Larrivhan commited on
Commit
61a0371
·
verified ·
1 Parent(s): 7333366

Add figures to the card

Browse files
Files changed (4) hide show
  1. .gitattributes +1 -0
  2. README.md +9 -0
  3. SHA256SUMS +1 -0
  4. figures/model_training.png +3 -0
.gitattributes CHANGED
@@ -48,3 +48,4 @@ training_contrasts/no_templates_8k/run/PLAN.json filter=lfs diff=lfs merge=lfs -
48
  training_contrasts/site_encoder_only_8k/run/PLAN.json filter=lfs diff=lfs merge=lfs -text
49
  training_contrasts/summaries_only_88k/run/PLAN.json filter=lfs diff=lfs merge=lfs -text
50
  training_contrasts/summaries_only_8k/run/PLAN.json filter=lfs diff=lfs merge=lfs -text
 
 
48
  training_contrasts/site_encoder_only_8k/run/PLAN.json filter=lfs diff=lfs merge=lfs -text
49
  training_contrasts/summaries_only_88k/run/PLAN.json filter=lfs diff=lfs merge=lfs -text
50
  training_contrasts/summaries_only_8k/run/PLAN.json filter=lfs diff=lfs merge=lfs -text
51
+ figures/model_training.png filter=lfs diff=lfs merge=lfs -text
README.md CHANGED
@@ -34,6 +34,7 @@ networks the paper compares it with.
34
  | `final/snapshots/epoch06/`, `epoch09/` | states saved after epochs 6 and 9 | 47 MB each |
35
  | `training_contrasts/` | 7 networks trained on 8,000 or 88,000 windows | 0.36 GB |
36
  | `ablations/` | 5 networks trained on 12,500 windows | 0.25 GB |
 
37
  | `SHA256SUMS` | a checksum for every file except this card | small |
38
 
39
  ## The network
@@ -59,6 +60,14 @@ baseline curve: the window's Watterson estimate of log10 Ne plus a fixed offset
59
  - **Test error.** 0.287: the root mean squared error of log10 Ne over all 64 intervals of the
60
  500 test windows taken together, from `final/test_predictions.npz`.
61
 
 
 
 
 
 
 
 
 
62
  ## Running it
63
 
64
  The network reads inputs built by the NeCast code (summary statistics, PSMC+ posteriors and the
 
34
  | `final/snapshots/epoch06/`, `epoch09/` | states saved after epochs 6 and 9 | 47 MB each |
35
  | `training_contrasts/` | 7 networks trained on 8,000 or 88,000 windows | 0.36 GB |
36
  | `ablations/` | 5 networks trained on 12,500 windows | 0.25 GB |
37
+ | `figures/` | the figure on this card | small |
38
  | `SHA256SUMS` | a checksum for every file except this card | small |
39
 
40
  ## The network
 
60
  - **Test error.** 0.287: the root mean squared error of log10 Ne over all 64 intervals of the
61
  500 test windows taken together, from `final/test_predictions.npz`.
62
 
63
+ ![Training and test error](https://huggingface.co/Larrivhan/NeCast/resolve/main/figures/model_training.png)
64
+
65
+ **a**, Training error and validation error after each of the 12 epochs, from
66
+ `final/DEVELOPMENT.json`; the validation windows are the 500 further training windows. **b**,
67
+ Test error in each of the 64 intervals (5-interval running mean), with the error over all
68
+ intervals as a dotted line. **c**, The test windows at the 10th, 50th and 90th percentiles of
69
+ per-window error: truth (black step) and NeCast (blue).
70
+
71
  ## Running it
72
 
73
  The network reads inputs built by the NeCast code (summary statistics, PSMC+ posteriors and the
SHA256SUMS CHANGED
@@ -73,6 +73,7 @@ f5d8b30b1d297929b731ea7a01e1ac6c71b1fbedf22a36ad7616dbf8d2a0ea09 ablations/summ
73
  c6fdaf5df9e564232d8b28929d1a749288d926b65dc45ee15015aaf5b1c472fa ablations/summaries_only_12500/run/summaries_only/checkpoint.pt
74
  34f1a287906e64937cdf73fa481bb7164dbc26ac82beb592a23c8ff890713a9b ablations/summaries_only_12500/run/summaries_only/mechanism_evaluation.npz
75
  fb5ec87b84a657081926b218cef0fa59455d3ef411c6ff913bd8e45448bdc82b ablations/summaries_only_12500/run/summaries_only/report.json
 
76
  49a40ada70aaf3390cbc15945ee38c28edd1e122760f7851d0769c098263f6a8 final/DEVELOPMENT.json
77
  39caf385d0ffcf1c243a4c7369c849a8ec3fc65e643e6038606fac0497e49cc7 final/DONE.json
78
  ce8c2e983648b28bb997f8a7c4d26cc239c7379a0fbf81371d7becdac0114e76 final/INTAKE_VERIFY.json
 
73
  c6fdaf5df9e564232d8b28929d1a749288d926b65dc45ee15015aaf5b1c472fa ablations/summaries_only_12500/run/summaries_only/checkpoint.pt
74
  34f1a287906e64937cdf73fa481bb7164dbc26ac82beb592a23c8ff890713a9b ablations/summaries_only_12500/run/summaries_only/mechanism_evaluation.npz
75
  fb5ec87b84a657081926b218cef0fa59455d3ef411c6ff913bd8e45448bdc82b ablations/summaries_only_12500/run/summaries_only/report.json
76
+ d0b8d9dcd1315e62716d41b2ebbceb7318b055593dcf2a114d274923138779c0 figures/model_training.png
77
  49a40ada70aaf3390cbc15945ee38c28edd1e122760f7851d0769c098263f6a8 final/DEVELOPMENT.json
78
  39caf385d0ffcf1c243a4c7369c849a8ec3fc65e643e6038606fac0497e49cc7 final/DONE.json
79
  ce8c2e983648b28bb997f8a7c4d26cc239c7379a0fbf81371d7becdac0114e76 final/INTAKE_VERIFY.json
figures/model_training.png ADDED

Git LFS Details

  • SHA256: d0b8d9dcd1315e62716d41b2ebbceb7318b055593dcf2a114d274923138779c0
  • Pointer size: 131 Bytes
  • Size of remote file: 130 kB