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Add SAMIHS ICH segmentation package
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# Copyright (c) Meta Platforms, Inc. and affiliates.
# All rights reserved.
# This source code is licensed under the license found in the
# LICENSE file in the root directory of this source tree.
import torch
import torch.nn as nn
from typing import Type
class Adapter(nn.Module):
def __init__(self, D_features, mlp_ratio=0.25, act_layer=nn.GELU, skip_connect=True): #0.25
super().__init__()
self.skip_connect = skip_connect
D_hidden_features = int(D_features * mlp_ratio)
self.act = act_layer()
self.D_fc1 = nn.Linear(D_features, D_hidden_features)
self.D_fc2 = nn.Linear(D_hidden_features, D_features)
def forward(self, x):
# x is (BT, HW+1, D)
xs = self.D_fc1(x)
xs = self.act(xs)
xs = self.D_fc2(xs)
if self.skip_connect:
x = x + xs
else:
x = xs
return x
class AugAdapter(nn.Module):
def __init__(self, D_features, mlp_ratio=0.25, num_heads=12, act_layer=nn.GELU, skip_connect=True): #0.25
super().__init__()
self.skip_connect = skip_connect
D_hidden_features = int(D_features * mlp_ratio)
self.act = act_layer()
self.D_fc1 = nn.Linear(D_features, D_hidden_features)
self.D_fc2 = nn.Linear(D_hidden_features, D_features)
self.aug_fc = nn.Linear(num_heads, D_hidden_features)
def forward(self, x, important_key):
# x is (BT, HW+1, D)
xs = self.D_fc1(x)
aug = self.aug_fc(important_key)
xs = self.act(xs * aug)
xs = self.D_fc2(xs)
if self.skip_connect:
x = x + xs
else:
x = xs
return x
class MLPBlock(nn.Module):
def __init__(
self,
embedding_dim: int,
mlp_dim: int,
act: Type[nn.Module] = nn.GELU,
) -> None:
super().__init__()
self.lin1 = nn.Linear(embedding_dim, mlp_dim)
self.lin2 = nn.Linear(mlp_dim, embedding_dim)
self.act = act()
def forward(self, x: torch.Tensor) -> torch.Tensor:
x = self.lin1(x)
x = self.act(x)
x = self.lin2(x)
return x
#return self.lin2(self.act(self.lin1(x)))
# From https://github.com/facebookresearch/detectron2/blob/main/detectron2/layers/batch_norm.py # noqa
# Itself from https://github.com/facebookresearch/ConvNeXt/blob/d1fa8f6fef0a165b27399986cc2bdacc92777e40/models/convnext.py#L119 # noqa
class LayerNorm2d(nn.Module):
def __init__(self, num_channels: int, eps: float = 1e-6) -> None:
super().__init__()
self.weight = nn.Parameter(torch.ones(num_channels))
self.bias = nn.Parameter(torch.zeros(num_channels))
self.eps = eps
def forward(self, x: torch.Tensor) -> torch.Tensor:
u = x.mean(1, keepdim=True)
s = (x - u).pow(2).mean(1, keepdim=True)
x = (x - u) / torch.sqrt(s + self.eps)
x = self.weight[:, None, None] * x + self.bias[:, None, None]
return x