 882 |
+
optimizer = torch.optim.Adam(model.parameters(), lr=learning_rate, weight_decay=1e-5)
|
| 883 |
+
|
| 884 |
+
df = pd.read_csv(os.path.abspath("index.csv"))
|
| 885 |
+
mask = df["cell_id"].str.contains("|".join(VAL_EMBRYOS), regex=True)
|
| 886 |
+
val_df = df[mask]
|
| 887 |
+
train_df = df[~mask]
|
| 888 |
+
train_dataset = IVFSequenceDataset(train_df, resize=128, norm="minmax01")
|
| 889 |
+
val_dataset = IVFSequenceDataset(val_df, resize=128, norm="minmax01")
|
| 890 |
+
print("val size: ", str(len(val_df) / len(df)))
|
| 891 |
+
|
| 892 |
+
#generator = torch.Generator().manual_seed(42)
|
| 893 |
+
#train_dataset, val_dataset = torch.utils.data.random_split(ds, [train_size, val_size], generator=generator)
|
| 894 |
+
|
| 895 |
+
# Create DataLoaders
|
| 896 |
+
loader = DataLoader(
|
| 897 |
+
train_dataset,
|
| 898 |
+
batch_size=1,
|
| 899 |
+
shuffle=True,
|
| 900 |
+
num_workers=4,
|
| 901 |
+
pin_memory=True,
|
| 902 |
+
drop_last=True
|
| 903 |
+
)
|
| 904 |
+
val_loader = DataLoader(
|
| 905 |
+
val_dataset,
|
| 906 |
+
batch_size=1,
|
| 907 |
+
shuffle=False, # No shuffle for validation
|
| 908 |
+
num_workers=4,
|
| 909 |
+
pin_memory=True,
|
| 910 |
+
drop_last=False # Don't drop last for validation
|
| 911 |
+
)
|
| 912 |
+
|
| 913 |
+
scheduler = torch.optim.lr_scheduler.CosineAnnealingLR(optimizer, len(loader) * 10)
|
| 914 |
+
|
| 915 |
+
for epoch in range(10):
|
| 916 |
+
model.train()
|
| 917 |
+
pbar = tqdm(loader, desc=f"epoch {epoch}")
|
| 918 |
+
total = 0.0
|
| 919 |
+
count = 0
|
| 920 |
+
|
| 921 |
+
for index, (embryo_vol, empty_well_vol, _) in enumerate(pbar):
|
| 922 |
+
optimizer.zero_grad()
|
| 923 |
+
|
| 924 |
+
# embryo_vol and empty_well_vol are (1, T, 1, H, W)
|
| 925 |
+
embryo_vol = embryo_vol.to(DEVICE)
|
| 926 |
+
empty_well_vol = empty_well_vol.to(DEVICE)
|
| 927 |
+
|
| 928 |
+
# Forward pass for embryo (uses second half of latent: 2048:4096)
|
| 929 |
+
embryo_recon, embryo_lat = model(embryo_vol, empty_well=False)
|
| 930 |
+
|
| 931 |
+
# Forward pass for empty well (uses first half of latent: 0:2048)
|
| 932 |
+
empty_recon, empty_lat = model(empty_well_vol, empty_well=True)
|
| 933 |
+
if(index % 47 == 0):
|
| 934 |
+
vol_img = embryo_vol[0, -1, 0].cpu().detach().numpy()
|
| 935 |
+
recon_img = embryo_recon[0, -1, 0].cpu().detach().numpy()
|
| 936 |
+
|
| 937 |
+
vol_img = (vol_img * 255).astype(np.uint8)
|
| 938 |
+
recon_img = (recon_img * 255).astype(np.uint8)
|
| 939 |
+
comparison = np.concatenate((vol_img, recon_img), axis=1)
|
| 940 |
+
|
| 941 |
+
images = wandb.Image(comparison, caption="Embryo vs Recon comparison")
|
| 942 |
+
