Upload 4 files
Browse filesnnInteractive_v1.0
nnInteractive_v1.0/dataset.json
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{
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"channel_names": {
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"0": "nonCT"
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},
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"file_ending": ".nii.gz",
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"labels":{"background": 0},
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"name": "Dataset225_nnInteractiveV2",
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"numTraining": 1,
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"overwrite_image_reader_writer": "NibabelIOWithReorient"
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}
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nnInteractive_v1.0/fold_0/checkpoint_final.pth
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version https://git-lfs.github.com/spec/v1
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oid sha256:b3ac4421f85457bbd1aa0d87f5e67bcb7bc8e2ce6b824b6ac45077cc5d630ea9
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size 411387150
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nnInteractive_v1.0/inference_session_class.json
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"nnInteractiveInferenceSessionV3"
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nnInteractive_v1.0/plans.json
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{
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"dataset_name": "Dataset225_nnInteractiveV2",
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"plans_name": "nnUNetResEncUNetLPlans_noResampling",
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"original_median_spacing_after_transp": [
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1.25,
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1.0,
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1.0
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],
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"original_median_shape_after_transp": [
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139,
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250
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],
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"image_reader_writer": "NibabelIOWithReorient",
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"transpose_forward": [
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0,
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1,
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2
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],
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"transpose_backward": [
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0,
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1,
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2
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],
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"configurations": {
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"3d_fullres_ps192": {
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"data_identifier": "nnUNetResEncUNetLPlans_noResampling_3d_fullres",
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"preprocessor_name": "DefaultPreprocessor",
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"batch_size": 2,
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"patch_size": [
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192,
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192,
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192
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],
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"median_image_size_in_voxels": [
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168.0,
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239.0,
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282.0
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],
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"spacing": [
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1.5,
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1.5
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],
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"normalization_schemes": [
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"ZScoreNormalization"
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],
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"use_mask_for_norm": [
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false
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],
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"resampling_fn_data": "no_resampling_hack",
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"resampling_fn_seg": "no_resampling_hack",
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"resampling_fn_data_kwargs": {},
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"resampling_fn_seg_kwargs": {},
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"resampling_fn_probabilities": "no_resampling_hack",
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"resampling_fn_probabilities_kwargs": {},
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"architecture": {
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"network_class_name": "dynamic_network_architectures.architectures.unet.ResidualEncoderUNet",
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"arch_kwargs": {
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"n_stages": 6,
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"features_per_stage": [
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],
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"conv_op": "torch.nn.modules.conv.Conv3d",
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"kernel_sizes": [
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"strides": [
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"dropout_op": null,
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"dropout_op_kwargs": null,
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"nonlin": "torch.nn.LeakyReLU",
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"nonlin_kwargs": {
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"inplace": true
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},
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"_kw_requires_import": [
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"conv_op",
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"norm_op",
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"dropout_op",
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"nonlin"
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]
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},
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"batch_dice": false
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},
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"3d_fullres_ps192_bs16": {
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"inherits_from": "3d_fullres_ps192",
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"batch_size": 16
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},
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"3d_fullres_ps192_bs24": {
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"inherits_from": "3d_fullres_ps192",
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},
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"3d_fullres_ps192_bs2": {
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"inherits_from": "3d_fullres_ps192_bs16",
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"batch_size": 2
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},
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"3d_fullres_ps128_bs2": {
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"3d_fullres_ps384_bs16": {
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}
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},
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"experiment_planner_used": "nnUNetPlannerResEncL_noResampling",
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"label_manager": "LabelManager",
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"foreground_intensity_properties_per_channel": {
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"0": {
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"max": 4094640.0,
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"mean": 1683.86181640625,
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"median": 374.0,
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"min": -32768.0,
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"percentile_00_5": -970.0,
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"percentile_99_5": 8047.0,
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"std": 26629.310546875
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}
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}
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}
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