"""Fit an elastic tensor from Equiformer V3 stress predictions.""" from __future__ import annotations import argparse import os from pathlib import Path os.environ.setdefault( "ONESCIENCE_EQUIFORMER_V3_JD_PATH", str(Path(__file__).resolve().parent / "weight" / "Jd.pt"), ) from ase.build import bulk from ase.io import read, write from onescience.utils.equiformer_v3 import ( EquiformerV3Calculator, relax_structure, run_elastic_workflow, write_workflow_result, ) def default_checkpoint() -> str: return str( Path(__file__).resolve().parent / "weight" / "omat24-mptrj-salex_gradient.pt" ) def load_structure(path: str | None): if path: return read(path) return bulk("Cu") def main() -> None: parser = argparse.ArgumentParser(description=__doc__) parser.add_argument("--checkpoint") parser.add_argument( "--input", help="periodic structure readable by ASE; defaults to built-in bulk Cu", ) parser.add_argument( "--relax", action="store_true", help="relax the cell and atomic positions before applying strains", ) parser.add_argument( "--normal-strains", type=float, nargs="+", default=(-0.01, 0.01) ) parser.add_argument( "--shear-strains", type=float, nargs="+", default=(-0.02, 0.02) ) parser.add_argument( "--relax-positions", action="store_true", help="relax atomic positions at fixed cell for every deformation", ) parser.add_argument("--relax-fmax", type=float, default=0.02) parser.add_argument("--relax-steps", type=int, default=100) parser.add_argument("--device", default="cuda") parser.add_argument("--output", default="outputs/elastic.json") args = parser.parse_args() checkpoint = args.checkpoint or default_checkpoint() calculator = EquiformerV3Calculator.from_checkpoint( checkpoint, device=args.device ) structure = load_structure(args.input) initial_relaxation = None if args.relax: structure, initial_relaxation = relax_structure( structure, calculator, relax_cell=True, fmax=args.relax_fmax, steps=args.relax_steps, ) relaxed_output = Path(args.output).with_name("elastic_relaxed.cif") relaxed_output.parent.mkdir(parents=True, exist_ok=True) write(relaxed_output, structure) result = run_elastic_workflow( structure, calculator, normal_strains=args.normal_strains, shear_strains=args.shear_strains, relax_positions=args.relax_positions, relax_fmax=args.relax_fmax, relax_steps=args.relax_steps, ) result["checkpoint"] = str(checkpoint) result["initial_relaxation"] = initial_relaxation output = write_workflow_result(result, args.output) print("formula:", result["formula"]) print("bulk modulus, Hill (GPa):", result["bulk_modulus_gpa"]["hill"]) print("result:", output) if __name__ == "__main__": main()