run.log({"reconstruction": images})
|
| 943 |
+
# Reconstruction loss for embryo (with configurable weights)
|
| 944 |
+
if loss_type == "l1":
|
| 945 |
+
rec_loss_embryo, rec_metrics_embryo = convlstm_reconstruction_loss(
|
| 946 |
+
embryo_recon, embryo_vol, l1_weight=rec_weight, ms_ssim_weight=ms_ssim_weight
|
| 947 |
+
)
|
| 948 |
+
elif loss_type == "mse":
|
| 949 |
+
B, T, C, H, W = embryo_recon.shape
|
| 950 |
+
x_rec_flat = embryo_recon.view(B * T, C, H, W)
|
| 951 |
+
x_true_flat = embryo_vol.view(B * T, C, H, W)
|
| 952 |
+
|
| 953 |
+
mse_loss = F.mse_loss(embryo_recon, embryo_vol)
|
| 954 |
+
ms_ssim_val = ms_ssim(x_rec_flat, x_true_flat)
|
| 955 |
+
ms_ssim_loss = 1 - ms_ssim_val
|
| 956 |
+
|
| 957 |
+
rec_loss_embryo = rec_weight * mse_loss + ms_ssim_weight * ms_ssim_loss
|
| 958 |
+
rec_metrics_embryo = {
|
| 959 |
+
"mse_loss": mse_loss.item(),
|
| 960 |
+
"ms_ssim_loss": ms_ssim_loss.item(),
|
| 961 |
+
"ms_ssim_value": ms_ssim_val.item()
|
| 962 |
+
}
|
| 963 |
+
else:
|
| 964 |
+
raise ValueError(f"Invalid loss_type: {loss_type}. Must be 'l1' or 'mse'")
|
| 965 |
+
|
| 966 |
+
# Reconstruction loss for empty well (with configurable weights)
|
| 967 |
+
if loss_type == "l1":
|
| 968 |
+
rec_loss_empty, rec_metrics_empty = convlstm_reconstruction_loss(
|
| 969 |
+
empty_recon, empty_well_vol, l1_weight=rec_weight, ms_ssim_weight=ms_ssim_weight
|
| 970 |
+
)
|
| 971 |
+
elif loss_type == "mse":
|
| 972 |
+
B, T, C, H, W = empty_recon.shape
|
| 973 |
+
x_rec_flat = empty_recon.view(B * T, C, H, W)
|
| 974 |
+
x_true_flat = empty_well_vol.view(B * T, C, H, W)
|
| 975 |
+
|
| 976 |
+
mse_loss = F.mse_loss(empty_recon, empty_well_vol)
|
| 977 |
+
ms_ssim_val = ms_ssim(x_rec_flat, x_true_flat)
|
| 978 |
+
ms_ssim_loss = 1 - ms_ssim_val
|
| 979 |
+
|
| 980 |
+
rec_loss_empty = rec_weight * mse_loss + ms_ssim_weight * ms_ssim_loss
|
| 981 |
+
rec_metrics_empty = {
|
| 982 |
+
"mse_loss": mse_loss.item(),
|
| 983 |
+
"ms_ssim_loss": ms_ssim_loss.item(),
|
| 984 |
+
"ms_ssim_value": ms_ssim_val.item()
|
| 985 |
+
}
|
| 986 |
+
|
| 987 |
+
# Total reconstruction loss
|
| 988 |
+
rec_loss = rec_loss_embryo + rec_loss_empty
|
| 989 |
+
|
| 990 |
+
# Temporal smoothness loss (with configurable weight)
|
| 991 |
+
if temporal_weight > 0:
|
| 992 |
+
smooth_loss_embryo = temporal_smoothness_loss(embryo_lat, weight=temporal_weight)
|
| 993 |
+
smooth_loss_empty = temporal_smoothness_loss(empty_lat, weight=temporal_weight)
|
| 994 |
+
smooth_loss = smooth_loss_embryo + smooth_loss_empty
|
| 995 |
+
loss = rec_loss + smooth_loss
|
| 996 |
+
else:
|
| 997 |
+
smooth_loss = torch.tensor(0.0, device=DEVICE)
|
| 998 |
