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- nnUNet_Large/fold_0_MRA/nnUNet_results/.DS_Store +0 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/.DS_Store +0 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/dataset.json +46 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/dataset_fingerprint.json +268 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/.DS_Store +0 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/checkpoint_best.pth +3 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/checkpoint_latest.pth +3 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/debug.json +55 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/progress.png +3 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/training_log_2026_10_18_08_03_10.txt +0 -0
- nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/plans.json +545 -0
.gitattributes
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nnUNet_Large/fold_0/nnUNet_results/Dataset001_CT/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/progress.png filter=lfs diff=lfs merge=lfs -text
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nnUNet_Large/fold_1/nnUNet_results/Dataset001_CT/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_1/progress.png filter=lfs diff=lfs merge=lfs -text
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nnUNet_Large/fold_0/nnUNet_results/Dataset001_CT/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/progress.png filter=lfs diff=lfs merge=lfs -text
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nnUNet_Large/fold_1/nnUNet_results/Dataset001_CT/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_1/progress.png filter=lfs diff=lfs merge=lfs -text
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nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/.DS_Store
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nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/dataset_fingerprint.json
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"configuration_manager": "{'data_identifier': 'nnUNetPlans_3d_fullres', 'preprocessor_name': 'DefaultPreprocessor', 'batch_size': 2, 'patch_size': [80, 256, 224], 'median_image_size_in_voxels': [186.0, 577.0, 480.0], 'spacing': [0.5999984741210938, 0.296875, 0.296875], 'normalization_schemes': ['ZScoreNormalization'], 'use_mask_for_norm': [False], 'resampling_fn_data': 'resample_data_or_seg_to_shape', 'resampling_fn_seg': 'resample_data_or_seg_to_shape', 'resampling_fn_data_kwargs': {'is_seg': False, 'order': 3, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_seg_kwargs': {'is_seg': True, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_probabilities': 'resample_data_or_seg_to_shape', 'resampling_fn_probabilities_kwargs': {'is_seg': False, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'architecture': {'network_class_name': 'dynamic_network_architectures.architectures.unet.ResidualEncoderUNet', 'arch_kwargs': {'n_stages': 6, 'features_per_stage': [32, 64, 128, 256, 320, 320], 'conv_op': 'torch.nn.modules.conv.Conv3d', 'kernel_sizes': [[1, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3]], 'strides': [[1, 1, 1], [1, 2, 2], [2, 2, 2], [2, 2, 2], [2, 2, 2], [2, 2, 2]], 'n_blocks_per_stage': [1, 3, 4, 6, 6, 6], 'n_conv_per_stage_decoder': [1, 1, 1, 1, 1], 'conv_bias': True, 'norm_op': 'torch.nn.modules.instancenorm.InstanceNorm3d', 'norm_op_kwargs': {'eps': 1e-05, 'affine': True}, 'dropout_op': None, 'dropout_op_kwargs': None, 'nonlin': 'torch.nn.LeakyReLU', 'nonlin_kwargs': {'inplace': True}}, '_kw_requires_import': ['conv_op', 'norm_op', 'dropout_op', 'nonlin']}, 'batch_dice': True}",
