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f28d994 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 | """Dynamic-split GraphSAGE hetero recommender for validation fusion."""
from __future__ import annotations
import argparse
import importlib.util
from pathlib import Path
import numpy as np
import pandas as pd
import torch
import torch.nn as nn
import torch.nn.functional as F
from torch_geometric.nn import HeteroConv, SAGEConv
def load_lgcn_module(path: Path):
spec = importlib.util.spec_from_file_location("train_val_lgcn_ensemble", path)
module = importlib.util.module_from_spec(spec)
assert spec.loader is not None
spec.loader.exec_module(module)
return module
class ResidualSAGE(nn.Module):
def __init__(self, metadata, hidden_dim: int, num_layers: int, dropout: float):
super().__init__()
self.dropout = dropout
self.convs = nn.ModuleList()
self.norms = nn.ModuleList()
for _ in range(num_layers):
self.convs.append(
HeteroConv(
{et: SAGEConv((hidden_dim, hidden_dim), hidden_dim) for et in metadata[1]},
aggr="mean",
)
)
self.norms.append(nn.ModuleDict({nt: nn.LayerNorm(hidden_dim) for nt in metadata[0]}))
def forward(self, x_dict, edge_index_dict):
for conv, norm in zip(self.convs, self.norms):
h = conv(x_dict, edge_index_dict)
out = {}
for nt, x in x_dict.items():
y = h.get(nt, x)
y = F.dropout(F.relu(y), p=self.dropout, training=self.training)
out[nt] = norm[nt](x + y)
x_dict = out
return x_dict
class SAGERecommender(nn.Module):
def __init__(self, metadata, num_authors: int, paper_dim: int, hidden_dim: int, num_layers: int, dropout: float):
super().__init__()
self.author_emb = nn.Embedding(num_authors, hidden_dim)
self.paper_proj = nn.Linear(paper_dim, hidden_dim)
self.encoder = ResidualSAGE(metadata, hidden_dim, num_layers, dropout)
self.reset_parameters()
def reset_parameters(self):
nn.init.xavier_uniform_(self.author_emb.weight)
self.paper_proj.reset_parameters()
def encode(self, data):
x = {"author": self.author_emb.weight, "paper": self.paper_proj(data["paper"].x)}
return self.encoder(x, data.edge_index_dict)
def decode(self, z, edge_index):
src, dst = edge_index
return (z["author"][src] * z["paper"][dst]).sum(-1)
@torch.no_grad()
def predict_scores(model, data, pairs: np.ndarray, batch_size: int) -> np.ndarray:
model.eval()
z = model.encode(data)
a = z["author"].detach().cpu().numpy()
p = z["paper"].detach().cpu().numpy()
scores = []
for st in range(0, len(pairs), batch_size):
b = pairs[st : st + batch_size]
scores.append(np.sum(a[b[:, 0]] * p[b[:, 1]], axis=1).astype(np.float32))
return np.concatenate(scores)
def train_one(args, lgcn, parts, data, seed: int, out_dir: Path):
lgcn.set_seed(seed)
device = torch.device(args.device)
model = SAGERecommender(
data.metadata(),
args.num_authors,
parts["paper_feat_aug"].shape[1],
args.hidden_dim,
args.layers,
args.dropout,
).to(device)
opt = torch.optim.AdamW(model.parameters(), lr=args.lr, weight_decay=args.weight_decay)
pos_edges = data["author", "ref", "paper"].edge_index
batch_size = min(args.train_batch_size, pos_edges.size(1))
val_arr = parts["val_pairs"][["source", "target"]].to_numpy(np.int64)
labels = parts["val_pairs"]["label"].to_numpy(np.int8)
best = (-1.0, 0.0, 0.0)
best_state = None
for epoch in range(args.epochs):
model.train()
perm = torch.randperm(pos_edges.size(1), device=device)[:batch_size]
pos = pos_edges[:, perm]
neg = lgcn.sample_hard_negatives(parts, pos.size(1) * args.neg_per_pos, args.num_authors, args.num_papers, device)
z = model.encode(data)
