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@@ -15,7 +15,7 @@ tags:
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  - Complex Structure Prediction
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  - AlphaFold3
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  datasets:
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- - OneScience-Sugon/AlphaFold3_dataset
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  ---
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  <p align="center">
@@ -33,7 +33,7 @@ https://www.nature.com/articles/s41586-024-07487-w
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  # Model Description
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- AlphaFold 3 uses a Pairformer and a diffusion model to predict biomolecular complex structures. This model package provides a JAX / Flax inference implementation and database-search scripts, together with the accompanying Hugging Face dataset `OneScience-Sugon/AlphaFold3_dataset`.
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  # Use Cases
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@@ -84,7 +84,7 @@ hy-smi
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  ### Download the Model Package
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  ```bash
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- hf download --model OneScience-Sugon/AlphaFold3 --local-dir ./AlphaFold3
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  cd AlphaFold3
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  ```
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@@ -115,10 +115,10 @@ python -m onescience.flax_models.alphafold3.build_data
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  ### Training and Inference Data Overview
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- The OneScience community has uploaded the complete data required for AlphaFold 3 inference and database searches to Hugging Face: [OneScience-Sugon/AlphaFold3_dataset](https://huggingface.co/datasets/OneScience-Sugon/AlphaFold3_dataset). This model package does not include a training entry point; the dataset is primarily used to construct MSA / template features and perform database searches before inference.
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  ```bash
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- hf download --dataset OneScience-Sugon/AlphaFold3_dataset --local-dir ./data/alphafold3
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  ```
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  ### Model Weights
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@@ -234,7 +234,7 @@ This repository provides two examples:
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  - `inputs/7r6r_data.json`: contains sequence, MSA, and template information; suitable for direct inference.
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  - `inputs/t1119_search.json`: contains only sequences; suitable for database-search pipeline validation.
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- It is recommended to download the full Hugging Face dataset `OneScience-Sugon/AlphaFold3_dataset` to `data/alphafold3/` under the model package. The relative directory structure expected by the database-search pipeline is as follows:
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  ```text
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  data/
 
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  - Complex Structure Prediction
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  - AlphaFold3
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  datasets:
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+ - OneScience-Group/AlphaFold3_dataset
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  ---
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  <p align="center">
 
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  # Model Description
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+ AlphaFold 3 uses a Pairformer and a diffusion model to predict biomolecular complex structures. This model package provides a JAX / Flax inference implementation and database-search scripts, together with the accompanying Hugging Face dataset `OneScience-Group/AlphaFold3_dataset`.
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  # Use Cases
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  ### Download the Model Package
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  ```bash
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+ hf download --model OneScience-Group/AlphaFold3 --local-dir ./AlphaFold3
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  cd AlphaFold3
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  ```
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  ### Training and Inference Data Overview
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+ The OneScience community has uploaded the complete data required for AlphaFold 3 inference and database searches to Hugging Face: [OneScience-Group/AlphaFold3_dataset](https://huggingface.co/datasets/OneScience-Group/AlphaFold3_dataset). This model package does not include a training entry point; the dataset is primarily used to construct MSA / template features and perform database searches before inference.
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  ```bash
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+ hf download --dataset OneScience-Group/AlphaFold3_dataset --local-dir ./data/alphafold3
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  ```
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  ### Model Weights
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  - `inputs/7r6r_data.json`: contains sequence, MSA, and template information; suitable for direct inference.
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  - `inputs/t1119_search.json`: contains only sequences; suitable for database-search pipeline validation.
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+ It is recommended to download the full Hugging Face dataset `OneScience-Group/AlphaFold3_dataset` to `data/alphafold3/` under the model package. The relative directory structure expected by the database-search pipeline is as follows:
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  ```text
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  data/