README.md

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license: cc-by-nc-sa-4.0

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# Model Card for hest-tissue-seg

DeepLabV3 model finetuned on HEST-1k and Acrobat for IHC/H&E tissue segmentation.

Please visit the [HEST-library](https://github.com/mahmoodlab/hest) for instructions.


### How to cite:

```
@article{jaume2024hest,
	author = {Jaume, Guillaume and Doucet, Paul and Song, Andrew H. and Lu, Ming Y. and Almagro-Perez, Cristina and Wagner, Sophia J. and Vaidya, Anurag J. and Chen, Richard J. and Williamson, Drew F. K. and Kim, Ahrong and Mahmood, Faisal},
	title = {{HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis}},
	journal = {arXiv},
	year = {2024},
	month = jun,
	eprint = {2406.16192},
	url = {https://arxiv.org/abs/2406.16192v1}
}
```

### Contact:
- <b>Guillaume Jaume</b> Harvard Medical School, Boston, Mahmood Lab (`gjaume@bwh.harvard.edu`)
- <b>Paul Doucet</b> Harvard Medical School, Boston, Mahmood Lab (`pdoucet@bwh.harvard.edu`)

<i>The dataset is distributed under the Attribution-NonCommercial-ShareAlike 4.0 International license (CC BY-NC-SA 4.0 Deed)</i>