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"name": "CodonTransformer",
"version": "1.6.7",
"layout": {
"conf": "Repository configuration and auxiliary project files.",
"model": "CodonTransformer Python package and bundled model resources.",
"scripts": "Executable training, inference, SLURM, notebook, test, and demo files.",
"weight": "Local model weights and checkpoints."
},
"entrypoints": {
"prepare_pretrain_data": "scripts/slurm/prepare_pretrain_data.sh",
"prepare_finetune_data": "scripts/slurm/prepare_finetune_data.sh",
"export_finetuned_model": "scripts/slurm/export_finetuned_model.sh",
"inference_finetuned": "scripts/slurm/run_inference_finetuned.sh",
"finetune": "scripts/finetune.py",
"pretrain": "scripts/pretrain.py",
"inference_single": "scripts/slurm/run_inference_single.sh",
"inference_multiple": "scripts/slurm/run_inference_multiple.sh",
"inference_batch": "scripts/slurm/run_inference_batch.sh"
},
"resources": {
"tokenizer": "model/src/CodonTransformerTokenizer.json",
"demo_dataset": "scripts/demo/sample_dataset.csv",
"raw_training_data": "scripts/data/raw",
"processed_training_data": "scripts/data/processed",
"checkpoints": "weight/checkpoints"
}
}
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