pos_s = model.decode(z, pos).repeat_interleave(args.neg_per_pos)
neg_s = model.decode(z, neg)
loss = -F.logsigmoid(pos_s - neg_s).mean()
opt.zero_grad()
loss.backward()
torch.nn.utils.clip_grad_norm_(model.parameters(), 1.0)
opt.step()
if (epoch + 1) % args.eval_every == 0 or epoch == args.epochs - 1:
scores = predict_scores(model, data, val_arr, args.pred_batch_size)
f1, th, auc = lgcn.best_f1(labels, scores)
if f1 > best[0]:
best = (f1, th, auc)
best_state = {k: v.detach().cpu() for k, v in model.state_dict().items()}
np.save(out_dir / "scores" / f"val_sage_dot_s{seed}_d{args.hidden_dim}.npy", scores)
print(f"seed={seed} epoch={epoch+1:03d} loss={loss.item():.4f} val_f1={f1:.5f} th={th:.5f} auc={auc:.5f}")
if best_state is not None:
torch.save(best_state, out_dir / "checkpoints" / f"sage_val_s{seed}_d{args.hidden_dim}.pt")
return best
def main():
parser = argparse.ArgumentParser()
parser.add_argument("--package-root", type=Path, default=Path(__file__).resolve().parents[1])
parser.add_argument("--split-seed", type=int, required=True)
parser.add_argument("--train-frac", type=float, default=0.9)
parser.add_argument("--device", default="cuda:0")
parser.add_argument("--run-name", required=True)
parser.add_argument("--seeds", nargs="*", type=int, default=[0, 42])
parser.add_argument("--hidden-dim", type=int, default=256)
parser.add_argument("--layers", type=int, default=2)
parser.add_argument("--epochs", type=int, default=140)
parser.add_argument("--eval-every", type=int, default=20)
parser.add_argument("--lr", type=float, default=0.003)
parser.add_argument("--weight-decay", type=float, default=1e-4)
parser.add_argument("--dropout", type=float, default=0.1)
parser.add_argument("--train-batch-size", type=int, default=32768)
parser.add_argument("--pred-batch-size", type=int, default=65536)
parser.add_argument("--neg-per-pos", type=int, default=3)
parser.add_argument("--num-authors", type=int, default=6611)
parser.add_argument("--num-papers", type=int, default=79937)
args = parser.parse_args()
root = args.package_root
lgcn = load_lgcn_module(root / "code" / "train_val_lgcn_ensemble.py")
parts = lgcn.build_parts(root, None, args.num_papers, split_seed=args.split_seed, train_frac=args.train_frac)
data = lgcn.build_data(parts, args.num_authors, args.num_papers, torch.device(args.device))
out_dir = root / "validation_runs" / f"dynamic_seed{args.split_seed}" / args.run_name
(out_dir / "scores").mkdir(parents=True, exist_ok=True)
(out_dir / "checkpoints").mkdir(parents=True, exist_ok=True)
rows = []
for seed in args.seeds:
f1, th, auc = train_one(args, lgcn, parts, data, seed, out_dir)
rows.append({"seed": seed, "dim": args.hidden_dim, "f1": f1, "threshold": th, "auc": auc})
pd.DataFrame(rows).sort_values("f1", ascending=False).to_csv(out_dir / "model_results.csv", index=False)
labels = parts["val_pairs"]["label"].to_numpy(np.int8)
vals = []
names = []
for seed in args.seeds:
p = out_dir / "scores" / f"val_sage_dot_s{seed}_d{args.hidden_dim}.npy"
if p.exists():
vals.append(np.load(p))
names.append(p.stem)
if vals:
ens = np.mean(vals, axis=0)
f1, th, auc = lgcn.best_f1(labels, ens)
np.save(out_dir / "scores" / "val_sage_ensemble_mean.npy", ens)
(out_dir / "ensemble_result.txt").write_text(
f"models={','.join(names)}\nf1={f1:.8f}\nthreshold={th:.8f}\nauc={auc:.8f}\n"
)
print(f"\nMean ensemble: f1={f1:.5f} threshold={th:.5f} auc={auc:.5f}")
if __name__ == "__main__":
main()
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