geditingsoftware commited on
Commit ·
da9a6bd
1
Parent(s): 650ceb5
Updated README
Browse files
README.md
CHANGED
|
@@ -6,10 +6,19 @@ tags:
|
|
| 6 |
- biology
|
| 7 |
- medical
|
| 8 |
---
|
| 9 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 10 |
](https://huggingface.co/zhihan1996/DNABERT-2-117M).
|
| 11 |
|
| 12 |
-
The
|
| 13 |
|
| 14 |
Here is an example of using the model for RNA-off-target prediction.
|
| 15 |
|
|
|
|
| 6 |
- biology
|
| 7 |
- medical
|
| 8 |
---
|
| 9 |
+
|
| 10 |
+
#### Citation
|
| 11 |
+
|
| 12 |
+
If you find the model useful in your research, we ask that you cite the relevant paper:
|
| 13 |
+
|
| 14 |
+
- Nakamae *et al*. Risk Prediction of RNA Off-Targets of CRISPR Base Editors in Tissue-Specific Transcriptomes Using Language Models. *International Journal of Molecular Sciences* **2025**, 26(4), 1723.; [DOI: 10.3390/ijms26041723](https://doi.org/10.3390/ijms26041723)
|
| 15 |
+
|
| 16 |
+
---
|
| 17 |
+
|
| 18 |
+
This is one of the fine-tuned models, named RNAOffScan v1 (previously named as STL model), from [zhihan1996/DNABERT-2-117M
|
| 19 |
](https://huggingface.co/zhihan1996/DNABERT-2-117M).
|
| 20 |
|
| 21 |
+
The RNAOffScan v1 can predict the RNA offtarget induced by cytosine base editors (CBEs).
|
| 22 |
|
| 23 |
Here is an example of using the model for RNA-off-target prediction.
|
| 24 |
|