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"configuration_name": "3d_fullres",
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"current_epoch": "0",
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"dataloader_train.generator": "<nnunetv2.training.dataloading.data_loader.nnUNetDataLoader object at 0x7f7d7daf5400>",
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"dataloader_train.generator.transforms": "ComposeTransforms( transforms = [Convert3DTo2DTransform( ), SpatialTransform( patch_size = [256, 224], patch_center_dist_from_border = [0, 0], random_crop = False, p_elastic_deform = 0, elastic_deform_scale = (0, 0.2), elastic_deform_magnitude = (0, 0.2), p_rotation = 0.2, rotation = (-3.141592653589793, 3.141592653589793), p_rot_per_axis = 1, p_scaling = 0.2, scaling = (0.7, 1.4), p_synchronize_scaling_across_axes = 1, p_synchronize_def_scale_across_axes = 0, bg_style_seg_sampling = False, seg_tiebreak = 'nearest', mode_seg = 'bilinear', border_mode_seg = 'constant', center_deformation = True, mode_image = 'bilinear', padding_mode_image = 'zeros', padding_value_seg = -1, padding_value_image = 0, align_corners = False, _grid_cache = {} ), Convert2DTo3DTransform( ), RandomTransform(p=0.1, transform=GaussianNoiseTransform( noise_variance = (0, 0.1), p_per_channel = 1, synchronize_channels = True )), RandomTransform(p=0.2, transform=GaussianBlurTransform( blur_sigma = (0.5, 1.0), benchmark = True, synchronize_channels = False, synchronize_axes = False, p_per_channel = 0.5, benchmark_use_fft = {}, benchmark_num_runs = 9 )), RandomTransform(p=0.15, transform=MultiplicativeBrightnessTransform( multiplier_range = BGContrast(contrast_range=(0.75, 1.25)), synchronize_channels = False, p_per_channel = 1 )), RandomTransform(p=0.15, transform=ContrastTransform( contrast_range = BGContrast(contrast_range=(0.75, 1.25)), preserve_range = True, synchronize_channels = False, p_per_channel = 1.0 )), RandomTransform(p=0.25, transform=SimulateLowResolutionTransform( scale = (0.5, 1), synchronize_channels = False, synchronize_axes = True, ignore_axes = (0,), allowed_channels = None, p_per_channel = 0.5, upmodes = {1: 'linear', 2: 'bilinear', 3: 'trilinear'} )), RandomTransform(p=0.1, transform=GammaTransform( gamma = BGContrast(contrast_range=(0.7, 1.5)), p_invert_image = 1.0, synchronize_channels = False, p_per_channel = 1.0, p_retain_stats = 1.0 )), RandomTransform(p=0.3, transform=GammaTransform( gamma = BGContrast(contrast_range=(0.7, 1.5)), p_invert_image = 0.0, synchronize_channels = False, p_per_channel = 1.0, p_retain_stats = 1.0 )), MirrorTransform( allowed_axes = (0, 1, 2) ), RemoveLabelTransform( segmentation_channels = None, label_value = -1, set_to = 0 ), DownsampleSegForDSTransform( ds_scales = [[np.float64(1.0), np.float64(1.0), np.float64(1.0)], [np.float64(1.0), np.float64(0.5), np.float64(0.5)], [np.float64(0.5), np.float64(0.25), np.float64(0.25)], [np.float64(0.25), np.float64(0.125), np.float64(0.125)], [np.float64(0.125), np.float64(0.0625), np.float64(0.0625)]] )] )",
|
| 11 |
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"dataloader_train.num_processes": "8",
|
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"dataloader_train.transform": "None",
