Transformers
PyTorch
t5
text2text-generation
protein-generation
sequence-generation
conditional-generation
text-generation-inference
Instructions to use MoMA-LAAS/prop2seq-model with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- Transformers
How to use MoMA-LAAS/prop2seq-model with Transformers:
# Load model directly from transformers import AutoTokenizer, AutoModelForSeq2SeqLM tokenizer = AutoTokenizer.from_pretrained("MoMA-LAAS/prop2seq-model") model = AutoModelForSeq2SeqLM.from_pretrained("MoMA-LAAS/prop2seq-model") - Notebooks
- Google Colab
- Kaggle
Upload folder using huggingface_hub
Browse files- config.json +29 -0
- feature_proj.pt +3 -0
- feature_stats.json +36 -0
- generation_config.json +7 -0
- pytorch_model.bin +3 -0
- special_tokens_map.json +5 -0
- tokenizer.json +69 -0
- tokenizer_config.json +34 -0
config.json
ADDED
|
@@ -0,0 +1,29 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"architectures": [
|
| 3 |
+
"T5ForConditionalGeneration"
|
| 4 |
+
],
|
| 5 |
+
"classifier_dropout": 0.0,
|
| 6 |
+
"d_ff": 3072,
|
| 7 |
+
"d_kv": 64,
|
| 8 |
+
"d_model": 1024,
|
| 9 |
+
"decoder_start_token_id": 0,
|
| 10 |
+
"dense_act_fn": "relu",
|
| 11 |
+
"dropout_rate": 0.1,
|
| 12 |
+
"eos_token_id": 1,
|
| 13 |
+
"feed_forward_proj": "relu",
|
| 14 |
+
"initializer_factor": 1.0,
|
| 15 |
+
"is_encoder_decoder": true,
|
| 16 |
+
"is_gated_act": false,
|
| 17 |
+
"layer_norm_epsilon": 1e-06,
|
| 18 |
+
"model_type": "t5",
|
| 19 |
+
"num_decoder_layers": 8,
|
| 20 |
+
"num_heads": 16,
|
| 21 |
+
"num_layers": 8,
|
| 22 |
+
"pad_token_id": 0,
|
| 23 |
+
"relative_attention_max_distance": 128,
|
| 24 |
+
"relative_attention_num_buckets": 32,
|
| 25 |
+
"torch_dtype": "float32",
|
| 26 |
+
"transformers_version": "4.43.4",
|
| 27 |
+
"use_cache": false,
|
| 28 |
+
"vocab_size": 23
|
| 29 |
+
}
|
feature_proj.pt
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:1d3a595fde72cb1540803fde26d04f7f3cfa714a7200b7fa8575c55d50adc15d
|
| 3 |
+
size 194344
|
feature_stats.json
ADDED
|
@@ -0,0 +1,36 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"mean": {
|
| 3 |
+
"Rg": 14.92135140993968,
|
| 4 |
+
"ete": 36.51412726240827,
|
| 5 |
+
"scaling_exponent": 0.5339325049079684,
|
| 6 |
+
"asphericity": 0.4559565227880063,
|
| 7 |
+
"prefactor": 6.1388136438092085,
|
| 8 |
+
"SHD": 2.5293296323763963,
|
| 9 |
+
"FCR": 0.24488553975833108,
|
| 10 |
+
"KL_hydropathy": -0.48035638511997825,
|
| 11 |
+
"kappa*": -0.4252169368049604,
|
| 12 |
+
"omega*": 0.0754381675942535,
|
| 13 |
+
"SCD": 0.21557541074810355,
|
| 14 |
+
"Length": 33.53519297326951,
|
| 15 |
+
"Fract_pos": 0.12313853392284548,
|
| 16 |
+
"Fract_neg": 0.12174700583548557,
|
| 17 |
+
"NCPR": 0.001391528087359907
|
| 18 |
+
},
|
| 19 |
+
"std": {
|
| 20 |
+
"Rg": 6.614851573439867,
|
| 21 |
+
"ete": 15.422660980400911,
|
| 22 |
+
"scaling_exponent": 0.0535883014001273,
|
| 23 |
+
"asphericity": 0.03324832067125699,
|
| 24 |
+
"prefactor": 0.6254380024980856,
|
| 25 |
+
"SHD": 0.7088175174516826,
|
| 26 |
+
"FCR": 0.10873439661879275,
|
| 27 |
+
"KL_hydropathy": 0.810189166439004,
|
| 28 |
+
"kappa*": 1.157971124069066,
|
| 29 |
+
"omega*": 0.6659491393910585,
|
| 30 |
+
"SCD": 1.5063322615485712,
|
| 31 |
+
"Length": 26.25489301310707,
|
| 32 |
+
"Fract_pos": 0.08248835096056287,
|
| 33 |
+
"Fract_neg": 0.0898743042163313,
|
| 34 |
+
"NCPR": 0.13394128637978803
|
| 35 |
+
}
|
| 36 |
+
}
|
generation_config.json
