File size: 31,391 Bytes
f62ab3b |
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 |
---
language:
- en
license: apache-2.0
tags:
- sentence-transformers
- sentence-similarity
- feature-extraction
- generated_from_trainer
- dataset_size:1567
- loss:MatryoshkaLoss
- loss:MultipleNegativesRankingLoss
base_model: nomic-ai/modernbert-embed-base
widget:
- source_sentence: How many authors are listed for the trial?
sentences:
- 'chemotherapy and bone marrow transplantation for certain malignancies and has
a long track
record of safe use in adults and children. The incidence of adverse events such
as fever, chills,
bone pain, dyspnea, tachycardia, and hemodynamic instability was no different
between GM-
CSF and placebo-treated groups in controlled adult BMT studies. Rapid IV administration
of'
- 'clinical ICU staff in accordance with institutional practice and judgment.
Child Assent Subjects who are eligible for this study will be critically ill,
and child assent is
typically not possible at the time of study enrollment. However, during follow
up after discharge
from the ICU, issues about assent become applicable. Children who are capable
of giving assent'
- 'Controlled Phase 2 Trial. Stroke, 49(5):1210–1216, 2018.
[76] M. K. R. Somagutta, M. K. Lourdes Pormento, P. Hamid, A. Hamdan, M. A. Khan,
R. Desir, R. Vijayan, S. Shirke, R. Jeyakumar, Z. Dogar, S. S. Makkar, P. Guntipalli,
N. N. Ngardig, M. S. Nagineni, T. Paul, E. Luvsannyam, C. Riddick, and M. A. Sanchez-'
- source_sentence: What type of event can lead to the suspension of enrollment in
the study?
sentences:
- 'and data generated by this study must be available for inspection upon request
by representatives
(when applicable) of the Food and Drug Administration (FDA), NIH, other Federal
funders or
study sponsors, and the Institutional Review Board (IRB) for each study site.
9 Protection of Human Subjects
9.1 Risks to Human Subjects
9.1.1 Human Subjects Involvement and Characteristics'
- 'two consecutive days while receiving study drug, the drug will be discontinued.
Adverse events will be monitored as described in Section 10.2.6 on page 61. The
medical
monitor has the authority to suspend enrollment in the event of an unexpected,
study-related
serious adverse event that is judged to change the risk/benefit of subject participation.'
- 'innate immune system is common and measurable in pediatric sepsis. Innate immune
cells such
as monocytes and neutrophils serve critical functions including migration to sites
of infection,
phagocytosis of pathogens, promotion of microbial killing, antigen presentation,
and production
of immunomodulatory cytokines. We have repeatedly shown that severe reduction
in the ability'
- source_sentence: When will the reviews start?
sentences:
- 'mg/kg/day given for three days by continuous infusion was used.23, 63 Despite
its apparent safety
in adults, this dose is substantially higher than what has been used in children
with HLH/MAS
or adults with COVID-19.
In the largest (to date) published study of anakinra in hospitalized, hyper-inflamed
adults
with COVID-19 (N=392), a dose of 10 mg/kg/day IV divided every 12 hours (infused
over 1'
- 'data are required for Federal reporting purposes to delineate subject accrual
by race, ethnicity,
and gender.
For purposes of the DCC handling potential protected health information (PHI)
and pro-
ducing the de–identified research data sets that will be used for analyses, all
study sites have
been offered a Business Associate Agreement with the University of Utah. Copies
of executed'
- 'empirically whether these patients differ from those remaining in the study for
the scheduled
treatment and follow-up time. Missingness for primary, secondary, exploratory,
and safety
outcomes will be reviewed in aggregate and by site. Reviews will start as soon
as enrollment
opens and will be regulatory monitored so missing data problems can be addressed
early in the
study.'
- source_sentence: What type of results will be communicated to the Data Coordinating
Center and clinical site investigator?
sentences:
- 'ing of a medical condition that was present at the time of randomization will
be considered a
new adverse event and reported.
After patient randomization all adverse events (including serious adverse events)
will be
recorded according to relatedness, severity, and expectedness, as well as their
duration and'
- '12.2 Health Insurance Portability and Accountability Act
Data elements collected include the date of birth and date of admission. Prior
to statistical
analyses, dates will be used to calculate patient age at the time of the study
events.