|
| 13 |
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"dataloader_val": "<batchgenerators.dataloading.nondet_multi_threaded_augmenter.NonDetMultiThreadedAugmenter object at 0x7f7d7dace710>",
|
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"dataloader_val.generator": "<nnunetv2.training.dataloading.data_loader.nnUNetDataLoader object at 0x7f7d7dace5d0>",
|
| 15 |
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"dataloader_val.generator.transforms": "ComposeTransforms( transforms = [RemoveLabelTransform( segmentation_channels = None, label_value = -1, set_to = 0 ), DownsampleSegForDSTransform( ds_scales = [[np.float64(1.0), np.float64(1.0), np.float64(1.0)], [np.float64(1.0), np.float64(0.5), np.float64(0.5)], [np.float64(0.5), np.float64(0.25), np.float64(0.25)], [np.float64(0.25), np.float64(0.125), np.float64(0.125)], [np.float64(0.125), np.float64(0.0625), np.float64(0.0625)]] )] )",
|
| 16 |
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"dataloader_val.num_processes": "4",
|
| 17 |
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"dataloader_val.transform": "None",
|
| 18 |
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"dataset_json": "{'channel_names': {'0': 'MRA'}, 'labels': {'background': 0, 'BA': 1, 'R-P1P2': 2, 'L-P1P2': 3, 'R-ICA-C6-C7': 4, 'R-M1': 5, 'L-ICA-C6-C7': 6, 'L-M1': 7, 'R-Pcom': 8, 'L-Pcom': 9, 'Acom': 10, 'R-A1A2': 11, 'L-A1A2': 12, 'R-A3': 13, 'L-A3': 14, '3rd-A2': 15, '3rd-A3': 16, 'R-M2': 17, 'R-M3': 18, 'L-M2': 19, 'L-M3': 20, 'R-P3P4': 21, 'L-P3P4': 22, 'R-VA': 23, 'L-VA': 24, 'R-SCA': 25, 'L-SCA': 26, 'R-AICA': 27, 'L-AICA': 28, 'R-PICA': 29, 'L-PICA': 30, 'R-AChA': 31, 'L-AChA': 32, 'R-OA': 33, 'L-OA': 34, 'R-ICA-C1-C5': 35, 'L-ICA-C1-C5': 36}, 'numTraining': 25, 'file_ending': '.nii.gz'}",
|
| 19 |
+
"device": "cuda:0",
|
| 20 |
+
"disable_checkpointing": "False",
|
| 21 |
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"enable_deep_supervision": "True",
|
| 22 |
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"fold": "0",
|
| 23 |
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"folder_with_segs_from_previous_stage": "None",
|
| 24 |
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"gpu_name": "NVIDIA RTX PRO 6000 Blackwell Server Edition",
|
| 25 |
+
"grad_scaler": "<torch.amp.grad_scaler.GradScaler object at 0x7f7d7de39d30>",
|
| 26 |
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"hostname": "0ec791b4-7f9c-4cdc-b373-e23e9835edc5-rddl6",
|
| 27 |
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"inference_allowed_mirroring_axes": "(0, 1, 2)",
|
| 28 |
+
"initial_lr": "0.01",
|
| 29 |
+
"is_cascaded": "False",
|
| 30 |
+
"is_ddp": "False",
|
| 31 |
+
"label_manager": "<nnunetv2.utilities.label_handling.label_handling.LabelManager object at 0x7f7d7de39be0>",
|
| 32 |
+
"local_rank": "0",
|
| 33 |
+
"log_file": "/marimo/TopBrain2026/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/training_log_2026_10_18_08_03_10.txt",
|
| 34 |
+
"logger": "<nnunetv2.training.logging.nnunet_logger.MetaLogger object at 0x7f7d7de39e80>",
|
| 35 |
+
"loss": "DeepSupervisionWrapper(\n (loss): DC_and_CE_loss(\n (ce): RobustCrossEntropyLoss()\n (dc): MemoryEfficientSoftDiceLoss()\n )\n)",
|
| 36 |
+
"lr_scheduler": "<nnunetv2.training.lr_scheduler.polylr.PolyLRScheduler object at 0x7f7d7de3b8c0>",
|
| 37 |
+
