Update script.py
Browse files
script.py
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import pandas as pd
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import numpy as np
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from PIL import Image
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import onnxruntime as ort
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import os
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from tqdm import tqdm
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def is_gpu_available():
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"""Check if the python package `onnxruntime-gpu` is installed."""
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return
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class
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"""Run inference using ONNX runtime."""
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def __init__(self,
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self.ort_session = ort.InferenceSession(onnx_path, providers=providers)
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new_size = (384, 384)
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return np.array(Image.fromarray(image).resize(new_size))
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def predict_image(self, image: np.ndarray) -> list():
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resized_image = self._resize_image(image)
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logits = self.ort_session.run(None, {"input": resized_image})
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return logits.tolist()
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def make_submission(test_metadata, model_path, output_csv_path="./submission.csv", images_root_path="/tmp/data/private_testset"):
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"""Make submission with given """
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model =
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predictions = []
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for _, row in tqdm(test_metadata.iterrows(), total=len(test_metadata)):
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image_path = os.path.join(images_root_path, row.
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test_image = Image.open(image_path).convert("RGB")
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test_image_resized = np.asarray(test_image.resize((384, 384)))
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logits = model.predict_image(
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predictions.append(np.argmax(logits))
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with zipfile.ZipFile("/tmp/data/private_testset.zip", 'r') as zip_ref:
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zip_ref.extractall("/tmp/data")
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metadata_file_path = "./SnakeCLEF2024-TestMetadata.csv"
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test_metadata = pd.read_csv(metadata_file_path)
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make_submission(
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test_metadata=test_metadata,
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model_path=
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import pandas as pd
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import numpy as np
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import onnxruntime as ort
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import os
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from tqdm import tqdm
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import timm
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import torchvision.transforms as T
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from PIL import Image
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import torch
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def is_gpu_available():
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"""Check if the python package `onnxruntime-gpu` is installed."""
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return torch.cuda.is_available()
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class PytorchWorker:
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"""Run inference using ONNX runtime."""
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def __init__(self, model_path: str, model_name: str, number_of_categories: int = 1604):
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def _load_model(model_name, model_path):
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print("Setting up Pytorch Model")
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self.device = torch.device("cuda:0" if torch.cuda.is_available() else "cpu")
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print(f"Using devide: {self.device}")
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model = timm.create_model(model_name, num_classes=number_of_categories, pretrained=False)
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# if not torch.cuda.is_available():
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# model_ckpt = torch.load(model_path, map_location=torch.device("cpu"))
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# else:
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# model_ckpt = torch.load(model_path)
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model_ckpt = torch.load(model_path, map_location=self.device)
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model.load_state_dict(model_ckpt)
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return model.to(self.device).eval()
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self.model = _load_model(model_name, model_path)
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self.transforms = T.Compose([T.Resize((299, 299)),
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T.ToTensor(),
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T.Normalize([0.5, 0.5, 0.5], [0.5, 0.5, 0.5])])
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def predict_image(self, image: np.ndarray) -> list():
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"""Run inference using ONNX runtime.
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:param image: Input image as numpy array.
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:return: A list with logits and confidences.
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"""
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logits = self.model(self.transforms(image).unsqueeze(0).to(self.device))
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return logits.tolist()
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def make_submission(test_metadata, model_path, model_name, output_csv_path="./submission.csv", images_root_path="/tmp/data/private_testset"):
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"""Make submission with given """
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model = PytorchWorker(model_path, model_name)
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predictions = []
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for _, row in tqdm(test_metadata.iterrows(), total=len(test_metadata)):
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image_path = os.path.join(images_root_path, row.image_path)
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test_image = Image.open(image_path).convert("RGB")
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logits = model.predict_image(test_image)
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predictions.append(np.argmax(logits))
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with zipfile.ZipFile("/tmp/data/private_testset.zip", 'r') as zip_ref:
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zip_ref.extractall("/tmp/data")
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MODEL_PATH = "pytorch_model.bin"
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MODEL_NAME = "tf_efficientnet_b1.ap_in1k"
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metadata_file_path = "./SnakeCLEF2024-TestMetadata.csv"
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test_metadata = pd.read_csv(metadata_file_path)
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make_submission(
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test_metadata=test_metadata,
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model_path=MODEL_PATH,
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model_name=MODEL_NAME
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)
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