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#
# Copyright (C) 2022
#
####################################################################################################
#
# project : atmorep
#
# author : atmorep collaboration
#
# description :
#
# license :
#
####################################################################################################
import datetime
import json
import os
from pathlib import Path
from enum import Enum
import wandb
import code
from calendar import monthrange
#import properscoring as ps
import numpy as np
import torch.distributed as dist
import torch.utils.data.distributed
import pandas as pd
import atmorep.config.config as config
from atmorep.utils.logger import logger
####################################################################################################
class NetMode( Enum) :
indeterminate = 0
train = 1
test = 2
####################################################################################################
# Helper function to be able to json dump configs with classes
# in which case the class name is dumped
# Note that loading a config then will lead to problems/not be possible
def json_default(o):
if type(o) == type :
return o.__name__
else :
return o.to_json()
####################################################################################################
class Config :
def __init__( self) :
pass
def add_to_wandb( self, wandb) :
wandb.config.update( self.__dict__)
def get_self_dict( self) :
return self.__dict__
def print( self) :
self_dict = self.__dict__
for key, value in self_dict.items() :
print("{} : {}".format( key, value))
def create_dirs( self, wandb) :
dirname = Path( config.path_results, 'models/id{}'.format( wandb.run.id))
if not os.path.exists(dirname):
os.makedirs( dirname)
dirname = Path( config.path_results, 'id{}'.format( wandb.run.id))
if not os.path.exists(dirname):
os.makedirs( dirname)
def write_json( self, wandb) :
if not hasattr( wandb.run, 'id') :
return
json_str = json.dumps(self.__dict__ )
# save in directory with model files
dirname = Path( config.path_results, 'models/id{}'.format( wandb.run.id))
if not os.path.exists(dirname):
os.makedirs( dirname)
fname =Path(config.path_results,'models/id{}/model_id{}.json'.format(wandb.run.id,wandb.run.id))
with open(fname, 'w') as f :
f.write( json_str)
# also save in results directory
dirname = Path( config.path_results,'id{}'.format( wandb.run.id))
if not os.path.exists(dirname):
os.makedirs( dirname)
fname = Path( dirname, 'model_id{}.json'.format( wandb.run.id))
with open(fname, 'w') as f :
f.write( json_str)
def load_json( self, wandb_id) :
if '/' in wandb_id : # assumed to be full path instead of just id
fname = wandb_id
else :
fname = Path( config.path_models, 'id{}/model_id{}.json'.format( wandb_id, wandb_id))
try :
with open(fname, 'r') as f :
json_str = f.readlines()
except (OSError, IOError) as e:
# try path used for logging training results and checkpoints
try :
fname = Path( config.path_results, '/models/id{}/model_id{}.json'.format(wandb_id,wandb_id))
with open(fname, 'r') as f :
json_str = f.readlines()
except (OSError, IOError) as e:
print( f'Could not find fname due to {e}. Aborting.')
quit()
self.__dict__ = json.loads( json_str[0])
# fix for backward compatibility
if not hasattr( self, 'model_id') :
self.model_id = self.wandb_id
return self
####################################################################################################
def identity( func, *args) :
return func( *args)
####################################################################################################
def str_to_tensor(modelid):
return torch.tensor([ord(c) for c in modelid], dtype=torch.int32)
def tensor_to_str(tensor):
return ''.join([chr(x) for x in tensor])
####################################################################################################
def init_torch() :
torch.set_printoptions( linewidth=120)
use_cuda = torch.cuda.is_available()
if not use_cuda :
return torch.device( 'cpu')
num_accs_per_task = torch.cuda.device_count()
if num_accs_per_task == '1' :
devices = ['cuda']
else :
devices = [f'cuda:{i}' for i in range(num_accs_per_task)]
logger.info( 'Using devices : {}'.format( devices) )
torch.backends.cuda.matmul.allow_tf32 = True
return devices
####################################################################################################
def setup_ddp( with_ddp = True) :
rank = 0
size = 1
master_node = os.environ.get('MASTER_ADDR', '-1')
if with_ddp and (master_node != '-1'):
local_rank = int(os.environ.get("SLURM_LOCALID"))
ranks_per_node = int( os.environ.get('SLURM_TASKS_PER_NODE', '1')[0] )
rank = int(os.environ.get("SLURM_NODEID")) * ranks_per_node + local_rank
size = int(os.environ.get("SLURM_NTASKS"))
master_node = os.environ.get('MASTER_ADDR', '-1')
dist.init_process_group( backend='nccl', init_method='tcp://' + master_node + ':1345',
timeout=datetime.timedelta(seconds=10*8192),
world_size = size, rank = rank)
logger.info( f'Using DDP with MASTER_ADDR={master_node}.' )
else :
logger.info( 'DDP is not used.' )
return rank, size