"my_init_kwargs": "{'plans': {'dataset_name': 'Dataset001_MRA', 'plans_name': 'nnUNetResEncUNetLPlans', 'original_median_spacing_after_transp': [0.5999984741210938, 0.296875, 0.296875], 'original_median_shape_after_transp': [186, 576, 480], 'image_reader_writer': 'SimpleITKIO', 'transpose_forward': [0, 1, 2], 'transpose_backward': [0, 1, 2], 'configurations': {'2d': {'data_identifier': 'nnUNetPlans_2d', 'preprocessor_name': 'DefaultPreprocessor', 'batch_size': 26, 'patch_size': [640, 512], 'median_image_size_in_voxels': [577.0, 480.0], 'spacing': [0.296875, 0.296875], 'normalization_schemes': ['ZScoreNormalization'], 'use_mask_for_norm': [False], 'resampling_fn_data': 'resample_data_or_seg_to_shape', 'resampling_fn_seg': 'resample_data_or_seg_to_shape', 'resampling_fn_data_kwargs': {'is_seg': False, 'order': 3, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_seg_kwargs': {'is_seg': True, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_probabilities': 'resample_data_or_seg_to_shape', 'resampling_fn_probabilities_kwargs': {'is_seg': False, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'architecture': {'network_class_name': 'dynamic_network_architectures.architectures.unet.ResidualEncoderUNet', 'arch_kwargs': {'n_stages': 8, 'features_per_stage': [32, 64, 128, 256, 512, 512, 512, 512], 'conv_op': 'torch.nn.modules.conv.Conv2d', 'kernel_sizes': [[3, 3], [3, 3], [3, 3], [3, 3], [3, 3], [3, 3], [3, 3], [3, 3]], 'strides': [[1, 1], [2, 2], [2, 2], [2, 2], [2, 2], [2, 2], [2, 2], [2, 2]], 'n_blocks_per_stage': [1, 3, 4, 6, 6, 6, 6, 6], 'n_conv_per_stage_decoder': [1, 1, 1, 1, 1, 1, 1], 'conv_bias': True, 'norm_op': 'torch.nn.modules.instancenorm.InstanceNorm2d', 'norm_op_kwargs': {'eps': 1e-05, 'affine': True}, 'dropout_op': None, 'dropout_op_kwargs': None, 'nonlin': 'torch.nn.LeakyReLU', 'nonlin_kwargs': {'inplace': True}}, '_kw_requires_import': ['conv_op', 'norm_op', 'dropout_op', 'nonlin']}, 'batch_dice': True}, '3d_lowres': {'data_identifier': 'nnUNetResEncUNetLPlans_3d_lowres', 'preprocessor_name': 'DefaultPreprocessor', 'batch_size': 2, 'patch_size': [96, 256, 256], 'median_image_size_in_voxels': [147, 442, 368], 'spacing': [0.7600601158948237, 0.387354538949307, 0.387354538949307], 'normalization_schemes': ['ZScoreNormalization'], 'use_mask_for_norm': [False], 'resampling_fn_data': 'resample_data_or_seg_to_shape', 'resampling_fn_seg': 'resample_data_or_seg_to_shape', 'resampling_fn_data_kwargs': {'is_seg': False, 'order': 3, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_seg_kwargs': {'is_seg': True, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_probabilities': 'resample_data_or_seg_to_shape', 'resampling_fn_probabilities_kwargs': {'is_seg': False, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'architecture': {'network_class_name': 'dynamic_network_architectures.architectures.unet.ResidualEncoderUNet', 'arch_kwargs': {'n_stages': 7, 'features_per_stage': [32, 64, 128, 256, 320, 320, 320], 'conv_op': 'torch.nn.modules.conv.Conv3d', 'kernel_sizes': [[3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3]], 'strides': [[1, 1, 1], [2, 2, 2], [2, 2, 2], [2, 2, 2], [2, 2, 2], [1, 2, 2], [1, 2, 2]], 'n_blocks_per_stage': [1, 3, 4, 6, 6, 6, 6], 'n_conv_per_stage_decoder': [1, 1, 1, 1, 1, 1], 'conv_bias': True, 'norm_op': 'torch.nn.modules.instancenorm.InstanceNorm3d', 'norm_op_kwargs': {'eps': 1e-05, 'affine': True}, 'dropout_op': None, 'dropout_op_kwargs': None, 