GenSeg-Baselines / code /scripts /p1 /fid_and_viz.py
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code: complete eval pipeline (7 metrics + per-class + Wilcoxon) + Swin-UNet/TransUNet networks; remove backups/obsolete
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"""FID (1-2k samples) per backbone x dataset + clear same-mask aligned viz.
A) fid-sample: train_fraction=1.0, mask_aug, n_per_mask -> ~1.6-2.6k synth; FID vs real train.
B) align-sample: f50 masks, NO aug, 1/mask -> all backbones share identical real masks -> aligned grid.
Then pytorch_fid per pair + build [mask|real|4 backbones] grids. GPU0-5 pool."""
import os, time, json, re, subprocess
import numpy as np
import matplotlib; matplotlib.use("Agg")
import matplotlib.pyplot as plt
from PIL import Image
ROOT = "/home/wzhang/LSC/Code/NPJ"; DR = "/home/wzhang/LSC/Dataset/Segmentation/processed_unified"
PY = "/opt/anaconda3/envs/seggen/bin/python"; GPUS = [0, 1, 2, 3, 4, 5]
os.chdir(ROOT); LOGD = os.path.join(ROOT, "logs", "fidviz"); os.makedirs(LOGD, exist_ok=True)
def log(m):
line = f"[{time.strftime('%F %T')}] {m}"; open(os.path.join(LOGD, "status.md"), "a").write(line + "\n"); print(line, flush=True)
# (ds, proto, total, npm_for_fid)
DSETS = {"isic": ("medsegdb_isic2018", "holdout", 2582, 1),
"kvasir": ("kvasir_seg", "official", 800, 2),
"busi": ("busi", "fold01", 545, 3)}
BKS = ["jit", "pixelgen", "deco", "pixeldit"]; LAB = {"jit": "JiT", "pixelgen": "PixelGen", "deco": "DeCo", "pixeldit": "PixelDiT"}
jobs = {}
def add(jid, cmd, deps=(), done_path=None, done_min=1):
jobs[jid] = {"cmd": cmd, "deps": list(deps), "done_path": done_path, "done_min": done_min, "state": "pending", "tries": 0, "gpu": None}
for bk in BKS:
for dk, (ds, proto, tot, npm) in DSETS.items():
ck = f"pretrained/pixdiff/p1_{bk}_{dk}.pt"
fsd = f"{DR}/{ds}/{proto}/synth_fid_{bk}_{dk}"
add(f"fidsamp_{bk}_{dk}",
f"{PY} -m framework.synth.pixdiff.sample --ckpt {ck} --data_root {DR} --dataset {ds} --protocol {proto} "
f"--train_fraction 1.0 --fraction_seed 0 --n_per_mask {npm} --mask_aug --num_steps 50 --out_dir {fsd}",
done_path=os.path.join(fsd, "images"), done_min=int(0.8 * tot * npm))
real = f"{DR}/{ds}/{proto}/train/images"
flog = os.path.join(LOGD, f"fid_{bk}_{dk}.log"); fok = os.path.join(LOGD, f"fid_{bk}_{dk}.ok")
add(f"fid_{bk}_{dk}",
f"{PY} -m pytorch_fid {real} {fsd}/images --device cuda --batch-size 64 > {flog} 2>&1 && grep -q FID {flog} && touch {fok}",
deps=[f"fidsamp_{bk}_{dk}"], done_path=fok)
f50 = 50 / tot; asd = f"{DR}/{ds}/{proto}/synth_align_{bk}_{dk}"
add(f"alignsamp_{bk}_{dk}",
f"{PY} -m framework.synth.pixdiff.sample --ckpt {ck} --data_root {DR} --dataset {ds} --protocol {proto} "
f"--train_fraction {f50} --fraction_seed 0 --n_per_mask 1 --num_steps 50 --out_dir {asd}",
done_path=os.path.join(asd, "images"), done_min=40)
def is_done(j):
p = j["done_path"]
if not p or not os.path.exists(p): return False
if os.path.isdir(p):
try: return len(os.listdir(p)) >= j["done_min"]
except OSError: return False
return True
for jid, j in jobs.items():
if is_done(j): j["state"] = "done"
def deps_done(j): return all(jobs[d]["state"] == "done" for d in j["deps"])
running = {}; free = set(GPUS); last = 0
log(f"START {len(jobs)} jobs on {GPUS}")
while True:
if all(j["state"] in ("done", "failed") for j in jobs.values()): break
for jid, j in jobs.items():
if not free: break
if j["state"] == "pending" and deps_done(j):
if is_done(j): j["state"] = "done"; continue
g = free.pop()