Data elements for race, ethnicity, and gender are also being collected. These
demographic'
- 'The Collaborative Pediatric Critical Care Research NetworkPage 34 of 76 Protocol
90 (Hall, Zuppa and Mourani)
4.5 Randomization
Upon determination of a subject’s immunophenotype, Dr. Hall or his designee will
notify the
Data Coordinating Center and the clinical site investigator of the laboratory
results. Subjects'
- source_sentence: What age groups will be enrolled in the study?
sentences:
- 'have mild to moderate inflammation (i.e. a serum ferritin level <2,000 ng/ml)
from the TRIPS
trial. Those subjects will be instead entered into a completely distinct clinical
trial of immune
stimulation with GM-CSF (GRACE-2) that is covered by a separate IND (#112277).
PRECISE Protocol Version 1.07
Protocol Version Date: June 16, 2023'
- 'Subject Population to be Studied Participating sites will enroll infants, children
and adoles-
cent patients who are admitted to a Pediatric or Cardiac Intensive Care Unit with
sepsis-induced
multiple organ dysfunction syndrome (MODS). The goal is to determine if personalized
im-
munomodulation is an effective strategy to reduce mortality and morbidity from
sepsis-induced'
- 'Loosdregt, N. M. Wulffraat, S. de Roock, and S. J. Vastert. Treatment to target
using
recombinant interleukin-1 receptor antagonist as first-line monotherapy in new-onset
systemic juvenile idiopathic arthritis: Results from a five-year follow-up study.
Arthritis
Rheumatol, 71(7):1163–1173, 2019.
[78] R. K. Thakkar, R. Devine, J. Popelka, J. Hensley, R. Fabia, J. A. Muszynski,
and M. W.'
pipeline_tag: sentence-similarity
library_name: sentence-transformers
metrics:
- cosine_accuracy@1
- cosine_accuracy@3
- cosine_accuracy@5
- cosine_accuracy@10
- cosine_precision@1
- cosine_precision@3
- cosine_precision@5
- cosine_precision@10
- cosine_recall@1
- cosine_recall@3
- cosine_recall@5
- cosine_recall@10
- cosine_ndcg@10
- cosine_mrr@10
- cosine_map@100
model-index:
- name: Fine-tuned with [QuicKB](https://github.com/ALucek/QuicKB)
results:
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 768
type: dim_768
metrics:
- type: cosine_accuracy@1
value: 0.5714285714285714
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.7828571428571428
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.8114285714285714
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.8742857142857143
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.5714285714285714
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.2609523809523809
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.16228571428571423
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.08742857142857141
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.5714285714285714
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.7828571428571428
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.8114285714285714
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.8742857142857143
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.7304617900805063
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.6836485260770975
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.6898282619821292
name: Cosine Map@100
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 512
type: dim_512
metrics:
- type: cosine_accuracy@1
value: 0.5485714285714286
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.7885714285714286
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.8285714285714286
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.8685714285714285
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.5485714285714286
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.2628571428571428
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.16571428571428568
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.08685714285714283
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.5485714285714286
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.7885714285714286
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.8285714285714286
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.8685714285714285
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.7172419802927883
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.6675759637188208
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.6741729815259775
name: Cosine Map@100
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 256
type: dim_256
metrics:
- type: cosine_accuracy@1
value: 0.5485714285714286
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.76
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.84
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.9085714285714286
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.5485714285714286
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.2533333333333333
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.16799999999999995
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.09085714285714283
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.5485714285714286
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.76
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.84
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.9085714285714286
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.7268936400245406
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.6687596371882085
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.6719911574054431
name: Cosine Map@100
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 128
