---
imports:
- "$import glob"
- "$import json"
- "$import os"
- "$from scripts.compute_metric import compute_abdominal_ct_metrics"
- "$from scripts.compute_metric import compute"
workflow_type: evaluate
spatial_dims: "$len(@spatial_size)"
bundle_root: "."
output_dir: "$@bundle_root + '/eval/dynunet_FT_trt_32'"
dataset_dir: "/processed/Public/CT_TotalSegmentator/TS_split/test/"
data_list_file_path: "$@bundle_root + '/configs/TS_test.json'"
datalist: "$monai.data.load_decathlon_datalist(@data_list_file_path, data_list_key='validation')"
datalist_pred: "$[{**d, 'pred': os.path.join(@output_dir, d['label'].split('/')[-1].split('.')[0] + '_trans.nii.gz')} for d in @datalist]"
run:
#- "$compute_abdominal_ct_metrics(@datalist_pred, @output_dir)"
- "$compute(@datalist_pred, @output_dir)"