name: rnaseek
channels:
  - defaults
  - conda-forge
  - bioconda
dependencies:
  - python=3.11
  - pip
  - setuptools
  - wheel
  - packaging
  - ninja
  - pybind11
  - pytorch=2.10.0=gpu_cuda128_py311*
  - torchvision=0.25.0=cuda128py311*
  - torchaudio=2.10.0=cuda128py311*
  - pip:
      - flash-attn==2.6.3
      - torchcodec==0.10.0
      - numpy==2.3.5
      - pandas
      - scipy==1.16.3
      - scikit-learn==1.7.2
      - matplotlib==3.10.7
      - seaborn==0.13.2
      - biopython==1.86
      - cutadapt
      - multiqc
      - pysam==0.23.3
      - h5py==3.16.0
      - openpyxl==3.1.5
      - statsmodels==0.14.6
      - numba==0.62.1
      - pyarrow==21.0.0
      - ipykernel
      - ipywidgets==8.1.8
      - accelerate==1.13.0
      - transformers==5.5.4
      - datasets==4.8.4
      - peft==0.18.1
      - trl==1.0.0
      - bitsandbytes==0.48.2
      - safetensors==0.5.3
      - sentencepiece==0.2.1
      - tokenizers==0.22.1
      - tensorboard==2.20.0
      - fastapi==0.123.10
      - uvicorn==0.38.0
      - pydantic
      - psutil
      - requests
      - tqdm
      - ViennaRNA==2.7.0
      - logomaker==0.8.7
      - umap-learn==0.5.11
      - anndata==0.12.10
      - pydeseq2==0.5.4
      - zarr==3.1.6
      - librosa==0.11.0
      - audiomentations==0.43.1
      - soundfile==0.13.1
      - soxr==0.5.0.post1