type: dim_128
metrics:
- type: cosine_accuracy@1
value: 0.49142857142857144
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.7028571428571428
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.7885714285714286
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.8685714285714285
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.49142857142857144
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.23428571428571424
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.15771428571428567
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.08685714285714284
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.49142857142857144
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.7028571428571428
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.7885714285714286
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.8685714285714285
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.6778419592624233
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.6168730158730158
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.6219971103464577
name: Cosine Map@100
- task:
type: information-retrieval
name: Information Retrieval
dataset:
name: dim 64
type: dim_64
metrics:
- type: cosine_accuracy@1
value: 0.38285714285714284
name: Cosine Accuracy@1
- type: cosine_accuracy@3
value: 0.5714285714285714
name: Cosine Accuracy@3
- type: cosine_accuracy@5
value: 0.6571428571428571
name: Cosine Accuracy@5
- type: cosine_accuracy@10
value: 0.7885714285714286
name: Cosine Accuracy@10
- type: cosine_precision@1
value: 0.38285714285714284
name: Cosine Precision@1
- type: cosine_precision@3
value: 0.19047619047619044
name: Cosine Precision@3
- type: cosine_precision@5
value: 0.1314285714285714
name: Cosine Precision@5
- type: cosine_precision@10
value: 0.07885714285714283
name: Cosine Precision@10
- type: cosine_recall@1
value: 0.38285714285714284
name: Cosine Recall@1
- type: cosine_recall@3
value: 0.5714285714285714
name: Cosine Recall@3
- type: cosine_recall@5
value: 0.6571428571428571
name: Cosine Recall@5
- type: cosine_recall@10
value: 0.7885714285714286
name: Cosine Recall@10
- type: cosine_ndcg@10
value: 0.5697625172066919
name: Cosine Ndcg@10
- type: cosine_mrr@10
value: 0.5015079365079367
name: Cosine Mrr@10
- type: cosine_map@100
value: 0.5090522718083348
name: Cosine Map@100
---
# Fine-tuned with [QuicKB](https://github.com/ALucek/QuicKB)
This is a [sentence-transformers](https://www.SBERT.net) model finetuned from [nomic-ai/modernbert-embed-base](https://huggingface.co/nomic-ai/modernbert-embed-base). It maps sentences & paragraphs to a 768-dimensional dense vector space and can be used for semantic textual similarity, semantic search, paraphrase mining, text classification, clustering, and more.
## Model Details
### Model Description
- **Model Type:** Sentence Transformer
- **Base model:** [nomic-ai/modernbert-embed-base](https://huggingface.co/nomic-ai/modernbert-embed-base) <!-- at revision d556a88e332558790b210f7bdbe87da2fa94a8d8 -->
- **Maximum Sequence Length:** 1024 tokens
- **Output Dimensionality:** 768 dimensions
- **Similarity Function:** Cosine Similarity
<!-- - **Training Dataset:** Unknown -->
- **Language:** en
- **License:** apache-2.0
### Model Sources
- **Documentation:** [Sentence Transformers Documentation](https://sbert.net)
- **Repository:** [Sentence Transformers on GitHub](https://github.com/UKPLab/sentence-transformers)
- **Hugging Face:** [Sentence Transformers on Hugging Face](https://huggingface.co/models?library=sentence-transformers)
### Full Model Architecture
```
SentenceTransformer(
(0): Transformer({'max_seq_length': 1024, 'do_lower_case': False}) with Transformer model: ModernBertModel
(1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False, 'pooling_mode_weightedmean_tokens': False, 'pooling_mode_lasttoken': False, 'include_prompt': True})
(2): Normalize()
)
```
## Usage
### Direct Usage (Sentence Transformers)
First install the Sentence Transformers library:
```bash
pip install -U sentence-transformers
```
Then you can load this model and run inference.
```python
from sentence_transformers import SentenceTransformer
# Download from the 🤗 Hub
model = SentenceTransformer("Mdean77/modernbert-embed-quickb")
# Run inference
sentences = [
'What age groups will be enrolled in the study?',
'Subject Population to be Studied Participating sites will enroll infants, children and adoles-\ncent patients who are admitted to a Pediatric or Cardiac Intensive Care Unit with sepsis-induced\nmultiple organ dysfunction syndrome (MODS). The goal is to determine if personalized im-\nmunomodulation is an effective strategy to reduce mortality and morbidity from sepsis-induced',
'have mild to moderate inflammation (i.e. a serum ferritin level <2,000 ng/ml) from the TRIPS\ntrial. Those subjects will be instead entered into a completely distinct clinical trial of immune\nstimulation with GM-CSF (GRACE-2) that is covered by a separate IND (#112277).\nPRECISE Protocol Version 1.07\nProtocol Version Date: June 16, 2023',
]
embeddings = model.encode(sentences)
print(embeddings.shape)
# [3, 768]
# Get the similarity scores for the embeddings
similarities = model.similarity(embeddings, embeddings)
print(similarities.shape)
# [3, 3]
```
<!--
### Direct Usage (Transformers)
<details><summary>Click to see the direct usage in Transformers</summary>
</details>
-->
<!--
### Downstream Usage (Sentence Transformers)
You can finetune this model on your own dataset.
