Text Generation
Transformers
TensorBoard
Safetensors
biology
genomics
rna
sequence-generation
regression
reinforcement-learning
git-lfs
Instructions to use JoyXiangLab/rnaseek-full with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use JoyXiangLab/rnaseek-full with Transformers:
# Use a pipeline as a high-level helper from transformers import pipeline pipe = pipeline("text-generation", model="JoyXiangLab/rnaseek-full")# Load model directly from transformers import AutoModel model = AutoModel.from_pretrained("JoyXiangLab/rnaseek-full", device_map="auto") - Notebooks
- Google Colab
- Kaggle
- Local Apps Settings
- vLLM
How to use JoyXiangLab/rnaseek-full with vLLM:
Install from pip and serve model
# Install vLLM from pip: pip install vllm # Start the vLLM server: vllm serve "JoyXiangLab/rnaseek-full" # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:8000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "JoyXiangLab/rnaseek-full", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker
docker model run hf.co/JoyXiangLab/rnaseek-full
- SGLang
How to use JoyXiangLab/rnaseek-full with SGLang:
Install from pip and serve model
# Install SGLang from pip: pip install sglang # Start the SGLang server: python3 -m sglang.launch_server \ --model-path "JoyXiangLab/rnaseek-full" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "JoyXiangLab/rnaseek-full", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }'Use Docker images
docker run --gpus all \ --shm-size 32g \ -p 30000:30000 \ -v ~/.cache/huggingface:/root/.cache/huggingface \ --env "HF_TOKEN=<secret>" \ --ipc=host \ lmsysorg/sglang:latest \ python3 -m sglang.launch_server \ --model-path "JoyXiangLab/rnaseek-full" \ --host 0.0.0.0 \ --port 30000 # Call the server using curl (OpenAI-compatible API): curl -X POST "http://localhost:30000/v1/completions" \ -H "Content-Type: application/json" \ --data '{ "model": "JoyXiangLab/rnaseek-full", "prompt": "Once upon a time,", "max_tokens": 512, "temperature": 0.5 }' - Docker Model Runner
How to use JoyXiangLab/rnaseek-full with Docker Model Runner:
docker model run hf.co/JoyXiangLab/rnaseek-full
| # Copyright 2025 HuggingFace Inc. and the LlamaFactory team. | |
| # | |
| # This code is inspired by the HuggingFace's transformers library. | |
| # https://github.com/huggingface/transformers/blob/v4.40.0/examples/pytorch/language-modeling/run_clm.py | |
| # | |
| # Licensed under the Apache License, Version 2.0 (the "License"); | |
| # you may not use this file except in compliance with the License. | |
| # You may obtain a copy of the License at | |
| # | |
| # http://www.apache.org/licenses/LICENSE-2.0 | |
| # | |
| # Unless required by applicable law or agreed to in writing, software | |
| # distributed under the License is distributed on an "AS IS" BASIS, | |
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | |
| # See the License for the specific language governing permissions and | |
| # limitations under the License. | |
| from dataclasses import dataclass | |
| from itertools import chain | |
| from typing import Any | |
| from .processor_utils import DatasetProcessor | |
| class PretrainDatasetProcessor(DatasetProcessor): | |
| def preprocess_dataset(self, examples: dict[str, list[Any]]) -> dict[str, list[Any]]: | |
| # build grouped texts with format `X1 X2 X3 ...` if packing is enabled | |
| eos_token = "<|end_of_text|>" if self.data_args.template == "llama3" else self.tokenizer.eos_token | |
| text_examples = [messages[0]["content"] + eos_token for messages in examples["_prompt"]] | |
| if not self.data_args.packing: | |
| if getattr(self.tokenizer, "add_bos_token", False): | |
| text_examples = [self.tokenizer.bos_token + example for example in text_examples] | |
| result = self.tokenizer( | |
| text_examples, add_special_tokens=False, truncation=True, max_length=self.data_args.cutoff_len | |
| ) | |
| else: | |
| tokenized_examples = self.tokenizer(text_examples, add_special_tokens=False) | |
| concatenated_examples = {k: list(chain(*tokenized_examples[k])) for k in tokenized_examples.keys()} | |
| total_length = len(concatenated_examples[list(concatenated_examples.keys())[0]]) | |
| block_size = self.data_args.cutoff_len | |
| total_length = (total_length // block_size) * block_size | |
| result = { | |
| k: [t[i : i + block_size] for i in range(0, total_length, block_size)] | |
| for k, t in concatenated_examples.items() | |
| } | |
| if getattr(self.tokenizer, "add_bos_token", False): | |
| for i in range(len(result["input_ids"])): | |
| result["input_ids"][i][0] = self.tokenizer.bos_token_id | |
| return result | |
| def print_data_example(self, example: dict[str, list[int]]) -> None: | |
| print("input_ids:\n{}".format(example["input_ids"])) | |
| print("inputs:\n{}".format(self.tokenizer.decode(example["input_ids"], skip_special_tokens=False))) | |