+
loss = rec_loss
|
| 999 |
+
|
| 1000 |
+
if torch.isnan(loss) or torch.isinf(loss):
|
| 1001 |
+
print(f"NaN/Inf detected, skipping batch")
|
| 1002 |
+
continue
|
| 1003 |
+
|
| 1004 |
+
loss.backward()
|
| 1005 |
+
total_norm = 0
|
| 1006 |
+
for p in model.parameters():
|
| 1007 |
+
if p.grad is not None:
|
| 1008 |
+
param_norm = p.grad.data.norm(2)
|
| 1009 |
+
total_norm += param_norm.item() ** 2
|
| 1010 |
+
total_norm = total_norm ** 0.5
|
| 1011 |
+
|
| 1012 |
+
if total_norm > 100:
|
| 1013 |
+
print(f"Warning: Large gradient norm: {total_norm:.2f}")
|
| 1014 |
+
|
| 1015 |
+
torch.nn.utils.clip_grad_norm_(model.parameters(), 5)
|
| 1016 |
+
scheduler.step()
|
| 1017 |
+
optimizer.step()
|
| 1018 |
+
total += loss.item()
|
| 1019 |
+
count += 1
|
| 1020 |
+
|
| 1021 |
+
if (index % 50 == 0) and run is not None:
|
| 1022 |
+
log_dict = {
|
| 1023 |
+
"step": epoch * len(loader) + index,
|
| 1024 |
+
"loss": loss.item(),
|
| 1025 |
+
"rec_loss": rec_loss.item(),
|
| 1026 |
+
"rec_loss_embryo": rec_loss_embryo.item(),
|
| 1027 |
+
"rec_loss_empty": rec_loss_empty.item(),
|
| 1028 |
+
"smooth_loss": smooth_loss.item(),
|
| 1029 |
+
"ms_ssim_embryo": rec_metrics_embryo["ms_ssim_value"],
|
| 1030 |
+
"ms_ssim_empty": rec_metrics_empty["ms_ssim_value"],
|
| 1031 |
+
"lr": scheduler.get_last_lr()[0]
|
| 1032 |
+
}
|
| 1033 |
+
|
| 1034 |
+
# Add loss-specific metrics
|
| 1035 |
+
if loss_type == "l1":
|
| 1036 |
+
log_dict["l1_loss_embryo"] = rec_metrics_embryo["l1_loss"]
|
| 1037 |
+
log_dict["l1_loss_empty"] = rec_metrics_empty["l1_loss"]
|
| 1038 |
+
elif loss_type == "mse":
|
| 1039 |
+
log_dict["mse_loss_embryo"] = rec_metrics_embryo["mse_loss"]
|
| 1040 |
+
log_dict["mse_loss_empty"] = rec_metrics_empty["mse_loss"]
|
| 1041 |
+
|
| 1042 |
+
run.log(log_dict)
|
| 1043 |
+
|
| 1044 |
+
pbar.set_postfix(
|
| 1045 |
+
loss=f"{loss.item():.4f}",
|
| 1046 |
+
rec_e=f"{rec_loss_embryo.item():.4f}",
|
| 1047 |
+
rec_empty=f"{rec_loss_empty.item():.4f}",
|
| 1048 |
+
smooth=f"{smooth_loss.item():.4f}"
|
| 1049 |
+
)
|
| 1050 |
+
|
| 1051 |
+
avg_loss = total/max(1, count)
|
| 1052 |
+
run.log({"avg_loss": avg_loss})
|
| 1053 |
+
print(f"epoch {epoch} avg loss={avg_loss:.4f}")
|
| 1054 |
+
|
| 1055 |
+
# Save the state dict
|
| 1056 |
+
torch.save(model.state_dict(), "convlstm_latent_split_weights.pth")
|
| 1057 |
+
|
| 1058 |
+
# Generate unique repo name based on config and code
|
| 1059 |
+
date_label = datetime.now().strftime("%Y-%m-%d")
|
| 1060 |
+
|
| 1061 |
+
# Collect all config for hashing
|
| 1062 |
+
config_for_hash = {
|
| 1063 |
+
"mode": "convlstm_latent_split",
|
| 1064 |
+
"loss_type": loss_type,
