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| 1 |
+
---
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| 2 |
+
language:
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| 3 |
+
- en
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| 4 |
+
license: mit
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| 5 |
+
tags:
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| 6 |
+
- tabular
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| 7 |
+
- classification
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| 8 |
+
- scikit-learn
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| 9 |
+
- ensemble-learning
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| 10 |
+
- breast-cancer-detection
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| 11 |
+
- medical-imaging
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| 12 |
+
datasets:
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| 13 |
+
- uci-wdbc
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| 14 |
+
metrics:
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| 15 |
+
- accuracy
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| 16 |
+
- precision
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| 17 |
+
- recall
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| 18 |
+
- f1
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| 19 |
+
- roc_auc
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| 20 |
+
pipeline_tag: tabular-classification
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| 21 |
+
---
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| 22 |
+
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| 23 |
+
# ποΈ Breast Cancer Detection Ensemble Pipeline
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| 24 |
+
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| 25 |
+
An optimized, production-ready machine learning pipeline featuring a **Soft-Voting Ensemble Classifier**. This model is trained on clinical data to distinguish between malignant and benign tumors with high sensitivity (recall), minimizing false negatives in diagnostic screening.
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| 26 |
+
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| 27 |
+
This repository structure is modeled after the methodology discussed in *"Comparison of ML Algorithms for Breast Cancer Prediction" (CTEMS 2018)*, expanding the baseline framework to a robust 5-model ensemble architecture with automated pipeline scaling.
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| 28 |
+
|
| 29 |
+
---
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| 30 |
+
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| 31 |
+
# π Model Description
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| 32 |
+
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| 33 |
+
The model utilizes a **Soft-Voting architecture** that aggregates predicted class probabilities across five diverse individual base estimators. Every individual classifier is encapsulated within a leakage-free preprocessing pipeline featuring automated standardization using `StandardScaler`.
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| 34 |
+
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| 35 |
+
## Component Estimators
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| 36 |
+
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| 37 |
+
1. **Random Forest Classifier**
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| 38 |
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- 72 estimators
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| 39 |
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- Balanced class weights
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| 40 |
+
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| 41 |
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2. **k-Nearest Neighbors (kNN)**
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| 42 |
+
- Euclidean distance metric
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| 43 |
+
- `k = 5`
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| 44 |
+
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| 45 |
+
3. **Gaussian Naive Bayes**
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| 46 |
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- Probabilistic baseline classifier
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| 47 |
+
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| 48 |
+
4. **Support Vector Classifier (SVC)**
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| 49 |
+
- `rbf` kernel
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| 50 |
+
- Probability estimation enabled
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| 51 |
+
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| 52 |
+
5. **Logistic Regression**
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| 53 |
+
- Regularized linear classifier
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| 54 |
+
- Balanced class distributions
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| 55 |
+
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| 56 |
+
---
|
| 57 |
+
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| 58 |
+
# π Dataset & Training Architecture
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| 59 |
+
|
| 60 |
+
- **Dataset Source:** Wisconsin Diagnosis Breast Cancer (WDBC) β UCI Machine Learning Repository
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| 61 |
+
- **Instances:** 569 samples
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| 62 |
+
- 357 Benign
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| 63 |
+
- 212 Malignant
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| 64 |
+
- **Features:** 30 real-valued clinical features extracted from digitized FNA images
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| 65 |
+
- **Split Strategy:** Stratified train-test split
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| 66 |
+
- Training: 398 samples
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| 67 |
+
- Testing: 171 samples
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| 68 |
+
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| 69 |
+
The pipeline uses:
|
| 70 |
+
- `StratifiedKFold` cross-validation
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| 71 |
+
- Leakage-free preprocessing
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| 72 |
+
- Automated scaling pipelines
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| 73 |
+
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| 74 |
+
---
|
| 75 |
+
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| 76 |
+
# β‘ Performance Metrics
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| 77 |
+
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| 78 |
+
Evaluation prioritizes **Recall (Sensitivity)** to reduce false negatives while maintaining strong overall classification accuracy.
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| 79 |
+
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| 80 |
+
| Model | Accuracy | Precision | Recall | F1-Score | ROC-AUC |
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| 81 |
+
|---|---|---|---|---|---|
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| 82 |
+
| **Ensemble (Soft Voting)** | **0.9766** | **0.9725** | **0.9907** | **0.9815** | **0.9972** |
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| 83 |
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| Random Forest | 0.9649 | 0.9633 | 0.9813 | 0.9722 | 0.9936 |
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| 84 |
+
| kNN | 0.9591 | 0.9545 | 0.9813 | 0.9677 | 0.9877 |
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| 85 |
+
| Support Vector Machine | 0.9766 | 0.9725 | 0.9907 | 0.9815 | 0.9974 |
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| 86 |
+
| Logistic Regression | 0.9766 | 0.9725 | 0.9907 | 0.9815 | 0.9969 |
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| 87 |
+
| Naive Bayes | 0.9591 | 0.9545 | 0.9813 | 0.9677 | 0.9892 |
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| 88 |
+
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| 89 |
+
> **Note:** Results may vary slightly depending on package versions and random seeds.
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| 90 |
+
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| 91 |
+
---
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| 92 |
+
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| 93 |
+
# π» Installation
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| 94 |
+
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| 95 |
+
## Dependencies
|
| 96 |
+
|
| 97 |
+
```text
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| 98 |
+
scikit-learn>=1.0
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| 99 |
+
numpy
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| 100 |
+
pandas
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| 101 |
+
joblib
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| 102 |
+
huggingface_hub
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| 103 |
+
```
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| 104 |
+
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| 105 |
+
Install dependencies:
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| 106 |
+
|
| 107 |
+
```bash
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| 108 |
+
pip install scikit-learn numpy pandas joblib huggingface_hub
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| 109 |
+
```
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| 110 |
+
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| 111 |
+
---
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| 112 |
+
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| 113 |
+
# π Dynamic Inference Example
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| 114 |
+
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| 115 |
+
You can directly download and run the trained pipeline from Hugging Face Hub.
