code: complete eval pipeline (7 metrics + per-class + Wilcoxon) + Swin-UNet/TransUNet networks; remove backups/obsolete
1a18f22 verified | """FD-lever ablation on the recommended P2 base (JiT): refine p1_jit_{ds} with FD loss | |
| -> sample -> downstream. Compares +JiT-FD vs +JiT(native) vs real. 18 jobs on GPU0-5.""" | |
| import os, time, json, subprocess | |
| ROOT = "/home/wzhang/LSC/Code/NPJ" | |
| DR = "/home/wzhang/LSC/Dataset/Segmentation/processed_unified" | |
| PY = "/opt/anaconda3/envs/seggen/bin/python" | |
| GPUS = [0, 1, 2, 3, 4, 5] | |
| os.chdir(ROOT) | |
| LOGD = os.path.join(ROOT, "logs", "fdlever") | |
| os.makedirs(LOGD, exist_ok=True) | |
| def log(m): | |
| line = f"[{time.strftime('%F %T')}] {m}" | |
| open(os.path.join(LOGD, "status.md"), "a").write(line + "\n"); print(line, flush=True) | |
| DSETS = {"isic": ("medsegdb_isic2018", "holdout", 2582), "kvasir": ("kvasir_seg", "official", 800)} | |
| NS = [50, 100]; SEEDS = [0, 1, 2] | |
| jobs = {} | |
| def add(jid, cmd, deps=(), done_path=None, done_min=1): | |
| jobs[jid] = {"cmd": cmd, "deps": list(deps), "done_path": done_path, "done_min": done_min, | |
| "state": "pending", "tries": 0, "gpu": None} | |
| for dk, (ds, proto, tot) in DSETS.items(): | |
| base = f"pretrained/pixdiff/p1_jit_{dk}.pt" | |
| out = f"pretrained/pixdiff/p1_jitfd_{dk}.pt" | |
| cmd = (f"{PY} -m framework.synth.pixdiff.train_fd --base_ckpt {base} --data_root {DR} " | |
| f"--dataset {ds} --protocol {proto} --train_fraction 1.0 --epochs 150 --batch_size 16 " | |
| f"--amp bf16 --fd_weight 0.5 --out_ckpt {out} --log_interval 100") | |
| add(f"genfd_{dk}", cmd, done_path=os.path.join(ROOT, out)) | |
| for N in NS: | |
| f = N / tot | |
| sd = f"{DR}/{ds}/{proto}/synth_p1_jitfd_{dk}_f{N}" | |
| cmd = (f"{PY} -m framework.synth.pixdiff.sample --ckpt {out} --data_root {DR} --dataset {ds} " | |
| f"--protocol {proto} --train_fraction {f} --fraction_seed 0 --n_per_mask 4 --mask_aug " | |
| f"--num_steps 50 --out_dir {sd}") | |
| add(f"samp_jitfd_{dk}_N{N}", cmd, deps=[f"genfd_{dk}"], done_path=os.path.join(sd, "images"), done_min=N * 4) | |
| for S in SEEDS: | |
| exp = f"p1_jitfd_{dk}_N{N}" | |
| mp = os.path.join(ROOT, f"results/{exp}/{ds}_{proto}/unet/seed{S}/metrics.json") | |
| cmd = (f"{PY} framework/train.py --data_root {DR} --dataset {ds} --protocol {proto} --arch unet " | |
| f"--encoder resnet50 --aug standard --epochs 400 --train_fraction {f} --fraction_seed 0 " | |
| f"--synth_train_dir {sd} --exp_name {exp} --amp bf16 --seed {S} " | |
| f"&& {PY} framework/test.py --data_root {DR} --dataset {ds} --protocol {proto} --arch unet " | |
| f"--encoder resnet50 --aug standard --exp_name {exp} --seed {S}") | |
| add(f"seg_jitfd_{dk}_N{N}_s{S}", cmd, deps=[f"samp_jitfd_{dk}_N{N}"], done_path=mp) | |
| def is_done(j): | |
| p = j["done_path"] | |
| if not p or not os.path.exists(p): return False | |
| if os.path.isdir(p): | |
| try: return len(os.listdir(p)) >= j["done_min"] | |
| except OSError: return False | |
| return True | |
| def aggregate(): | |
| res = {} | |
| for dk, (ds, proto, tot) in DSETS.items(): | |
| for N in NS: | |
| exp = f"p1_jitfd_{dk}_N{N}"; ious = []; dices = [] | |
| for S in SEEDS: | |
| mp = f"results/{exp}/{ds}_{proto}/unet/seed{S}/metrics.json" | |
| if os.path.exists(mp): | |
| try: | |
| m = json.load(open(mp))["metrics"]; ious.append(m["iou_mean"]); dices.append(m["dice_mean"]) | |
| except Exception: pass | |
| if ious: | |
| res[f"{dk}_N{N}_jitfd"] = {"iou_mean": sum(ious) / len(ious), "dice_mean": sum(dices) / len(dices), | |
| "n_seeds": len(ious), "iou_seeds": ious} | |
| json.dump(res, open(os.path.join(LOGD, "fd_results.json"), "w"), indent=2) | |
| for jid, j in jobs.items(): | |
| if is_done(j): j["state"] = "done" | |
| def deps_done(j): return all(jobs[d]["state"] == "done" for d in j["deps"]) | |
| running = {}; free = set(GPUS); last = 0 | |
| log(f"START {len(jobs)} jobs on {GPUS} ({sum(1 for j in jobs.values() if j['state']=='done')} pre-done)") | |
| while True: | |
| if all(j["state"] in ("done", "failed") for j in jobs.values()): break | |
| for jid, j in jobs.items(): | |
| if not free: break | |
| if j["state"] == "pending" and deps_done(j): | |
| if is_done(j): j["state"] = "done"; continue | |
| g = free.pop() | |
| env = dict(os.environ, CUDA_DEVICE_ORDER="PCI_BUS_ID", CUDA_VISIBLE_DEVICES=str(g), | |
| TORCHDYNAMO_DISABLE="1", PYTHONPATH=".", OMP_NUM_THREADS="4") | |
| lf = open(os.path.join(LOGD, jid + ".log"), "a") | |
| p = subprocess.Popen(j["cmd"], shell=True, env=env, stdout=lf, stderr=subprocess.STDOUT, cwd=ROOT) | |
| running[g] = (jid, p, lf); j["state"] = "running"; j["gpu"] = g; j["tries"] += 1 | |
| log(f"LAUNCH {jid} GPU{g} try{j['tries']}") | |
| for g, (jid, p, lf) in list(running.items()): | |
| rc = p.poll() | |
| if rc is None: continue | |
| lf.close(); del running[g]; free.add(g); j = jobs[jid] | |
| if is_done(j): j["state"] = "done"; log(f"DONE {jid}") | |
| elif j["tries"] < 2: j["state"] = "pending"; log(f"RETRY {jid} rc={rc}") | |
| else: j["state"] = "failed"; log(f"FAILED {jid} rc={rc}") | |
| if time.time() - last > 180: | |
| cnt = {s: sum(1 for j in jobs.values() if j["state"] == s) for s in ("done", "running", "pending", "failed")} | |
| log(f"SUMMARY {cnt}"); aggregate(); last = time.time() | |
| time.sleep(10) | |
| aggregate(); log("ALL DONE"); print("FD_LEVER_DONE", flush=True) | |