|
| 1065 |
+
"ms_ssim_weight": ms_ssim_weight,
|
| 1066 |
+
"rec_weight": rec_weight,
|
| 1067 |
+
"temporal_weight": temporal_weight,
|
| 1068 |
+
"dropout_rate": dropout_rate,
|
| 1069 |
+
"use_convlstm": use_convlstm,
|
| 1070 |
+
"use_residual": use_residual,
|
| 1071 |
+
"use_batchnorm": use_batchnorm,
|
| 1072 |
+
"use_latent_split": True,
|
| 1073 |
+
"learning_rate": 2e-4,
|
| 1074 |
+
"encoder_hidden_dim": 256,
|
| 1075 |
+
"encoder_layers": 2,
|
| 1076 |
+
"decoder_hidden_dim": 128,
|
| 1077 |
+
"decoder_layers": 2,
|
| 1078 |
+
"latent_size": latent_size,
|
| 1079 |
+
"embryo_latent_size": 2048,
|
| 1080 |
+
"empty_latent_size": 2048,
|
| 1081 |
+
"seq_len": 50,
|
| 1082 |
+
"image_size": 128,
|
| 1083 |
+
}
|
| 1084 |
+
|
| 1085 |
+
# Required files for ConvLSTM model with latent split
|
| 1086 |
+
required_files = [
|
| 1087 |
+
"train.py",
|
| 1088 |
+
"raffael_model.py",
|
| 1089 |
+
"raffael_losses.py",
|
| 1090 |
+
"raffael_conv_lstm.py",
|
| 1091 |
+
"dataset_ivf.py",
|
| 1092 |
+
"train_model.sh",
|
| 1093 |
+
"training_config.txt",
|
| 1094 |
+
"training_config_latent_split.txt",
|
| 1095 |
+
]
|
| 1096 |
+
|
| 1097 |
+
# Generate unique repo name
|
| 1098 |
+
repo_name = generate_repo_name("convlstm-ls", config_for_hash, required_files, date_label)
|
| 1099 |
+
|
| 1100 |
+
# Create comprehensive config for HuggingFace
|
| 1101 |
+
hf_config = {
|
| 1102 |
+
"model_type": "ConvLSTMAutoencoder",
|
| 1103 |
+
"architecture": "ConvLSTM Autoencoder with Latent Split",
|
| 1104 |
+
# Model architecture parameters
|
| 1105 |
+
"seq_len": 50,
|
| 1106 |
+
"input_channels": 1,
|
| 1107 |
+
"encoder_hidden_dim": 256,
|
| 1108 |
+
"encoder_layers": 2,
|
| 1109 |
+
"decoder_hidden_dim": 128,
|
| 1110 |
+
"decoder_layers": 2,
|
| 1111 |
+
"latent_size": latent_size,
|
| 1112 |
+
"use_classifier": False,
|
| 1113 |
+
"num_classes": 2,
|
| 1114 |
+
"use_latent_split": True,
|
| 1115 |
+
"embryo_latent_size": 2048,
|
| 1116 |
+
"empty_latent_size": 2048,
|
| 1117 |
+
"image_size": 128,
|
| 1118 |
+
# Ablation parameters
|
| 1119 |
+
"dropout_rate": dropout_rate,
|
| 1120 |
+
"use_convlstm": use_convlstm,
|
| 1121 |
+
"use_residual": use_residual,
|
| 1122 |
+
"use_batchnorm": use_batchnorm,
|
| 1123 |
+
# Loss configuration
|
| 1124 |
+
"loss_type": loss_type,
|
| 1125 |
+
"ms_ssim_weight": ms_ssim_weight,
|
| 1126 |
+
"rec_weight": rec_weight,
|
| 1127 |
+
"temporal_weight": temporal_weight,
|
| 1128 |
+
"loss_description": loss_description,
|
| 1129 |
+
# Training configuration
|
| 1130 |
+
"learning_rate": 2e-4,
|
| 1131 |
+
"weight_decay": 1e-5,
|
| 1132 |
+
"optimizer": "Adam",
|