####################################################################################################
def setup_wandb( with_wandb, cf, rank, project_name = None, entity = 'atmorep', wandb_id = None,
mode='offline') :
if with_wandb :
wandb.require("service")
if 0 == rank :
slurm_job_id_node = os.environ.get('SLURM_JOB_ID', '-1')
if slurm_job_id_node != '-1' :
cf.slurm_job_id = slurm_job_id_node
if None == wandb_id :
wandb.init( project = project_name, entity = entity,
mode = mode,
config = cf.get_self_dict() )
else :
wandb.init( id=wandb_id, resume='must',
mode = mode,
config = cf.get_self_dict() )
wandb.run.log_code( root='./atmorep', include_fn=lambda path : path.endswith('.py'))
# append slurm job id if defined
if slurm_job_id_node != '-1' :
wandb.run.name = 'atmorep-{}-{}'.format( wandb.run.id, slurm_job_id_node)
else :
wandb.run.name = 'atmorep-{}'.format( wandb.run.id)
print( 'Wandb run: {}'.format( wandb.run.name))
cf.wandb_id = wandb.run.id
# communicate wandb id to all nodes
wandb_id_int = torch.zeros( 8, dtype=torch.int32).cuda()
if cf.with_wandb and cf.with_ddp:
if 0 == rank :
wandb_id_int = str_to_tensor( cf.wandb_id).cuda()
dist.all_reduce( wandb_id_int, op=torch.distributed.ReduceOp.SUM )
cf.wandb_id = tensor_to_str( wandb_id_int)
####################################################################################################
def init_weights_uniform( m, scale=0.01):
'''Initialization of weights using uniform distribution'''
classname = m.__class__.__name__
if classname.find('ModuleList') != -1:
for mm in m :
mm.apply( lambda n: init_weights_uniform( n, scale) )
if classname.find('Linear') != -1:
# apply a uniform distribution to the weights and a bias=0
m.weight.data.uniform_(0.0, scale)
if m.bias is not None :
m.bias.data.fill_(0)
####################################################################################################
def shape_to_str( shape) :
ret ='{}'.format( list(shape)).replace(' ', '').replace(',','_').replace('(','s_').replace(')','')
ret = ret.replace('[','s_').replace(']','')
return ret
####################################################################################################
def get_model_filename( model = None, model_id = '', epoch=-2, with_model_path = True) :
if isinstance( model, str) :
name = model
elif model :
name = model.__class__.__name__
else : # backward compatibility
name = 'mod'
mpath = 'id{}'.format(model_id) if with_model_path else ''
if epoch > -2 :
# model_file = Path( config.path_results, 'models/id{}/{}_id{}_epoch{}.mod'.format(
# model_id, name, model_id, epoch))
model_file = Path( config.path_models, mpath, '{}_id{}_epoch{}.mod'.format(
name, model_id, epoch))
else :
model_file = Path( config.path_models, mpath, '{}_id{}.mod'.format( name, model_id))
return model_file
####################################################################################################
def relMSELoss( pred, target = None) :
val = torch.mean( (pred - target) * (pred - target)) / torch.mean( target * target)
return val
####################################################################################################
def days_in_month( year, month) :
'''Days in month in specific year'''
return monthrange( year, month)[1]
def days_until_month_in_year( year, month) :
'''Days in year until month starts'''
offset = 0
for im in range( month - 1) :
offset += monthrange( year, im+1)[1]
return offset
####################################################################################################
def tokenize( data, token_size = [-1,-1,-1]) :
data_tokenized = data
if token_size[0] > -1 :
data_shape = data.shape
tok_tot_t = int( data_shape[-3] / token_size[0])
tok_tot_x = int( data_shape[-2] / token_size[1])
tok_tot_y = int( data_shape[-1] / token_size[2])
if 5 == len(data_shape) :
t2 = torch.reshape( data, (data.shape[0], data.shape[1], tok_tot_t, token_size[0],
tok_tot_x, token_size[1], tok_tot_y, token_size[2]))
data_tokenized = t2.permute( [0, 1, 2, 4, 6, 3, 5, 7])
elif 4 == len(data_shape) :
t2 = torch.reshape( data, (-1, tok_tot_t, token_size[0],
tok_tot_x, token_size[1], tok_tot_y, token_size[2]))
data_tokenized = t2.permute( [0, 1, 3, 5, 4, 3, 6])
elif 3 == len(data_shape) :
t2 = torch.reshape( data, (tok_tot_t, token_size[0], tok_tot_x, token_size[1], tok_tot_y, token_size[2]))
data_tokenized = torch.transpose(torch.transpose( torch.transpose( t2, 4, 3), 2, 1), 3, 2)
elif 2 == len(data_shape) :
t2 = torch.reshape( data, (tok_tot_x, token_size[0], tok_tot_y, token_size[1]))
data_tokenized = torch.transpose( t2, 1, 2)
else :
assert False
return data_tokenized.contiguous()
####################################################################################################
def detokenize( data) :
data = data.transpose( [*np.arange( len(data.shape)-5), -3, -5, -2, -4, -1])
data = data.reshape( [*data.shape[:-6], np.prod( data.shape[-6:-4]), # time
np.prod( data.shape[-4:-2]), # lat
np.prod( data.shape[-2:])]) #lon
return data
####################################################################################################
def sgn_exp( x ) :
'''exponential preserving sign'''
return x.sign() * (torch.exp( x.abs() ) - 1.)