'nonlin': 'torch.nn.LeakyReLU', 'nonlin_kwargs': {'inplace': True}}, '_kw_requires_import': ['conv_op', 'norm_op', 'dropout_op', 'nonlin']}, 'batch_dice': False, 'next_stage': '3d_cascade_fullres'}, '3d_fullres': {'data_identifier': 'nnUNetPlans_3d_fullres', 'preprocessor_name': 'DefaultPreprocessor', 'batch_size': 2, 'patch_size': [80, 256, 224], 'median_image_size_in_voxels': [186.0, 577.0, 480.0], 'spacing': [0.5999984741210938, 0.296875, 0.296875], 'normalization_schemes': ['ZScoreNormalization'], 'use_mask_for_norm': [False], 'resampling_fn_data': 'resample_data_or_seg_to_shape', 'resampling_fn_seg': 'resample_data_or_seg_to_shape', 'resampling_fn_data_kwargs': {'is_seg': False, 'order': 3, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_seg_kwargs': {'is_seg': True, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_probabilities': 'resample_data_or_seg_to_shape', 'resampling_fn_probabilities_kwargs': {'is_seg': False, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'architecture': {'network_class_name': 'dynamic_network_architectures.architectures.unet.ResidualEncoderUNet', 'arch_kwargs': {'n_stages': 6, 'features_per_stage': [32, 64, 128, 256, 320, 320], 'conv_op': 'torch.nn.modules.conv.Conv3d', 'kernel_sizes': [[1, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3]], 'strides': [[1, 1, 1], [1, 2, 2], [2, 2, 2], [2, 2, 2], [2, 2, 2], [2, 2, 2]], 'n_blocks_per_stage': [1, 3, 4, 6, 6, 6], 'n_conv_per_stage_decoder': [1, 1, 1, 1, 1], 'conv_bias': True, 'norm_op': 'torch.nn.modules.instancenorm.InstanceNorm3d', 'norm_op_kwargs': {'eps': 1e-05, 'affine': True}, 'dropout_op': None, 'dropout_op_kwargs': None, 'nonlin': 'torch.nn.LeakyReLU', 'nonlin_kwargs': {'inplace': True}}, '_kw_requires_import': ['conv_op', 'norm_op', 'dropout_op', 'nonlin']}, 'batch_dice': True}, '3d_cascade_fullres': {'inherits_from': '3d_fullres', 'previous_stage': '3d_lowres'}}, 'experiment_planner_used': 'nnUNetPlannerResEncL', 'label_manager': 'LabelManager', 'foreground_intensity_properties_per_channel': {'0': {'max': 1421.0, 'mean': 324.5860900878906, 'median': 274.9985656738281, 'min': 52.99739456176758, 'percentile_00_5': 88.00049591064453, 'percentile_99_5': 896.009521484375, 'std': 170.6415252685547}}}, 'configuration': '3d_fullres', 'fold': 0, 'dataset_json': {'channel_names': {'0': 'MRA'}, 'labels': {'background': 0, 'BA': 1, 'R-P1P2': 2, 'L-P1P2': 3, 'R-ICA-C6-C7': 4, 'R-M1': 5, 'L-ICA-C6-C7': 6, 'L-M1': 7, 'R-Pcom': 8, 'L-Pcom': 9, 'Acom': 10, 'R-A1A2': 11, 'L-A1A2': 12, 'R-A3': 13, 'L-A3': 14, '3rd-A2': 15, '3rd-A3': 16, 'R-M2': 17, 'R-M3': 18, 'L-M2': 19, 'L-M3': 20, 'R-P3P4': 21, 'L-P3P4': 22, 'R-VA': 23, 'L-VA': 24, 'R-SCA': 25, 'L-SCA': 26, 'R-AICA': 27, 'L-AICA': 28, 'R-PICA': 29, 'L-PICA': 30, 'R-AChA': 31, 'L-AChA': 32, 'R-OA': 33, 'L-OA': 34, 'R-ICA-C1-C5': 35, 'L-ICA-C1-C5': 36}, 'numTraining': 25, 'file_ending': '.nii.gz'}, 'device': device(type='cuda')}",
|
| 38 |
+
"network": "ResidualEncoderUNet",
|
| 39 |
+
"num_epochs": "1000",
|
| 40 |
+
"num_input_channels": "1",
|
| 41 |
+
"num_iterations_per_epoch": "250",
|
| 42 |
+
"num_val_iterations_per_epoch": "50",
|
| 43 |
+
"optimizer": "SGD (\nParameter Group 0\n dampening: 0\n differentiable: False\n foreach: None\n fused: None\n initial_lr: 0.01\n lr: 0.01\n maximize: False\n momentum: 0.99\n nesterov: True\n weight_decay: 3e-05\n)",
|
| 44 |
+
