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# Epigenomic Classifer - Assay
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Epigenome Assay/Target classifier trained on the [EpiATLAS dataset](https://ihec-epigenomes.org/epiatlas/data/). The classes
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The model is a simple fense feedforward neural network, with one hidden layer of 3000 nodes.The model was trained using PyTorch Lightning. See Github repository [rabyj/epi_ml](https://github.com/rabyj/epi_ml/blob/master/src/python/epi_ml/core/model_pytorch.py) for model code.
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# Epigenomic Classifer - Assay
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Epigenome Assay/Target classifier trained on the [EpiATLAS dataset](https://ihec-epigenomes.org/epiatlas/data/). The classes correspond to the minimal elements of the [IHEC reference epigenome](https://ihec-epigenomes.org/research/reference-epigenome-standards/index.html):
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- Seven (7) ChIP: assays H3k27ac, H3k27me3, H3k36me3, H3k4me1, H3k4me3, H3k9me3, input
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- RNA-Seq (two protocols, mrna/total)
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- WGBS (two protocols, pbat/standard)
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The model is a simple fense feedforward neural network, with one hidden layer of 3000 nodes.The model was trained using PyTorch Lightning. See Github repository [rabyj/epi_ml](https://github.com/rabyj/epi_ml/blob/master/src/python/epi_ml/core/model_pytorch.py) for model code.
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