ADDED
|
@@ -0,0 +1,7 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"_from_model_config": true,
|
| 3 |
+
"decoder_start_token_id": 0,
|
| 4 |
+
"eos_token_id": 1,
|
| 5 |
+
"pad_token_id": 0,
|
| 6 |
+
"transformers_version": "4.43.4"
|
| 7 |
+
}
|
pytorch_model.bin
ADDED
|
@@ -0,0 +1,3 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
version https://git-lfs.github.com/spec/v1
|
| 2 |
+
oid sha256:f12d0ce47b1fce70d279362b2cda983141b185e4c2069e8a59d2c259e7cb33ed
|
| 3 |
+
size 805636798
|
special_tokens_map.json
ADDED
|
@@ -0,0 +1,5 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"eos_token": "<eos>",
|
| 3 |
+
"pad_token": "<pad>",
|
| 4 |
+
"unk_token": "<unk>"
|
| 5 |
+
}
|
tokenizer.json
ADDED
|
@@ -0,0 +1,69 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"version": "1.0",
|
| 3 |
+
"truncation": null,
|
| 4 |
+
"padding": null,
|
| 5 |
+
"added_tokens": [
|
| 6 |
+
{
|
| 7 |
+
"id": 0,
|
| 8 |
+
"content": "<pad>",
|
| 9 |
+
"single_word": false,
|
| 10 |
+
"lstrip": false,
|
| 11 |
+
"rstrip": false,
|
| 12 |
+
"normalized": false,
|
| 13 |
+
"special": true
|
| 14 |
+
},
|
| 15 |
+
{
|
| 16 |
+
"id": 1,
|
| 17 |
+
"content": "<eos>",
|
| 18 |
+
"single_word": false,
|
| 19 |
+
"lstrip": false,
|
| 20 |
+
"rstrip": false,
|
| 21 |
+
"normalized": false,
|
| 22 |
+
"special": true
|
| 23 |
+
},
|
| 24 |
+
{
|
| 25 |
+
"id": 2,
|
| 26 |
+
"content": "<unk>",
|
| 27 |
+
"single_word": false,
|
| 28 |
+
"lstrip": false,
|
| 29 |
+
"rstrip": false,
|
| 30 |
+
"normalized": false,
|
| 31 |
+
"special": true
|
| 32 |
+
}
|
| 33 |
+
],
|
| 34 |
+
"normalizer": null,
|
| 35 |
+
"pre_tokenizer": {
|
| 36 |
+
"type": "WhitespaceSplit"
|
| 37 |
+
},
|
| 38 |
+
"post_processor": null,
|
| 39 |
+
"decoder": null,
|
| 40 |
+
"model": {
|
| 41 |
+
"type": "WordLevel",
|
| 42 |
+
"vocab": {
|
| 43 |
+
"<pad>": 0,
|
| 44 |
+
"<eos>": 1,
|
| 45 |
+
"<unk>": 2,
|
| 46 |
+
"A": 3,
|
| 47 |
+
"C": 4,
|
| 48 |
+
"D": 5,
|
| 49 |
+
"E": 6,
|
| 50 |
+
"F": 7,
|
| 51 |
+
"G": 8,
|
| 52 |
+
"H": 9,
|
| 53 |
+
"I": 10,
|
| 54 |
+
"K": 11,
|
| 55 |
+
"L": 12,
|
| 56 |
+
"M": 13,
|
| 57 |
+
"N": 14,
|
| 58 |
+
"P": 15,
|
| 59 |
+
"Q": 16,
|
| 60 |
+
"R": 17,
|
| 61 |
+
"S": 18,
|
| 62 |
+
"T": 19,
|
| 63 |
+
"V": 20,
|
| 64 |
+
"W": 21,
|
| 65 |
+
"Y": 22
|
| 66 |
+
},
|
| 67 |
+
"unk_token": "<unk>"
|
| 68 |
+
}
|
| 69 |
+
}
|
tokenizer_config.json
ADDED
|
@@ -0,0 +1,34 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
{
|
| 2 |
+
"added_tokens_decoder": {
|
| 3 |
+
"0": {
|
| 4 |
+
"content": "<pad>",
|
| 5 |
+
"lstrip": false,
|
| 6 |
+
"normalized": false,
|
| 7 |
+
"rstrip": false,
|
| 8 |
+
"single_word": false,
|
| 9 |
+
"special": true
|
| 10 |
+
},
|
| 11 |
+
"1": {
|
| 12 |
+
"content": "<eos>",
|
| 13 |
+
"lstrip": false,
|
| 14 |
+
"normalized": false,
|
| 15 |
+
"rstrip": false,
|
| 16 |
+
"single_word": false,
|
| 17 |
+
"special": true
|
| 18 |
+
},
|
| 19 |
+
"2": {
|
| 20 |
+
"content": "<unk>",
|
| 21 |
+
"lstrip": false,
|
| 22 |
+
"normalized": false,
|
| 23 |
+
"rstrip": false,
|
| 24 |
+
"single_word": false,
|
| 25 |
+
"special": true
|
| 26 |
+
}
|
| 27 |
+
},
|
| 28 |
+
"clean_up_tokenization_spaces": true,
|
| 29 |
+
"eos_token": "<eos>",
|
| 30 |
+
"model_max_length": 1000000000000000019884624838656,
|
| 31 |
+
"pad_token": "<pad>",
|
| 32 |
+
"tokenizer_class": "PreTrainedTokenizerFast",
|
| 33 |
+
"unk_token": "<unk>"
|
| 34 |
+
}
|