<details><summary>Click to expand</summary>
</details>
-->
<!--
### Out-of-Scope Use
*List how the model may foreseeably be misused and address what users ought not to do with the model.*
-->
## Evaluation
### Metrics
#### Information Retrieval
* Datasets: `dim_768`, `dim_512`, `dim_256`, `dim_128` and `dim_64`
* Evaluated with [<code>InformationRetrievalEvaluator</code>](https://sbert.net/docs/package_reference/sentence_transformer/evaluation.html#sentence_transformers.evaluation.InformationRetrievalEvaluator)
| Metric | dim_768 | dim_512 | dim_256 | dim_128 | dim_64 |
|:--------------------|:-----------|:-----------|:-----------|:-----------|:-----------|
| cosine_accuracy@1 | 0.5714 | 0.5486 | 0.5486 | 0.4914 | 0.3829 |
| cosine_accuracy@3 | 0.7829 | 0.7886 | 0.76 | 0.7029 | 0.5714 |
| cosine_accuracy@5 | 0.8114 | 0.8286 | 0.84 | 0.7886 | 0.6571 |
| cosine_accuracy@10 | 0.8743 | 0.8686 | 0.9086 | 0.8686 | 0.7886 |
| cosine_precision@1 | 0.5714 | 0.5486 | 0.5486 | 0.4914 | 0.3829 |
| cosine_precision@3 | 0.261 | 0.2629 | 0.2533 | 0.2343 | 0.1905 |
| cosine_precision@5 | 0.1623 | 0.1657 | 0.168 | 0.1577 | 0.1314 |
| cosine_precision@10 | 0.0874 | 0.0869 | 0.0909 | 0.0869 | 0.0789 |
| cosine_recall@1 | 0.5714 | 0.5486 | 0.5486 | 0.4914 | 0.3829 |
| cosine_recall@3 | 0.7829 | 0.7886 | 0.76 | 0.7029 | 0.5714 |
| cosine_recall@5 | 0.8114 | 0.8286 | 0.84 | 0.7886 | 0.6571 |
| cosine_recall@10 | 0.8743 | 0.8686 | 0.9086 | 0.8686 | 0.7886 |
| **cosine_ndcg@10** | **0.7305** | **0.7172** | **0.7269** | **0.6778** | **0.5698** |
| cosine_mrr@10 | 0.6836 | 0.6676 | 0.6688 | 0.6169 | 0.5015 |
| cosine_map@100 | 0.6898 | 0.6742 | 0.672 | 0.622 | 0.5091 |
<!--
## Bias, Risks and Limitations
*What are the known or foreseeable issues stemming from this model? You could also flag here known failure cases or weaknesses of the model.*
-->
<!--
### Recommendations
*What are recommendations with respect to the foreseeable issues? For example, filtering explicit content.*
-->
## Training Details
### Training Dataset
#### Unnamed Dataset
* Size: 1,567 training samples
* Columns: <code>anchor</code> and <code>positive</code>
* Approximate statistics based on the first 1000 samples:
| | anchor | positive |
|:--------|:----------------------------------------------------------------------------------|:------------------------------------------------------------------------------------|
| type | string | string |
| details | <ul><li>min: 8 tokens</li><li>mean: 15.03 tokens</li><li>max: 30 tokens</li></ul> | <ul><li>min: 57 tokens</li><li>mean: 90.85 tokens</li><li>max: 185 tokens</li></ul> |
* Samples:
| anchor | positive |
|:-----------------------------------------------------------------------------|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|
| <code>How many terabytes of data are referenced?</code> | <code>over 125 terabytes of data.<br>Information systems are available 24/7/365 unless a scheduled maintenance period or<br>mitigation of an unexpected event is required. Critical systems availability has exceeded 99.9%<br>for the past 5 years.<br>7.2.3 Security, Support, Encryption, and Confidentiality<br>The data center coordinates the network infrastructure and security with University Information</code> |
| <code>What regulation allows single parent permission for the study?</code> | <code>for their child in the study. Single parent permission is permitted under 45 CFR §46.405. The<br>parent or legal guardian will be informed about the objectives of the study and the potential<br>risks and benefits of their child’s participation. If the parent or legal guardian refuses permission<br>for their child to participate, then all clinical management will continue to be provided by the</code> |