| 1133 |
+
"scheduler": "CosineAnnealingLR",
|
| 1134 |
+
"batch_size": 1,
|
| 1135 |
+
"epochs": 10,
|
| 1136 |
+
"gradient_clip": 5.0,
|
| 1137 |
+
# Dataset
|
| 1138 |
+
"dataset": "https://zenodo.org/records/7912264",
|
| 1139 |
+
"resize": 128,
|
| 1140 |
+
"normalization": "minmax01",
|
| 1141 |
+
# Reproducibility
|
| 1142 |
+
"repo_name": repo_name,
|
| 1143 |
+
"date": date_label,
|
| 1144 |
+
"hash": repo_name.split("-")[-2] if "-" in repo_name else "",
|
| 1145 |
+
}
|
| 1146 |
+
|
| 1147 |
+
save_and_push_model(model, model_name + "-" + date_label, required_files, model_config=hf_config)
|
| 1148 |
+
val_metrics = {
|
| 1149 |
+
'mse': RunningStats(),
|
| 1150 |
+
'l1': RunningStats(),
|
| 1151 |
+
'ssim': RunningStats(),
|
| 1152 |
+
'temp': RunningStats()
|
| 1153 |
+
}
|
| 1154 |
+
model.eval() # Set model to evaluation mode
|
| 1155 |
+
with torch.no_grad():
|
| 1156 |
+
for embryo_vol, _, _ in val_loader:
|
| 1157 |
+
embryo_vol = embryo_vol.to(DEVICE) # (1, T, 1, H, W)
|
| 1158 |
+
val_recon, val_lat = model(embryo_vol, empty_well=False)
|
| 1159 |
+
_, empty_val_lat = model(embryo_vol, empty_well=True)
|
| 1160 |
+
val_lat = torch.cat([val_lat, empty_val_lat], dim= 2)
|
| 1161 |
+
B, T, C, H, W = embryo_vol.shape
|
| 1162 |
+
|
| 1163 |
+
# MSE
|
| 1164 |
+
val_metrics['mse'].push(F.mse_loss(val_recon, embryo_vol).item())
|
| 1165 |
+
|
| 1166 |
+
# L1
|
| 1167 |
+
val_metrics['l1'].push(F.l1_loss(val_recon, embryo_vol).item())
|
| 1168 |
+
|
| 1169 |
+
# MS-SSIM
|
| 1170 |
+
val_recon_flat = val_recon.view(B * T, C, H, W)
|
| 1171 |
+
embryo_vol_flat = embryo_vol.view(B * T, C, H, W)
|
| 1172 |
+
ms_ssim_val = ms_ssim(val_recon_flat, embryo_vol_flat)
|
| 1173 |
+
val_metrics['ssim'].push((1 - ms_ssim_val).item())
|
| 1174 |
+
|
| 1175 |
+
# Temporal smoothness of latents
|
| 1176 |
+
# val_lat is (B, T, latent_size)
|
| 1177 |
+
if T > 1:
|
| 1178 |
+
lat_diff = torch.diff(val_lat, dim=1) # (B, T-1, latent_size)
|
| 1179 |
+
temporal_smooth = lat_diff.norm(dim=-1).mean() # Average L2 norm of differences
|
| 1180 |
+
# Log to wandb with val_ prefix
|
| 1181 |
+
val_log_dict = {
|
| 1182 |
+
f"val_{key}": value.mean for key, value in val_metrics.items()
|
| 1183 |
+
}
|
| 1184 |
+
val_log_std_dict = {
|
| 1185 |
+
f"val_{key}_std": value.std_dev for key, value in val_metrics.items()
|
| 1186 |
+
}
|
| 1187 |
+
|
| 1188 |
+
run.log(val_log_dict)
|
| 1189 |
+
run.log(val_log_std_dict)
|
| 1190 |
+
|
| 1191 |
+
run.finish()
|
| 1192 |
+
gc.collect()
|
| 1193 |
+
torch.cuda.empty_cache()
|
| 1194 |
+
|
| 1195 |
+
def train_mse_distributed():
|
| 1196 |
+
print("hi")
|
| 1197 |
+
def train_mse_single():