"output_folder": "/marimo/TopBrain2026/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0",
|
| 45 |
+
"output_folder_base": "/marimo/TopBrain2026/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres",
|
| 46 |
+
"oversample_foreground_percent": "0.33",
|
| 47 |
+
"plans_manager": "{'dataset_name': 'Dataset001_MRA', 'plans_name': 'nnUNetResEncUNetLPlans', 'original_median_spacing_after_transp': [0.5999984741210938, 0.296875, 0.296875], 'original_median_shape_after_transp': [186, 576, 480], 'image_reader_writer': 'SimpleITKIO', 'transpose_forward': [0, 1, 2], 'transpose_backward': [0, 1, 2], 'configurations': {'2d': {'data_identifier': 'nnUNetPlans_2d', 'preprocessor_name': 'DefaultPreprocessor', 'batch_size': 26, 'patch_size': [640, 512], 'median_image_size_in_voxels': [577.0, 480.0], 'spacing': [0.296875, 0.296875], 'normalization_schemes': ['ZScoreNormalization'], 'use_mask_for_norm': [False], 'resampling_fn_data': 'resample_data_or_seg_to_shape', 'resampling_fn_seg': 'resample_data_or_seg_to_shape', 'resampling_fn_data_kwargs': {'is_seg': False, 'order': 3, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_seg_kwargs': {'is_seg': True, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_probabilities': 'resample_data_or_seg_to_shape', 'resampling_fn_probabilities_kwargs': {'is_seg': False, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'architecture': {'network_class_name': 'dynamic_network_architectures.architectures.unet.ResidualEncoderUNet', 'arch_kwargs': {'n_stages': 8, 'features_per_stage': [32, 64, 128, 256, 512, 512, 512, 512], 'conv_op': 'torch.nn.modules.conv.Conv2d', 'kernel_sizes': [[3, 3], [3, 3], [3, 3], [3, 3], [3, 3], [3, 3], [3, 3], [3, 3]], 'strides': [[1, 1], [2, 2], [2, 2], [2, 2], [2, 2], [2, 2], [2, 2], [2, 2]], 'n_blocks_per_stage': [1, 3, 4, 6, 6, 6, 6, 6], 'n_conv_per_stage_decoder': [1, 1, 1, 1, 1, 1, 1], 'conv_bias': True, 'norm_op': 'torch.nn.modules.instancenorm.InstanceNorm2d', 'norm_op_kwargs': {'eps': 1e-05, 'affine': True}, 'dropout_op': None, 'dropout_op_kwargs': None, 'nonlin': 'torch.nn.LeakyReLU', 'nonlin_kwargs': {'inplace': True}}, '_kw_requires_import': ['conv_op', 'norm_op', 'dropout_op', 'nonlin']}, 'batch_dice': True}, '3d_lowres': {'data_identifier': 'nnUNetResEncUNetLPlans_3d_lowres', 'preprocessor_name': 'DefaultPreprocessor', 'batch_size': 2, 'patch_size': [96, 256, 256], 'median_image_size_in_voxels': [147, 442, 368], 'spacing': [0.7600601158948237, 0.387354538949307, 0.387354538949307], 'normalization_schemes': ['ZScoreNormalization'], 'use_mask_for_norm': [False], 'resampling_fn_data': 'resample_data_or_seg_to_shape', 'resampling_fn_seg': 'resample_data_or_seg_to_shape', 'resampling_fn_data_kwargs': {'is_seg': False, 'order': 3, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_seg_kwargs': {'is_seg': True, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_probabilities': 'resample_data_or_seg_to_shape', 'resampling_fn_probabilities_kwargs': {'is_seg': False, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'architecture': {'network_class_name': 'dynamic_network_architectures.architectures.unet.ResidualEncoderUNet', 'arch_kwargs': {'n_stages': 7, 'features_per_stage': [32, 64, 128, 256, 320, 320, 320], 'conv_op': 'torch.nn.modules.conv.Conv3d', 'kernel_sizes': [[3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3]], 'strides': [[1, 1, 1], [2, 2, 2], [2, 2, 2], [2, 2, 2], [2, 2, 2], [1, 2, 2], [1, 2, 2]], 