| <code>What is included in the follow-up plan for non-compliant sites?</code> | <code>planned site visits, criteria for focused visits, additional visits or remote monitoring, a plan for<br>chart review and a follow up plan for non-compliant sites. The monitoring plan also describes<br>the type of monitoring that will take place (e.g., sample of all subjects within a site; key data or<br>all data), the schedule of visits, how they are reported and a time frame to resolve any issues<br>found.</code> |
* Loss: [<code>MatryoshkaLoss</code>](https://sbert.net/docs/package_reference/sentence_transformer/losses.html#matryoshkaloss) with these parameters:
```json
{
"loss": "MultipleNegativesRankingLoss",
"matryoshka_dims": [
768,
512,
256,
128,
64
],
"matryoshka_weights": [
1,
1,
1,
1,
1
],
"n_dims_per_step": -1
}
```
### Training Hyperparameters
#### Non-Default Hyperparameters
- `eval_strategy`: epoch
- `per_device_train_batch_size`: 16
- `gradient_accumulation_steps`: 16
- `learning_rate`: 2e-05
- `num_train_epochs`: 4
- `lr_scheduler_type`: cosine
- `warmup_ratio`: 0.1
- `tf32`: False
- `load_best_model_at_end`: True
- `batch_sampler`: no_duplicates
#### All Hyperparameters
<details><summary>Click to expand</summary>
- `overwrite_output_dir`: False
- `do_predict`: False
- `eval_strategy`: epoch
- `prediction_loss_only`: True
- `per_device_train_batch_size`: 16
- `per_device_eval_batch_size`: 8
- `per_gpu_train_batch_size`: None
- `per_gpu_eval_batch_size`: None
- `gradient_accumulation_steps`: 16
- `eval_accumulation_steps`: None
- `torch_empty_cache_steps`: None
- `learning_rate`: 2e-05
- `weight_decay`: 0.0
- `adam_beta1`: 0.9
- `adam_beta2`: 0.999
- `adam_epsilon`: 1e-08
- `max_grad_norm`: 1.0
- `num_train_epochs`: 4
- `max_steps`: -1
- `lr_scheduler_type`: cosine
- `lr_scheduler_kwargs`: {}
- `warmup_ratio`: 0.1
- `warmup_steps`: 0
- `log_level`: passive
- `log_level_replica`: warning
- `log_on_each_node`: True
- `logging_nan_inf_filter`: True
- `save_safetensors`: True
- `save_on_each_node`: False
- `save_only_model`: False
- `restore_callback_states_from_checkpoint`: False
- `no_cuda`: False
- `use_cpu`: False
- `use_mps_device`: False
- `seed`: 42
- `data_seed`: None
- `jit_mode_eval`: False
- `use_ipex`: False
- `bf16`: False
- `fp16`: False
- `fp16_opt_level`: O1
- `half_precision_backend`: auto
- `bf16_full_eval`: False
- `fp16_full_eval`: False
- `tf32`: False
- `local_rank`: 0
- `ddp_backend`: None
- `tpu_num_cores`: None
- `tpu_metrics_debug`: False
- `debug`: []
- `dataloader_drop_last`: False
- `dataloader_num_workers`: 0
- `dataloader_prefetch_factor`: None
- `past_index`: -1
- `disable_tqdm`: False
- `remove_unused_columns`: True
- `label_names`: None
- `load_best_model_at_end`: True
- `ignore_data_skip`: False
- `fsdp`: []
- `fsdp_min_num_params`: 0
- `fsdp_config`: {'min_num_params': 0, 'xla': False, 'xla_fsdp_v2': False, 'xla_fsdp_grad_ckpt': False}
- `fsdp_transformer_layer_cls_to_wrap`: None
- `accelerator_config`: {'split_batches': False, 'dispatch_batches': None, 'even_batches': True, 'use_seedable_sampler': True, 'non_blocking': False, 'gradient_accumulation_kwargs': None}
- `deepspeed`: None
- `label_smoothing_factor`: 0.0
- `optim`: adamw_torch
- `optim_args`: None
- `adafactor`: False
- `group_by_length`: False
- `length_column_name`: length
- `ddp_find_unused_parameters`: None
- `ddp_bucket_cap_mb`: None
- `ddp_broadcast_buffers`: False
- `dataloader_pin_memory`: True
- `dataloader_persistent_workers`: False
- `skip_memory_metrics`: True
- `use_legacy_prediction_loop`: False
- `push_to_hub`: False
