Update README.md
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README.md
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@@ -19,4 +19,63 @@ from model_loader import load_cell_type_model
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model = load_cell_type_model("hepg2")
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# Load model for K562
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model = load_cell_type_model("k562")
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model = load_cell_type_model("hepg2")
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# Load model for K562
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model = load_cell_type_model("k562")
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```
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### If you want to download weights
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```python
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def get_device():
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"""Automatically detects available device"""
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if torch.cuda.is_available():
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return torch.device("cuda")
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else:
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return torch.device("cpu")
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# Load Pre-Trained Model Weights for Human Legnet
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def download_and_load_model(cell_type="k562", repo_id="Ni-os/Human_Legnet", device=None):
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# Download main config
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config_path = hf_hub_download(
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repo_id=repo_id,
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filename="config.json"
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)
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# Load config
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with open(config_path, 'r') as f:
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config = json.load(f)
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# Create model
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model = LegNet(
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in_ch=config["in_ch"],
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stem_ch=config["stem_ch"],
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stem_ks=config["stem_ks"],
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ef_ks=config["ef_ks"],
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ef_block_sizes=config["ef_block_sizes"],
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pool_sizes=config["pool_sizes"],
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resize_factor=config["resize_factor"],
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activation=torch.nn.SiLU
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).to(device)
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# Determine which weight file to download
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weight_files = {
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"hepg2": "weights/hepg2_best_model_test1_val2.safetensors",
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"k562": "weights/k562_best_model_test1_val2.safetensors",
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"wtc11": "weights/wtc11_best_model_test1_val2.safetensors"
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}
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# Download weights
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weights_path = hf_hub_download(
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repo_id=repo_id,
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filename=weight_files[cell_type.lower()]
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)
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# Load weights into model
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state_dict = load_file(weights_path)
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model.load_state_dict(state_dict)
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model.eval()
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print(f"✅ Model for {cell_type} loaded!")
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return model
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device = get_device()
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print("Loading pre-trained model weights for Human Legnet")
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model_human_legnet = download_and_load_model("hepg2", device = device)
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