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README.md
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- Complex Structure Prediction
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- AlphaFold3
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datasets:
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- OneScience-
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---
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<p align="center">
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# Model Description
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AlphaFold 3 uses a Pairformer and a diffusion model to predict biomolecular complex structures. This model package provides a JAX / Flax inference implementation and database-search scripts, together with the accompanying Hugging Face dataset `OneScience-
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# Use Cases
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### Download the Model Package
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```bash
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hf download --model OneScience-
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cd AlphaFold3
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```
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### Training and Inference Data Overview
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The OneScience community has uploaded the complete data required for AlphaFold 3 inference and database searches to Hugging Face: [OneScience-
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```bash
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hf download --dataset OneScience-
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```
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### Model Weights
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- `inputs/7r6r_data.json`: contains sequence, MSA, and template information; suitable for direct inference.
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- `inputs/t1119_search.json`: contains only sequences; suitable for database-search pipeline validation.
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It is recommended to download the full Hugging Face dataset `OneScience-
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```text
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data/
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- Complex Structure Prediction
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- AlphaFold3
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datasets:
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- OneScience-Group/AlphaFold3_dataset
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---
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<p align="center">
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# Model Description
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AlphaFold 3 uses a Pairformer and a diffusion model to predict biomolecular complex structures. This model package provides a JAX / Flax inference implementation and database-search scripts, together with the accompanying Hugging Face dataset `OneScience-Group/AlphaFold3_dataset`.
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# Use Cases
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### Download the Model Package
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```bash
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hf download --model OneScience-Group/AlphaFold3 --local-dir ./AlphaFold3
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cd AlphaFold3
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```
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### Training and Inference Data Overview
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The OneScience community has uploaded the complete data required for AlphaFold 3 inference and database searches to Hugging Face: [OneScience-Group/AlphaFold3_dataset](https://huggingface.co/datasets/OneScience-Group/AlphaFold3_dataset). This model package does not include a training entry point; the dataset is primarily used to construct MSA / template features and perform database searches before inference.
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```bash
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hf download --dataset OneScience-Group/AlphaFold3_dataset --local-dir ./data/alphafold3
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```
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### Model Weights
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- `inputs/7r6r_data.json`: contains sequence, MSA, and template information; suitable for direct inference.
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- `inputs/t1119_search.json`: contains only sequences; suitable for database-search pipeline validation.
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It is recommended to download the full Hugging Face dataset `OneScience-Group/AlphaFold3_dataset` to `data/alphafold3/` under the model package. The relative directory structure expected by the database-search pipeline is as follows:
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```text
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data/
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