- `resume_from_checkpoint`: None
- `hub_model_id`: None
- `hub_strategy`: every_save
- `hub_private_repo`: None
- `hub_always_push`: False
- `gradient_checkpointing`: False
- `gradient_checkpointing_kwargs`: None
- `include_inputs_for_metrics`: False
- `include_for_metrics`: []
- `eval_do_concat_batches`: True
- `fp16_backend`: auto
- `push_to_hub_model_id`: None
- `push_to_hub_organization`: None
- `mp_parameters`:
- `auto_find_batch_size`: False
- `full_determinism`: False
- `torchdynamo`: None
- `ray_scope`: last
- `ddp_timeout`: 1800
- `torch_compile`: False
- `torch_compile_backend`: None
- `torch_compile_mode`: None
- `dispatch_batches`: None
- `split_batches`: None
- `include_tokens_per_second`: False
- `include_num_input_tokens_seen`: False
- `neftune_noise_alpha`: None
- `optim_target_modules`: None
- `batch_eval_metrics`: False
- `eval_on_start`: False
- `use_liger_kernel`: False
- `eval_use_gather_object`: False
- `average_tokens_across_devices`: False
- `prompts`: None
- `batch_sampler`: no_duplicates
- `multi_dataset_batch_sampler`: proportional
</details>
### Training Logs
| Epoch | Step | Training Loss | dim_768_cosine_ndcg@10 | dim_512_cosine_ndcg@10 | dim_256_cosine_ndcg@10 | dim_128_cosine_ndcg@10 | dim_64_cosine_ndcg@10 |
|:----------:|:------:|:-------------:|:----------------------:|:----------------------:|:----------------------:|:----------------------:|:---------------------:|
| 1.0 | 7 | - | 0.6698 | 0.6606 | 0.6458 | 0.6146 | 0.5049 |
| 1.4898 | 10 | 55.7211 | - | - | - | - | - |
| 2.0 | 14 | - | 0.7210 | 0.7080 | 0.7183 | 0.6653 | 0.5621 |
| 2.9796 | 20 | 26.9161 | - | - | - | - | - |
| 3.0 | 21 | - | 0.7309 | 0.7172 | 0.7262 | 0.6762 | 0.5694 |
| **3.4898** | **24** | **-** | **0.7305** | **0.7172** | **0.7269** | **0.6778** | **0.5698** |
* The bold row denotes the saved checkpoint.
### Framework Versions
- Python: 3.12.3
- Sentence Transformers: 3.4.1
- Transformers: 4.49.0
- PyTorch: 2.6.0
- Accelerate: 1.4.0
- Datasets: 3.3.2
- Tokenizers: 0.21.0
## Citation
### BibTeX
#### Sentence Transformers
```bibtex
@inproceedings{reimers-2019-sentence-bert,
title = "Sentence-BERT: Sentence Embeddings using Siamese BERT-Networks",
author = "Reimers, Nils and Gurevych, Iryna",
booktitle = "Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing",
month = "11",
year = "2019",
publisher = "Association for Computational Linguistics",
url = "https://arxiv.org/abs/1908.10084",
}
```
#### MatryoshkaLoss
```bibtex
@misc{kusupati2024matryoshka,
title={Matryoshka Representation Learning},
author={Aditya Kusupati and Gantavya Bhatt and Aniket Rege and Matthew Wallingford and Aditya Sinha and Vivek Ramanujan and William Howard-Snyder and Kaifeng Chen and Sham Kakade and Prateek Jain and Ali Farhadi},
year={2024},
eprint={2205.13147},
archivePrefix={arXiv},
primaryClass={cs.LG}
}
```
#### MultipleNegativesRankingLoss
```bibtex
@misc{henderson2017efficient,
title={Efficient Natural Language Response Suggestion for Smart Reply},
author={Matthew Henderson and Rami Al-Rfou and Brian Strope and Yun-hsuan Sung and Laszlo Lukacs and Ruiqi Guo and Sanjiv Kumar and Balint Miklos and Ray Kurzweil},
year={2017},
eprint={1705.00652},
archivePrefix={arXiv},
primaryClass={cs.CL}
}
```
<!--
## Glossary
*Clearly define terms in order to be accessible across audiences.*
-->
<!--
## Model Card Authors
*Lists the people who create the model card, providing recognition and accountability for the detailed work that goes into its construction.*
-->
<!--
## Model Card Contact
*Provides a way for people who have updates to the Model Card, suggestions, or questions, to contact the Model Card authors.*
--> |