{
    "imports": [
        "$import glob",
        "$import os",
        "$import scripts",
        "$import numpy as np",
        "$import copy",
        "$import json",
        "$import pathlib"
    ],
    "bundle_root": "./",
    "image_key": "image",
    "output_dir": "$@bundle_root + '/eval'",
    "output_ext": ".nii.gz",
    "output_dtype": "$np.float32",
    "output_postfix": "trans",
    "separate_folder": true,
    "input_dict": "${'image': '/data/Task09_Spleen/imagesTr/spleen_10.nii.gz', 'label_prompt': [3]}",
    "everything_labels": "$list(set([i+1 for i in range(132)]) - set([2,16,18,20,21,23,24,25,26,27,128,129,130,131,132]))",
    "metadata_path": "$@bundle_root + '/configs/metadata.json'",
    "metadata": "$json.loads(pathlib.Path(@metadata_path).read_text())",
    "labels_dict": "$@metadata['network_data_format']['outputs']['pred']['channel_def']",
    "subclass": {
        "2": [
            14,
            5
        ],
        "20": [
            28,
            29,
            30,
            31,
            32
        ],
        "21": "$list(range(33, 57)) + list(range(63, 98)) + [114, 120, 122]"
    },
    "input_channels": 1,
    "resample_spacing": [
        1.5,
        1.5,
        1.5
    ],
    "sw_batch_size": 1,
    "patch_size": [
        128,
        128,
        128
    ],
    "device": "$torch.device('cuda:0' if torch.cuda.is_available() else 'cpu')",
    "use_point_window": true,
    "network_def": "$monai.networks.nets.vista3d132(in_channels=@input_channels)",
    "network": "$@network_def.to(@device)",
    "preprocessing_transforms": [
        {
            "_target_": "LoadImaged",
            "keys": "@image_key",
            "image_only": true
        },
        {
            "_target_": "EnsureChannelFirstd",
            "keys": "@image_key"
        },
        {
            "_target_": "EnsureTyped",
            "keys": "@image_key",
            "device": "@device",
            "track_meta": true
        },
        {
            "_target_": "Spacingd",
            "keys": "@image_key",
            "pixdim": "@resample_spacing",
            "mode": "bilinear"
        },
        {
            "_target_": "CropForegroundd",
            "keys": "@image_key",
            "allow_smaller": true,
            "margin": 10,
            "source_key": "@image_key"
        },
        {
            "_target_": "monai.apps.vista3d.transforms.VistaPreTransformd",
            "keys": "@image_key",
            "subclass": "@subclass",
            "labels_dict": "@labels_dict"
        },
        {
            "_target_": "ScaleIntensityRanged",
            "keys": "@image_key",
            "a_min": -963.8247715525971,
            "a_max": 1053.678477684517,
            "b_min": 0,
            "b_max": 1,
            "clip": true
        },
        {
            "_target_": "Orientationd",
            "keys": "@image_key",
            "axcodes": "RAS"
        },
        {
            "_target_": "CastToTyped",
            "keys": "@image_key",
            "dtype": "$torch.float32"
        }
    ],
    "preprocessing": {
        "_target_": "Compose",
        "transforms": "$@preprocessing_transforms "
    },
    "dataset": {
        "_target_": "Dataset",
        "data": "$[@input_dict]",
        "transform": "@preprocessing"
    },
    "dataloader": {
        "_target_": "ThreadDataLoader",
        "dataset": "@dataset",
        "batch_size": 1,
        "shuffle": false,
        "num_workers": 0
    },
    "inferer": {
        "_target_": "scripts.inferer.Vista3dInferer",
        "roi_size": "@patch_size",
        "overlap": 0.3,
        "sw_batch_size": "@sw_batch_size",
        "use_point_window": "@use_point_window"
    },
    "postprocessing": {
        "_target_": "Compose",
        "transforms": [
            {
                "_target_": "ToDeviced",
                "keys": "pred",
                "device": "cpu",
                "_disabled_": true
            },
            {
                "_target_": "monai.apps.vista3d.transforms.VistaPostTransformd",
                "keys": "pred"
            },
            {
                "_target_": "Invertd",
                "keys": "pred",
                "transform": "$copy.deepcopy(@preprocessing)",
                "orig_keys": "@image_key",
                "nearest_interp": true,
                "to_tensor": true
            },
            {
                "_target_": "Lambdad",
                "func": "$lambda x: torch.nan_to_num(x, nan=255)",
                "keys": "pred"
            },
            {
                "_target_": "SaveImaged",
                "keys": "pred",
                "resample": false,
                "output_dir": "@output_dir",
                "output_ext": "@output_ext",
                "output_dtype": "@output_dtype",
                "output_postfix": "@output_postfix",
                "separate_folder": "@separate_folder"
            }
        ]
    },
    "handlers": [
        {
            "_target_": "StatsHandler",
            "iteration_log": false
        }
    ],
    "checkpointloader": {
        "_target_": "CheckpointLoader",
        "load_path": "$@bundle_root + '/models/model.pt'",
        "load_dict": {
            "model": "@network"
        },
        "map_location": "@device"
    },
    "evaluator": {
        "_target_": "scripts.evaluator.Vista3dEvaluator",
        "device": "@device",
        "val_data_loader": "@dataloader",
        "network": "@network",
        "inferer": "@inferer",
        "postprocessing": "@postprocessing",
        "val_handlers": "@handlers",
        "amp": true,
        "hyper_kwargs": {
            "user_prompt": true,
            "everything_labels": "@everything_labels"
        }
    },
    "initialize": [
        "$monai.utils.set_determinism(seed=123)",
        "$@checkpointloader(@evaluator)"
    ],
    "run": [
        "$@evaluator.run()"
    ]
}