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Update README.md

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@@ -28,7 +28,7 @@ Sequences were:
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  ### Loading the Model
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- \`\`\`python
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  from transformers import EsmModel, AutoTokenizer
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  import torch
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@@ -36,11 +36,11 @@ import torch
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  model = EsmModel.from_pretrained("MahTala/AbCDR-ESM2")
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  tokenizer = AutoTokenizer.from_pretrained("MahTala/AbCDR-ESM2")
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  model.eval()
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- \`\`\`
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  ### Extract Embeddings
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- \`\`\`python
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  # Prepare paired sequence
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  SEP_TOKEN = "-"
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  heavy_chain = (
@@ -66,7 +66,7 @@ mask = inputs["attention_mask"].unsqueeze(-1)
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  pooled = (embeddings * mask).sum(1) / mask.sum(1)
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  print(f"Embedding shape: {pooled.shape}") # (1, 2560)
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- \`\`\`
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  ## Input Format
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@@ -78,9 +78,9 @@ print(f"Embedding shape: {pooled.shape}") # (1, 2560)
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  - Uncommon residues should be replaced with X
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  **Example:**
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- \`\`\`python
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  sequence = "EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMS...-DIQMTQSPSSLSASVGDRVTITCRASQSISS..."
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- \`\`\`
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  ## Output
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  ### Loading the Model
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+ ```python
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  from transformers import EsmModel, AutoTokenizer
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  import torch
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  model = EsmModel.from_pretrained("MahTala/AbCDR-ESM2")
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  tokenizer = AutoTokenizer.from_pretrained("MahTala/AbCDR-ESM2")
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  model.eval()
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+ ```
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  ### Extract Embeddings
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+ ```python
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  # Prepare paired sequence
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  SEP_TOKEN = "-"
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  heavy_chain = (
 
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  pooled = (embeddings * mask).sum(1) / mask.sum(1)
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  print(f"Embedding shape: {pooled.shape}") # (1, 2560)
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+ ```
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  ## Input Format
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  - Uncommon residues should be replaced with X
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  **Example:**
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+ ```python
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  sequence = "EVQLVESGGGLVQPGGSLRLSCAASGFTFSSYAMS...-DIQMTQSPSSLSASVGDRVTITCRASQSISS..."
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+ ```
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  ## Output
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