File size: 2,157 Bytes
fe8e241 | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 | {
"model_name": "Antibody Deep Learning",
"framework": "TensorFlow",
"task": "antibody-binder-prediction-and-cdr3-generation",
"description": "Predict CTLA-4 and PD-1 antibody binders with CNN models and generate synthetic CDR3K/CDR3H antibody sequences with GAN models.",
"entry_points": {
"prepare_data": "scripts/01_prepare_data_compat.R",
"cnn_inference": "scripts/02_cnn_inference.R",
"gan_inference": "scripts/03_gan_inference.R",
"export_cnn_npz": "scripts/04_export_cnn_npz.R",
"train_cnn": "scripts/05_train_cnn.py",
"export_gan_npz": "scripts/06_export_gan_npz.R",
"train_gan": "scripts/07_train_gan.py",
"generate_from_trained_gan": "scripts/08_generate_from_trained_gan.py"
},
"source_package": "model",
"config": "conf/config.json",
"data": {
"blosum62": "model/BLOSUM62_with_deletion.Rdata",
"cnn_raw": "model/CNN/all_ab_pre_post.txt",
"cnn_preprocessed": [
"model/CNN/c1.RDS",
"model/CNN/c1_train.RDS",
"model/CNN/c1_train_y.RDS",
"model/CNN/c1_test.RDS",
"model/CNN/c1_test_y.RDS",
"model/CNN/p1.RDS",
"model/CNN/p1_train.RDS",
"model/CNN/p1_train_y.RDS",
"model/CNN/p1_test.RDS",
"model/CNN/p1_test_y.RDS"
],
"gan_preprocessed": [
"model/GAN/seq_all.RDS",
"model/GAN/seq_all_encoded.RDS"
]
},
"weight_dir": {
"cnn": [
"weight/CNN/model_c1",
"weight/CNN/model_p1"
],
"gan": [
"weight/GAN/GAN_model_1",
"weight/GAN/GAN_model_2",
"weight/GAN/GAN_model_3",
"weight/GAN/GAN_model_4",
"weight/GAN/GAN_model_5",
"weight/GAN/GAN_model_6",
"weight/GAN/GAN_model_7",
"weight/GAN/GAN_model_8",
"weight/GAN/GAN_model_9",
"weight/GAN/GAN_model_10",
"weight/GAN/GAN_model_11",
"weight/GAN/GAN_model_12",
"weight/GAN/GAN_model_13",
"weight/GAN/GAN_model_14",
"weight/GAN/GAN_model_15"
]
},
"runtime": {
"python": "3.11",
"tensorflow": "2.13.1 or compatible TensorFlow/DCU build",
"r": "3.6.3",
"dcu_module": "compiler/dtk/26.04"
},
"license": "CC-BY-NC-SA-4.0"
}
|