Text Generation
Transformers
TensorBoard
Safetensors
biology
genomics
rna
sequence-generation
regression
reinforcement-learning
git-lfs
Instructions to use JoyXiangLab/rnaseek-full with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use JoyXiangLab/rnaseek-full with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("text-generation", model="JoyXiangLab/rnaseek-full")# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("JoyXiangLab/rnaseek-full", device_map="auto") - Notebooks
- Google Colab
- Kaggle
- Local Apps Settings
- vLLM
How to use JoyXiangLab/rnaseek-full with vLLM:
Install from pip and serve model
# Install vLLM from pip: pip install vllm # Start the vLLM server: vllm serve "JoyXiangLab/rnaseek-full" # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:8000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "JoyXiangLab/rnaseek-full", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker
docker model run hf.co/JoyXiangLab/rnaseek-full
- SGLang
How to use JoyXiangLab/rnaseek-full with SGLang:
Install from pip and serve model
# Install SGLang from pip: pip install sglang # Start the SGLang server: python3 -m sglang.launch_server \ --model-path "JoyXiangLab/rnaseek-full" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "JoyXiangLab/rnaseek-full", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker images
docker run --gpus all \ --shm-size 32g \ -p 30000:30000 \ -v ~/.cache/huggingface:/root/.cache/huggingface \ --env "HF_TOKEN=<secret>" \ --ipc=host \ lmsysorg/sglang:latest \ python3 -m sglang.launch_server \ --model-path "JoyXiangLab/rnaseek-full" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "JoyXiangLab/rnaseek-full", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }' - Docker Model Runner
How to use JoyXiangLab/rnaseek-full with Docker Model Runner:
docker model run hf.co/JoyXiangLab/rnaseek-full
File size: 3,879 Bytes
83ddd7e | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 | # Copyright 2025 the LlamaFactory team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from collections import defaultdict
from typing import TYPE_CHECKING, Any, Optional
from ...extras import logging
from ..data_utils import Role
from .processor_utils import DatasetProcessor, infer_seqlen
if TYPE_CHECKING:
from ..mm_plugin import AudioInput, ImageInput, VideoInput
logger = logging.get_logger(__name__)
class UnsupervisedDatasetProcessor(DatasetProcessor):
def _encode_data_example(
self,
prompt: list[dict[str, str]],
response: list[dict[str, str]],
system: Optional[str],
tools: Optional[str],
images: list["ImageInput"],
videos: list["VideoInput"],
audios: list["AudioInput"],
) -> tuple[list[int], list[int]]:
if len(response) == 1:
messages = prompt + response
else:
messages = prompt + [{"role": Role.ASSISTANT.value, "content": ""}]
messages = self.template.mm_plugin.process_messages(messages, images, videos, audios, self.processor)
input_ids, labels = self.template.encode_oneturn(self.tokenizer, messages, system, tools)
if self.template.efficient_eos:
labels += [self.tokenizer.eos_token_id]
input_ids, _ = self.template.mm_plugin.process_token_ids(
input_ids, None, images, videos, audios, self.tokenizer, self.processor
)
source_len, target_len = infer_seqlen(len(input_ids), len(labels), self.data_args.cutoff_len)
input_ids = input_ids[:source_len]
labels = labels[:target_len]
return input_ids, labels
def preprocess_dataset(self, examples: dict[str, list[Any]]) -> dict[str, list[Any]]:
# build inputs with format `<bos> X` and labels with format `Y <eos>`
model_inputs = defaultdict(list)
for i in range(len(examples["_prompt"])):
if len(examples["_prompt"][i]) % 2 != 1:
logger.warning_rank0(
"Dropped invalid example: {}".format(examples["_prompt"][i] + examples["_response"][i])
)
continue
input_ids, labels = self._encode_data_example(
prompt=examples["_prompt"][i],
response=examples["_response"][i],
system=examples["_system"][i],
tools=examples["_tools"][i],
images=examples["_images"][i] or [],
videos=examples["_videos"][i] or [],
audios=examples["_audios"][i] or [],
)
model_inputs["input_ids"].append(input_ids)
model_inputs["attention_mask"].append([1] * len(input_ids))
model_inputs["labels"].append(labels)
model_inputs["images"].append(examples["_images"][i])
model_inputs["videos"].append(examples["_videos"][i])
model_inputs["audios"].append(examples["_audios"][i])
return model_inputs
def print_data_example(self, example: dict[str, list[int]]) -> None:
print("input_ids:\n{}".format(example["input_ids"]))
print("inputs:\n{}".format(self.tokenizer.decode(example["input_ids"], skip_special_tokens=False)))
print("label_ids:\n{}".format(example["labels"]))
print("labels:\n{}".format(self.tokenizer.decode(example["labels"], skip_special_tokens=False)))
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