|
| 1198 |
+
print("hi")
|
| 1199 |
+
def train():
|
| 1200 |
+
print("hi")
|
| 1201 |
+
|
| 1202 |
+
if __name__ == "__main__":
|
| 1203 |
+
import sys
|
| 1204 |
+
import argparse
|
| 1205 |
+
|
| 1206 |
+
# Check if using old command line interface
|
| 1207 |
+
if len(sys.argv) > 1 and sys.argv[1] in ["mse_distributed", "mse_single", "convlstm", "convlstm_latent_split"]:
|
| 1208 |
+
mode = sys.argv[1]
|
| 1209 |
+
if mode == "mse_distributed":
|
| 1210 |
+
train_mse_distributed()
|
| 1211 |
+
elif mode == "mse_single":
|
| 1212 |
+
train_mse_single()
|
| 1213 |
+
elif mode == "convlstm":
|
| 1214 |
+
# Parse additional convlstm arguments with ablation support
|
| 1215 |
+
parser = argparse.ArgumentParser(description="Train ConvLSTM Autoencoder with Ablation Studies")
|
| 1216 |
+
parser.add_argument("mode", type=str, help="Training mode")
|
| 1217 |
+
|
| 1218 |
+
# Loss ablation arguments
|
| 1219 |
+
parser.add_argument("--loss-type", type=str, default="l1", choices=["l1", "mse"],
|
| 1220 |
+
help="Reconstruction loss type: l1 or mse (default: l1)")
|
| 1221 |
+
parser.add_argument("--ms-ssim-weight", type=float, default=0.5,
|
| 1222 |
+
help="Weight for MS-SSIM loss (default: 0.5, set to 0 to disable)")
|
| 1223 |
+
parser.add_argument("--rec-weight", type=float, default=0.5,
|
| 1224 |
+
help="Weight for reconstruction loss (default: 0.5, set to 0 to disable)")
|
| 1225 |
+
parser.add_argument("--temporal-weight", type=float, default=0.1,
|
| 1226 |
+
help="Weight for temporal smoothness loss (default: 0.1, set to 0 to disable)")
|
| 1227 |
+
|
| 1228 |
+
# Model ablation arguments
|
| 1229 |
+
parser.add_argument("--dropout-rate", type=float, default=0.1,
|
| 1230 |
+
help="Dropout rate (default: 0.1, set to 0 to disable)")
|
| 1231 |
+
parser.add_argument("--no-convlstm", action="store_true",
|
| 1232 |
+
help="Disable ConvLSTM (no temporal modeling)")
|
| 1233 |
+
parser.add_argument("--no-residual", action="store_true",
|
| 1234 |
+
help="Disable residual connections")
|
| 1235 |
+
parser.add_argument("--no-batchnorm", action="store_true",
|
| 1236 |
+
help="Disable batch normalization")
|
| 1237 |
+
parser.add_argument("--name", type=str, default="", help="model name duhh")
|
| 1238 |
+
parser.add_argument("--size", type=int, default=4096, help="lat size bruh")
|
| 1239 |
+
args = parser.parse_args()
|
| 1240 |
+
|
| 1241 |
+
train_convlstm(
|
| 1242 |
+
loss_type=args.loss_type,
|
| 1243 |
+
ms_ssim_weight=args.ms_ssim_weight,
|
| 1244 |
+
rec_weight=args.rec_weight,
|
| 1245 |
+
temporal_weight=args.temporal_weight,
|
| 1246 |
+
dropout_rate=args.dropout_rate,
|
| 1247 |
+
