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README.md
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host model is a Named Entity Recognition (NER) model that identifies and annotates the host (living organism) of microbiome samples in texts.
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Testing examples:
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1. Turkestan cockroach nymphs (Finke, 2013) were fed to the treefrogs at a quantity of 10% of treefrog biomass twice a week.
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host model is a Named Entity Recognition (NER) model that identifies and annotates the host (living organism) of microbiome samples in texts.
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The model is a fine-tuned BioBERT model and the training dataset is available in https://gitlab.com/maaly7/emerald_metagenomics_annotations
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Testing examples:
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1. Turkestan cockroach nymphs (Finke, 2013) were fed to the treefrogs at a quantity of 10% of treefrog biomass twice a week.
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