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| 116 |
+
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| 117 |
+
```python
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| 118 |
+
import joblib
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| 119 |
+
import pandas as pd
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| 120 |
+
from huggingface_hub import hf_hub_download
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| 121 |
+
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| 122 |
+
# Download model pipeline
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| 123 |
+
model_path = hf_hub_download(
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| 124 |
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repo_id="NethranjaliSE/Breast-Cancer-detection-using-ML-Algorithm",
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| 125 |
+
filename="ensemble_soft_voting.pkl"
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| 126 |
+
)
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| 127 |
+
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| 128 |
+
# Load pipeline
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| 129 |
+
pipeline = joblib.load(model_path)
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| 130 |
+
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| 131 |
+
# Example sample input (30 WDBC features)
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| 132 |
+
sample_data = [[
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| 133 |
+
14.12, 19.28, 91.96, 654.8, 0.096, 0.11, 0.08, 0.04, 0.18, 0.06,
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| 134 |
+
0.25, 0.89, 1.82, 24.3, 0.006, 0.02, 0.02, 0.01, 0.01, 0.003,
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| 135 |
+
16.26, 25.67, 107.26, 880.5, 0.132, 0.21, 0.19, 0.09, 0.28, 0.08
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| 136 |
+
]]
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| 137 |
+
|
| 138 |
+
feature_names = (
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| 139 |
+
pipeline.feature_names_in_
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| 140 |
+
if hasattr(pipeline, "feature_names_in_")
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| 141 |
+
else None
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| 142 |
+
)
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| 143 |
+
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| 144 |
+
input_df = pd.DataFrame(sample_data, columns=feature_names)
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| 145 |
+
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| 146 |
+
# Predict
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| 147 |
+
prediction = pipeline.predict(input_df)
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| 148 |
+
probabilities = pipeline.predict_proba(input_df)[0]
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| 149 |
+
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| 150 |
+
diagnosis = (
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| 151 |
+
"Benign (Low Risk)"
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| 152 |
+
if prediction[0] == 1
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| 153 |
+
else "Malignant (High Risk)"
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| 154 |
+
)
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| 155 |
+
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| 156 |
+
print(f"Diagnostic Assessment: {diagnosis}")
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| 157 |
+
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| 158 |
+
print(
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| 159 |
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f"Confidence Matrix -> "
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| 160 |
+
f"Malignant: {probabilities[0]:.4f} | "
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| 161 |
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f"Benign: {probabilities[1]:.4f}"
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| 162 |
+
)
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| 163 |
+
```
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| 164 |
+
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| 165 |
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---
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| 166 |
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| 167 |
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# π Repository Structure
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| 168 |
+
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| 169 |
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```text
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| 170 |
+
.
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| 171 |
+
βββ ensemble_soft_voting.pkl
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| 172 |
+
βββ training_pipeline.ipynb
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| 173 |
+
βββ requirements.txt
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| 174 |
+
βββ README.md
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| 175 |
+
```
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| 176 |
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| 177 |
+
---
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| 178 |
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| 179 |
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# β οΈ Limitations & Intended Use
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| 180 |
+
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| 181 |
+
This model is developed strictly for:
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| 182 |
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- Academic research
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| 183 |
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- Educational purposes
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| 184 |
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- Machine learning experimentation
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| 185 |
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- Pipeline prototyping
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| 186 |
+
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| 187 |
+
It is **NOT** approved for:
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| 188 |
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- Clinical deployment
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| 189 |
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- Medical diagnosis
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| 190 |
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- Real-world healthcare decision-making
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| 191 |
+
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| 192 |
+
All diagnostic decisions must be performed by qualified medical professionals using certified medical systems.
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| 193 |
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| 194 |
+
---
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| 195 |
+
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| 196 |
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# π Citations
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| 197 |
+
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| 198 |
+
### Research Reference
|
| 199 |
+
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| 200 |
+
```bibtex
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| 201 |
+
@article{street1993nuclear,
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| 202 |
+
title={Nuclear feature extraction for breast tumor diagnosis},
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| 203 |
+
author={Street, W.N. and Wolberg, W.H. and Mangasarian, O.L.},
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| 204 |
+
journal={IS&T/SPIE Biomedical Imaging},
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| 205 |
+
year={1993}
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| 206 |
+
}
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| 207 |
+
```
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| 208 |
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| 209 |
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### Dataset Reference
|
| 210 |
+
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| 211 |
+
- UCI Machine Learning Repository
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| 212 |
+
- Breast Cancer Wisconsin (Diagnostic) Dataset
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| 213 |
+
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| 214 |
+
---
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| 215 |
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| 216 |
+
# π€ Acknowledgements
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| 217 |
+
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| 218 |
+
Special thanks to:
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| 219 |
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- UCI Machine Learning Repository
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| 220 |
+
- Scikit-learn contributors
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| 221 |
+
- Hugging Face Hub
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| 222 |
+
- Open-source ML research community
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| 223 |
+
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| 224 |
+
---
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| 225 |
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| 226 |
+
# π§ Model Author
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| 227 |
+
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| 228 |
+
**Sachini Praboda Nethranjali**
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| 229 |
+
Electronic and Computer Science Undergraduate
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| 230 |
+
University of Kelaniya, Sri Lanka
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