MsAlEhR
/

MetaBERTa-bigbird-gene

Mask Generation

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MsAlEhR commited on May 25, 2025

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961a8bf

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1 Parent(s): 6b7a0f4

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@@ -38,7 +38,7 @@ https://zenodo.org/records/12964684
     seq = "ATTTTTTTTTTTCCCCCCCCCCCGGGGGGGGATCGATGC"
     # Initialize the tokenizer
-    tokenizer = KmerTokenizer(kmerlen=6, overlapping=True, maxlen=400)
     tokenized_output = tokenizer.kmer_tokenize(seq)
     pad_token_id = 2  # Set pad token ID

     seq = "ATTTTTTTTTTTCCCCCCCCCCCGGGGGGGGATCGATGC"
     # Initialize the tokenizer
+    tokenizer = KmerTokenizer(kmerlen=6, overlapping=True, maxlen=4096)
     tokenized_output = tokenizer.kmer_tokenize(seq)
     pad_token_id = 2  # Set pad token ID