env = dict(os.environ, CUDA_DEVICE_ORDER="PCI_BUS_ID", CUDA_VISIBLE_DEVICES=str(g), TORCHDYNAMO_DISABLE="1", PYTHONPATH=".", OMP_NUM_THREADS="4")
lf = open(os.path.join(LOGD, jid + ".log"), "a")
p = subprocess.Popen(j["cmd"], shell=True, env=env, stdout=lf, stderr=subprocess.STDOUT, cwd=ROOT)
running[g] = (jid, p, lf); j["state"] = "running"; j["gpu"] = g; j["tries"] += 1
log(f"LAUNCH {jid} GPU{g} try{j['tries']}")
for g, (jid, p, lf) in list(running.items()):
rc = p.poll()
if rc is None: continue
lf.close(); del running[g]; free.add(g); j = jobs[jid]
if is_done(j): j["state"] = "done"; log(f"DONE {jid}")
elif j["tries"] < 2: j["state"] = "pending"; log(f"RETRY {jid} rc={rc}")
else: j["state"] = "failed"; log(f"FAILED {jid} rc={rc}")
if time.time() - last > 180:
cnt = {s: sum(1 for j in jobs.values() if j["state"] == s) for s in ("done", "running", "pending", "failed")}; log(f"SUMMARY {cnt}"); last = time.time()
time.sleep(8)
# ---- parse FID ----
fid = {}
for bk in BKS:
for dk in DSETS:
lg = os.path.join(LOGD, f"fid_{bk}_{dk}.log")
if os.path.exists(lg):
m = re.findall(r"FID:\s*([0-9.]+)", open(lg).read())
if m: fid[f"{dk}_{bk}"] = float(m[-1])
json.dump(fid, open(os.path.join(LOGD, "fid_results.json"), "w"), indent=2)
log(f"FID: {fid}")
# ---- aligned grids ([mask | real | 4 backbones], same real mask per column) ----
def rgb(p): return np.asarray(Image.open(p).convert("RGB").resize((256, 256)))
def gray(p): return np.asarray(Image.open(p).convert("L").resize((256, 256)))
def fmap(d):
p = os.path.join(d, "images"); m = {}
if os.path.isdir(p):
for f in sorted(os.listdir(p)):
if f.endswith(".png"): m.setdefault(f[:-4].split("__")[0], os.path.join(p, f))
return m
for dk, (ds, proto, tot, npm) in DSETS.items():
base = f"{DR}/{ds}/{proto}"; ri, rm = f"{base}/train/images", f"{base}/train/masks"
maps = {bk: fmap(f"{base}/synth_align_{bk}_{dk}") for bk in BKS}
common = set(os.path.splitext(f)[0] for f in os.listdir(ri) if f.endswith(".png"))
for bk in BKS: common &= set(maps[bk].keys())
common = sorted(common); ncol = min(6, len(common))
if ncol == 0: continue
idx = [round(i * (len(common) - 1) / (ncol - 1)) for i in range(ncol)] if ncol > 1 else [0]
cases = [common[i] for i in idx]
rows = [("Conditioning mask", "mask"), ("Real image", "real")] + [(LAB[bk], bk) for bk in BKS]
fig, ax = plt.subplots(len(rows), ncol, figsize=(ncol * 1.9, len(rows) * 1.95))
for r, (labr, kind) in enumerate(rows):
for c, bs in enumerate(cases):
a = ax[r][c]
try:
mk = gray(f"{rm}/{bs}.png")
if kind == "mask":
a.imshow(mk, cmap="gray")
elif kind == "real":
a.imshow(rgb(f"{ri}/{bs}.png")); a.contour((mk > 127).astype(float), levels=[0.5], colors=["#19f04b"], linewidths=1.0)
else:
a.imshow(rgb(maps[kind][bs])); a.contour((mk > 127).astype(float), levels=[0.5], colors=["#19f04b"], linewidths=1.0)
except Exception:
a.imshow(np.ones((256, 256, 3))); a.text(0.5, 0.5, "n/a", ha="center", va="center", transform=a.transAxes, fontsize=8)
a.set_xticks([]); a.set_yticks([])
for s in a.spines.values(): s.set_visible(False)
if c == 0: a.set_ylabel(labr, fontsize=10, rotation=90, va="center", labelpad=8, color=("#111" if r < 2 else "#1a3b8b"))
fig.suptitle(f"{dk.upper()} — same-mask aligned: every backbone generates the SAME real mask (row 1)\n"
f"Row2=real image; rows 3-6=each backbone's mask-conditioned synthesis (green=that mask). Proves mask guidance.", fontsize=10)
plt.tight_layout(rect=[0.02, 0, 1, 0.94]); plt.savefig(f"/tmp/p1_aligned_{dk}.png", dpi=145, bbox_inches="tight", facecolor="white")
log(f"aligned grid saved /tmp/p1_aligned_{dk}.png")
log("ALL DONE"); print("FIDVIZ_DONE", flush=True)