####################################################################################################
def token_info_to_time( token_info, return_pd = True) :
str = f'{int(token_info[0])}-{int(np.floor(token_info[1]))+1}-{int(token_info[2])}'
# correct for 1 day since %j strangely starts from 1
date = pd.to_datetime( str, format='%Y-%j-%H')
return date if return_pd else (date.year, date.month, date.day, date.hour)
####################################################################################################
def list_replace_rec( list, idxs, val) :
if len(idxs) == 1 :
list.__setitem__( idxs[0], val)
else :
list_replace_rec( list.__getitem__( idxs[0]), idxs[1:], val)
list.__setitem__( idxs[0], list.__getitem__( idxs[0]) )
####################################################################################################
def Gaussian( x, mu=0., std_dev=1.) :
# return (1 / (std_dev*np.sqrt(2.*np.pi))) * torch.exp( -0.5 * (x-mu)*(x-mu) / (std_dev*std_dev))
# unnormalized Gaussian where maximum is one
return torch.exp( -0.5 * (x-mu)*(x-mu) / (std_dev*std_dev))
def erf( x, mu=0., std_dev=1.) :
c1 = torch.sqrt( torch.tensor(0.5 * np.pi) )
c2 = torch.sqrt( 1. / torch.tensor(std_dev * std_dev))
c3 = torch.sqrt( torch.tensor( 2.) )
val = c1 * ( 1./c2 - std_dev * torch.special.erf( (mu - x) / (c3 * std_dev) ) )
return val
########################################
# def CRPS_ps( y, mu, std_dev) :
# val = ps.crps_gaussian(y.cpu().detach().numpy(), mu=mu.cpu().detach().numpy(), sig=std_dev.cpu().detach().numpy())
# return torch.tensor(val)
def CRPS( y, mu, std_dev) :
# see Eq. A2 in S. Rasp and S. Lerch. Neural networks for postprocessing ensemble weather forecasts. Monthly Weather Review, 146(11):3885 – 3900, 2018.
c1 = np.sqrt(1./np.pi)
t1 = 2. * erf( (y-mu) / std_dev) - 1.
t2 = 2. * Gaussian( (y-mu) / std_dev)
val = std_dev * ( (y-mu)/std_dev * t1 + t2 - c1 )
return val
########################################
# def kernel_crps_ps( target, ens) :
# val = ps.crps_ensemble(target.cpu().detach().numpy(), ens.permute([1,2,0]).cpu().detach().numpy())
# return torch.tensor(val)
def kernel_crps( target, ens, fair = True) :
ens_size = ens.shape[0]
mae = torch.cat( [(target - mem).abs().mean().unsqueeze(0) for mem in ens], 0).mean()
if ens_size == 1:
return mae
coef = -1.0 / (2.0 * ens_size * (ens_size - 1)) if fair else -1.0 / (2.0 * ens_size**2)
temp = [(p1 - p2).abs().sum() for p1 in ens for p2 in ens]
ens_var = coef * torch.tensor( [(p1 - p2).abs().sum() for p1 in ens for p2 in ens]).sum()
ens_var /= (ens.shape[1]*ens.shape[2])
return mae + ens_var
########################################
def get_weights(lats_idx, lat_min = -90., lat_max = 90., reso = 0.25):
lat_range = lat_max - lat_min
bins = lat_range/reso+1
theta_weight = np.array([np.cos(w) for w in np.arange( lat_max * np.pi/lat_range , lat_min * np.pi/lat_range, -np.pi/bins)], dtype = np.float32)
return theta_weight[lats_idx]
########################################
def weighted_mse(x, target, weights):
return torch.sum(weights * (x - target) **2 )/torch.sum(weights)
########################################
def check_num_samples(num_samples_validate, batch_size):
assert num_samples_validate // batch_size > 0, f"Num samples validate: {num_samples_validate} is smaller than batch size: {batch_size}. Please increase it."
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