Text Generation
Transformers
TensorBoard
Safetensors
biology
genomics
rna
sequence-generation
regression
reinforcement-learning
git-lfs
Instructions to use JoyXiangLab/rnaseek-full with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use JoyXiangLab/rnaseek-full with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("text-generation", model="JoyXiangLab/rnaseek-full")# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("JoyXiangLab/rnaseek-full", device_map="auto") - Notebooks
- Google Colab
- Kaggle
- Local Apps Settings
- vLLM
How to use JoyXiangLab/rnaseek-full with vLLM:
Install from pip and serve model
# Install vLLM from pip: pip install vllm # Start the vLLM server: vllm serve "JoyXiangLab/rnaseek-full" # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:8000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "JoyXiangLab/rnaseek-full", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker
docker model run hf.co/JoyXiangLab/rnaseek-full
- SGLang
How to use JoyXiangLab/rnaseek-full with SGLang:
Install from pip and serve model
# Install SGLang from pip: pip install sglang # Start the SGLang server: python3 -m sglang.launch_server \ --model-path "JoyXiangLab/rnaseek-full" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "JoyXiangLab/rnaseek-full", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker images
docker run --gpus all \ --shm-size 32g \ -p 30000:30000 \ -v ~/.cache/huggingface:/root/.cache/huggingface \ --env "HF_TOKEN=<secret>" \ --ipc=host \ lmsysorg/sglang:latest \ python3 -m sglang.launch_server \ --model-path "JoyXiangLab/rnaseek-full" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "JoyXiangLab/rnaseek-full", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }' - Docker Model Runner
How to use JoyXiangLab/rnaseek-full with Docker Model Runner:
docker model run hf.co/JoyXiangLab/rnaseek-full
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83ddd7e | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 | # Copyright 2025 the LlamaFactory team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import pytest
from peft import LoraConfig, PeftModel, get_peft_model
from transformers import AutoModelForCausalLM, AutoTokenizer
from llamafactory.v1.plugins.model_plugins import peft as peft_module
from llamafactory.v1.plugins.model_plugins.peft import merge_and_export_model
TINY_MODEL = "llamafactory/tiny-random-qwen3"
@pytest.fixture(scope="module")
def model_path():
return TINY_MODEL
@pytest.fixture(scope="function")
def model(model_path):
return AutoModelForCausalLM.from_pretrained(model_path)
@pytest.fixture(scope="function")
def tokenizer(model_path):
return AutoTokenizer.from_pretrained(model_path)
@pytest.fixture(scope="function")
def adapter_path(tmp_path):
# Create a dummy adapter
lora_config = LoraConfig(
r=8,
lora_alpha=16,
target_modules=["q_proj", "v_proj"],
lora_dropout=0.05,
bias="none",
task_type="CAUSAL_LM",
)
base_model = AutoModelForCausalLM.from_pretrained(TINY_MODEL)
peft_model = get_peft_model(base_model, lora_config)
save_path = tmp_path / "test_adapter"
peft_model.save_pretrained(save_path)
return str(save_path)
def test_find_all_linear_modules(model):
"""Verify linear modules are discoverable and include q_proj / v_proj for tiny-random-qwen3."""
modules = peft_module._find_all_linear_modules(model)
expected_subset = {"q_proj", "v_proj"}
assert expected_subset.issubset(set(modules))
def test_get_lora_model(model):
"""Verify a PeftModel is returned and LoRA config takes effect."""
config = {"name": "lora", "r": 8, "target_modules": "all", "lora_alpha": 16}
model = peft_module.get_lora_model(model, config, is_train=True)
assert isinstance(model, PeftModel)
assert model.peft_config["default"].r == 8
assert "q_proj" in model.peft_config["default"].target_modules
def test_get_freeze_model_layers(model):
"""Verify layer-wise freezing: only the last layer stays trainable."""
# Freeze all but last layer
config = {"name": "freeze", "freeze_trainable_layers": 1, "freeze_trainable_modules": "all"}
# Ensure we start with something known
model = peft_module.get_freeze_model(model, config, is_train=True)
num_layers = model.config.num_hidden_layers
assert num_layers > 0
for name, param in model.named_parameters():
if f"layers.{num_layers - 1}" in name:
assert param.requires_grad, f"{name} should be trainable"
elif "layers.0" in name and num_layers > 1:
assert not param.requires_grad, f"{name} should be frozen"
def test_get_freeze_model_modules(model):
"""Verify module-wise freezing: only last-layer self_attn is trainable."""
# Freeze specific modules (e.g. only self_attn)
config = {"name": "freeze", "freeze_trainable_layers": 1, "freeze_trainable_modules": "self_attn"}
model = peft_module.get_freeze_model(model, config, is_train=True)
num_layers = model.config.num_hidden_layers
for name, param in model.named_parameters():
if f"layers.{num_layers - 1}" in name and "self_attn" in name:
assert param.requires_grad, f"{name} should be trainable"
else:
assert not param.requires_grad, f"{name} should be frozen"
def test_load_adapter_single_for_inference(model, adapter_path):
"""Verify single adapter is merged+unloaded in inference mode."""
# Test loading single adapter for inference (merge and unload)
model_result = peft_module.load_adapter(model, adapter_path, is_train=False)
assert not isinstance(model_result, PeftModel)
def test_load_adapter_resume_train(model, adapter_path):
"""Verify training mode returns a trainable PeftModel."""
# Test loading for training
model_result = peft_module.load_adapter(model, adapter_path, is_train=True)
assert isinstance(model_result, PeftModel)
def test_load_adapter_train_multiple_disallowed(model, adapter_path):
"""Verify multiple adapters are rejected in training mode."""
with pytest.raises(ValueError, match="only a single LoRA adapter"):
peft_module.load_adapter(model, [adapter_path, adapter_path], is_train=True)
def test_load_adapter_infer_multiple_merges(model, adapter_path):
"""Verify multiple adapters are merged in inference mode."""
# Test merging multiple adapters
model_result = peft_module.load_adapter(model, [adapter_path, adapter_path], is_train=False)
assert not isinstance(model_result, PeftModel)
def test_merge_and_export_model(tmp_path, adapter_path):
"""Verify merge_and_export_model produces export artifacts."""
export_dir = tmp_path / "export"
args_dict = {
"model": TINY_MODEL,
"peft_config": {
"name": "lora",
"adapter_name_or_path": adapter_path,
"export_dir": str(export_dir),
"export_size": 1,
"infer_dtype": "float16",
},
}
merge_and_export_model(args_dict)
assert export_dir.exists()
assert (export_dir / "config.json").exists()
assert (export_dir / "model.safetensors").exists()
assert (export_dir / "tokenizer_config.json").exists()
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