KatLeChat commited on
Commit
304d046
·
verified ·
1 Parent(s): d0c2f79

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +6 -7
README.md CHANGED
@@ -7,13 +7,12 @@ tags:
7
  - EpiClass
8
  - pytorch
9
  ---
10
- Epigenome Assay/Target classifier trained on the EpiATLAS dataset. The classes are IHEC reference epigenome assays:
11
- - Seven (7) ChIP-Seq assays: H3k27ac, H3k27me3, H3k36me3, H3k4me1, H3k4me3, H3k9me3, input
12
- - Two (2) RNA-Seq protocols (total/mrna)
13
- - Two (2) WGBS protocols (pbat/standard)
14
 
15
- The model is a simple fense feedforward neural network, with one hidden layer of 3000 nodes.The model was trained using PyTorch Lightning. See Github repository [rabyj/epi_ml](https://github.com/rabyj/epi_ml/blob/master/src/python/epi_ml/core/model_pytorch.py) for model code.
16
 
17
- See the .o and .e files for training details. More information is also available on Comet ML, in the rabyj/epiclass project. The ID of this training run is [0f8e5eb996114868a17057bebe64f87c](https://www.comet.com/rabyj/epiclass/0f8e5eb996114868a17057bebe64f87c)
18
 
19
- For more context, like the associated publication, see the EpiClass collection details.
 
 
 
7
  - EpiClass
8
  - pytorch
9
  ---
10
+ # Epigenomic Classifer - Assay
 
 
 
11
 
12
+ Epigenome Assay/Target classifier trained on the [EpiATLAS dataset](https://ihec-epigenomes.org/epiatlas/data/). The classes are IHEC reference epigenome ChIP assays (7 assays: H3k27ac, H3k27me3, H3k36me3, H3k4me1, H3k4me3, H3k9me3, input)
13
 
14
+ The model is a simple fense feedforward neural network, with one hidden layer of 3000 nodes.The model was trained using PyTorch Lightning. See Github repository [rabyj/epi_ml](https://github.com/rabyj/epi_ml/blob/master/src/python/epi_ml/core/model_pytorch.py) for model code.
15
 
16
+ See the .o and .e files for training details. More information is also available on Comet ML, in the rabyj/epiclass project. The ID of this training run is [69488630801b4a05a53b5d9e572f0aaa](https://www.comet.com/rabyj/epiclass/69488630801b4a05a53b5d9e572)
17
+
18
+ For more context, like the associated publication, see the EpiClass collection details.