use_convlstm=not args.no_convlstm,
|
| 1248 |
+
use_residual=not args.no_residual,
|
| 1249 |
+
use_batchnorm=not args.no_batchnorm,
|
| 1250 |
+
model_name = args.name,
|
| 1251 |
+
latent_size = args.size
|
| 1252 |
+
|
| 1253 |
+
)
|
| 1254 |
+
elif mode == "convlstm_latent_split":
|
| 1255 |
+
# Parse additional convlstm_latent_split arguments with ablation support
|
| 1256 |
+
parser = argparse.ArgumentParser(description="Train ConvLSTM Autoencoder with Latent Split and Ablation Studies")
|
| 1257 |
+
parser.add_argument("mode", type=str, help="Training mode")
|
| 1258 |
+
|
| 1259 |
+
# Loss ablation arguments
|
| 1260 |
+
parser.add_argument("--loss-type", type=str, default="l1", choices=["l1", "mse"],
|
| 1261 |
+
help="Reconstruction loss type: l1 or mse (default: l1)")
|
| 1262 |
+
parser.add_argument("--ms-ssim-weight", type=float, default=0.5,
|
| 1263 |
+
help="Weight for MS-SSIM loss (default: 0.5, set to 0 to disable)")
|
| 1264 |
+
parser.add_argument("--rec-weight", type=float, default=0.5,
|
| 1265 |
+
help="Weight for reconstruction loss (default: 0.5, set to 0 to disable)")
|
| 1266 |
+
parser.add_argument("--temporal-weight", type=float, default=0.1,
|
| 1267 |
+
help="Weight for temporal smoothness loss (default: 0.1, set to 0 to disable)")
|
| 1268 |
+
|
| 1269 |
+
# Model ablation arguments
|
| 1270 |
+
parser.add_argument("--dropout-rate", type=float, default=0.1,
|
| 1271 |
+
help="Dropout rate (default: 0.1, set to 0 to disable)")
|
| 1272 |
+
parser.add_argument("--no-convlstm", action="store_true",
|
| 1273 |
+
help="Disable ConvLSTM (no temporal modeling)")
|
| 1274 |
+
parser.add_argument("--no-residual", action="store_true",
|
| 1275 |
+
help="Disable residual connections")
|
| 1276 |
+
parser.add_argument("--no-batchnorm", action="store_true",
|
| 1277 |
+
help="Disable batch normalization")
|
| 1278 |
+
|
| 1279 |
+
parser.add_argument("--name", type=str, default="", help="model name duhh")
|
| 1280 |
+
|
| 1281 |
+
parser.add_argument("--size", type=int, default=4096, help="lat size bruh")
|
| 1282 |
+
args = parser.parse_args()
|
| 1283 |
+
|
| 1284 |
+
train_convlstm_latent_split(
|
| 1285 |
+
loss_type=args.loss_type,
|
| 1286 |
+
ms_ssim_weight=args.ms_ssim_weight,
|
| 1287 |
+
rec_weight=args.rec_weight,
|
| 1288 |
+
temporal_weight=args.temporal_weight,
|
| 1289 |
+
dropout_rate=args.dropout_rate,
|
| 1290 |
+
use_convlstm=not args.no_convlstm,
|
| 1291 |
+
use_residual=not args.no_residual,
|
| 1292 |
+
use_batchnorm=not args.no_batchnorm,
|
| 1293 |
+
model_name = args.name,
|
| 1294 |
+
latent_size = args.size
|
| 1295 |
+
)
|
| 1296 |
+
else:
|
| 1297 |
+
train()
|