'n_blocks_per_stage': [1, 3, 4, 6, 6, 6, 6], 'n_conv_per_stage_decoder': [1, 1, 1, 1, 1, 1], 'conv_bias': True, 'norm_op': 'torch.nn.modules.instancenorm.InstanceNorm3d', 'norm_op_kwargs': {'eps': 1e-05, 'affine': True}, 'dropout_op': None, 'dropout_op_kwargs': None, 'nonlin': 'torch.nn.LeakyReLU', 'nonlin_kwargs': {'inplace': True}}, '_kw_requires_import': ['conv_op', 'norm_op', 'dropout_op', 'nonlin']}, 'batch_dice': False, 'next_stage': '3d_cascade_fullres'}, '3d_fullres': {'data_identifier': 'nnUNetPlans_3d_fullres', 'preprocessor_name': 'DefaultPreprocessor', 'batch_size': 2, 'patch_size': [80, 256, 224], 'median_image_size_in_voxels': [186.0, 577.0, 480.0], 'spacing': [0.5999984741210938, 0.296875, 0.296875], 'normalization_schemes': ['ZScoreNormalization'], 'use_mask_for_norm': [False], 'resampling_fn_data': 'resample_data_or_seg_to_shape', 'resampling_fn_seg': 'resample_data_or_seg_to_shape', 'resampling_fn_data_kwargs': {'is_seg': False, 'order': 3, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_seg_kwargs': {'is_seg': True, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'resampling_fn_probabilities': 'resample_data_or_seg_to_shape', 'resampling_fn_probabilities_kwargs': {'is_seg': False, 'order': 1, 'order_z': 0, 'force_separate_z': None}, 'architecture': {'network_class_name': 'dynamic_network_architectures.architectures.unet.ResidualEncoderUNet', 'arch_kwargs': {'n_stages': 6, 'features_per_stage': [32, 64, 128, 256, 320, 320], 'conv_op': 'torch.nn.modules.conv.Conv3d', 'kernel_sizes': [[1, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3], [3, 3, 3]], 'strides': [[1, 1, 1], [1, 2, 2], [2, 2, 2], [2, 2, 2], [2, 2, 2], [2, 2, 2]], 'n_blocks_per_stage': [1, 3, 4, 6, 6, 6], 'n_conv_per_stage_decoder': [1, 1, 1, 1, 1], 'conv_bias': True, 'norm_op': 'torch.nn.modules.instancenorm.InstanceNorm3d', 'norm_op_kwargs': {'eps': 1e-05, 'affine': True}, 'dropout_op': None, 'dropout_op_kwargs': None, 'nonlin': 'torch.nn.LeakyReLU', 'nonlin_kwargs': {'inplace': True}}, '_kw_requires_import': ['conv_op', 'norm_op', 'dropout_op', 'nonlin']}, 'batch_dice': True}, '3d_cascade_fullres': {'inherits_from': '3d_fullres', 'previous_stage': '3d_lowres'}}, 'experiment_planner_used': 'nnUNetPlannerResEncL', 'label_manager': 'LabelManager', 'foreground_intensity_properties_per_channel': {'0': {'max': 1421.0, 'mean': 324.5860900878906, 'median': 274.9985656738281, 'min': 52.99739456176758, 'percentile_00_5': 88.00049591064453, 'percentile_99_5': 896.009521484375, 'std': 170.6415252685547}}}",
|
| 48 |
+
"preprocessed_dataset_folder": "/marimo/TopBrain2026/nnUNet_preprocessed/Dataset001_MRA/nnUNetPlans_3d_fullres",
|
| 49 |
+
"preprocessed_dataset_folder_base": "/marimo/TopBrain2026/nnUNet_preprocessed/Dataset001_MRA",
|
| 50 |
+
"probabilistic_oversampling": "False",
|
| 51 |
+
"save_every": "50",
|
| 52 |
+
"torch_version": "2.11.0+cu130",
|
| 53 |
+
"was_initialized": "True",
|
| 54 |
+
"weight_decay": "3e-05"
|
| 55 |
+
}
|
nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/progress.png
ADDED
|
Git LFS Details
|
nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/nnUNetTrainer__nnUNetResEncUNetLPlans__3d_fullres/fold_0/training_log_2026_10_18_08_03_10.txt
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
nnUNet_Large/fold_0_MRA/nnUNet_results/Dataset001_MRA/plans.json
ADDED
|
@@ -0,0 +1,545 @@
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