samihs-ich-segmentation / samihs_src /utils /generate_prompts.py
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Add SAMIHS ICH segmentation package
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import torch
import random
def generate_click_prompt(img, msk, pt_label = 1):
# return: img, prompt, prompt mask
pt_list = []
msk_list = []
b, c, h, w, d = msk.size()
msk = msk[:,0,:,:,:]
for i in range(d):
pt_list_s = []
msk_list_s = []
for j in range(b):
msk_s = msk[j,:,:,i]
indices = torch.nonzero(msk_s)
if indices.size(0) == 0:
# generate a random array between [0-h, 0-h]:
random_index = torch.randint(0, h, (2,)).to(device = msk.device)
new_s = msk_s
else:
random_index = random.choice(indices)
label = msk_s[random_index[0], random_index[1]]
new_s = torch.zeros_like(msk_s)
# convert bool tensor to int
new_s = (msk_s == label).to(dtype = torch.float)
# new_s[msk_s == label] = 1
pt_list_s.append(random_index)
msk_list_s.append(new_s)
pts = torch.stack(pt_list_s, dim=0) # b 2
msks = torch.stack(msk_list_s, dim=0)
pt_list.append(pts) # c b 2
msk_list.append(msks)
pt = torch.stack(pt_list, dim=-1) # b 2 d
msk = torch.stack(msk_list, dim=-1) # b h w d
msk = msk.unsqueeze(1) # b c h w d
return img, pt, msk #[b, 2, d], [b, c, h, w, d]
import torch
def get_click_prompt_eval(datapack, opt):
"""
返回与 get_click_prompt 相同的结构:(coords_torch, labels_torch)
- coords_torch: float32, [B,P,2]
- labels_torch: torch.int, [B,P]
"""
device = opt.device
# 无 GT:给一个中心点 + 0 标签(B,1,2)/(B,1)
if 'pt' not in datapack or 'p_label' not in datapack:
b, _, h, w = datapack['image'].shape
cx = (w - 1) / 2.0
cy = (h - 1) / 2.0
coords_torch = torch.tensor([[[cx, cy]]], dtype=torch.float32, device=device).repeat(b, 1, 1)
labels_torch = torch.zeros((b, 1), dtype=torch.int, device=device)
return (coords_torch, labels_torch)
# 有 GT:规格化到同一 dtype / device / shape
coords_torch = torch.as_tensor(datapack['pt'], dtype=torch.float32, device=device)
labels_torch = torch.as_tensor(datapack['p_label'], dtype=torch.int, device=device)
# 统一维度到 [B,P,2] / [B,P]
if coords_torch.ndim == 2: # 可能是 [P,2] 或 [B,2]
if 'image' in datapack and datapack['image'].shape[0] == coords_torch.shape[0] == coords_torch.shape[-2]:
# 这个分支仅当形状恰好 [B,2] 时成立 -> 转 [B,1,2]
coords_torch = coords_torch.unsqueeze(1)
if labels_torch.ndim == 1 and labels_torch.shape[0] == datapack['image'].shape[0]:
labels_torch = labels_torch.unsqueeze(1)
else:
# 视为 [P,2] -> [1,P,2];标签 [P] -> [1,P]
coords_torch = coords_torch.unsqueeze(0)
if labels_torch.ndim == 1:
labels_torch = labels_torch.unsqueeze(0)
elif coords_torch.ndim == 3:
# 期望已经是 [B,P,2],不处理
pass
else:
raise ValueError(f"Unexpected pt shape: {coords_torch.shape}")
# 标签维度对齐到 [B,P]
if labels_torch.ndim == 1:
labels_torch = labels_torch.unsqueeze(0)
return (coords_torch, labels_torch)
def get_click_prompt(datapack, opt):
if 'pt' not in datapack:
imgs, pt, masks = generate_click_prompt(imgs, masks)
else:
pt = datapack['pt']
point_labels = datapack['p_label']
point_coords = pt
coords_torch = torch.as_tensor(point_coords, dtype=torch.float32, device=opt.device)
labels_torch = torch.as_tensor(point_labels, dtype=torch.int, device=opt.device)
if len(pt.shape) == 2:
coords_torch, labels_torch = coords_torch[None, :, :], labels_torch[None, :]
pt = (coords_torch, labels_torch)
return pt