Upload folder using huggingface_hub
Browse files- README.md +137 -0
- conf/config.yaml +61 -0
- config.json +43 -0
- configuration.json +12 -0
- model/glonet.py +71 -0
- scripts/data_loader.py +31 -0
- scripts/fake_data.py +50 -0
- scripts/inference.py +43 -0
- scripts/result.py +139 -0
- scripts/train.py +99 -0
- weight/.gitkeep +0 -0
README.md
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| 1 |
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---
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| 2 |
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frameworks: PyTorch
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| 3 |
+
language:
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| 4 |
+
- en
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| 5 |
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license: apache-2.0
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| 6 |
+
tags:
|
| 7 |
+
- OneScience
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| 8 |
+
- Earth Science
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| 9 |
+
- Ocean Forecasting
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| 10 |
+
- Global Ocean Forecasting
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| 11 |
+
- GLORYS12
|
| 12 |
+
- FNO
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| 13 |
+
tasks: []
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| 14 |
+
datasets:
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| 15 |
+
- GLORYS12
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| 16 |
+
---
|
| 17 |
+
<p align="center">
|
| 18 |
+
<strong>
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| 19 |
+
<span style="font-size: 30px;">GLONET</span>
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| 20 |
+
</strong>
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| 21 |
+
</p>
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| 22 |
+
|
| 23 |
+
# Model Introduction
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| 24 |
+
|
| 25 |
+
GLONET (Global Ocean Neural Network) is a global ocean neural-network forecasting system developed by Mercator Ocean International, a leading European ocean forecasting center.
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| 26 |
+
|
| 27 |
+
# Model Description
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| 28 |
+
|
| 29 |
+
GLONET forecasts global ocean states. It takes two consecutive daily states as input and outputs the 34-channel ocean state for the next day.
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| 30 |
+
|
| 31 |
+
# Use Cases
|
| 32 |
+
|
| 33 |
+
| Scenario | Description |
|
| 34 |
+
| :---: | :--- |
|
| 35 |
+
| Global ocean forecast research | Train a dual-branch FNO/CNN ocean forecast model with GLORYS12-compatible data. |
|
| 36 |
+
| Local quick validation | Use synthetic ocean fields to check data loading, pretraining, fine-tuning, inference, and visualization. |
|
| 37 |
+
| ModelScope / OneCode execution | Download the standalone model package, install dependencies, and run the scripts directly. |
|
| 38 |
+
| Multi-GPU training | Run multi-GPU training with `torchrun`. |
|
| 39 |
+
|
| 40 |
+
# Usage Guide
|
| 41 |
+
|
| 42 |
+
## 1. OneCode Usage
|
| 43 |
+
|
| 44 |
+
Experience intelligent one-click AI4S programming through the OneCode online environment:
|
| 45 |
+
|
| 46 |
+
[Click to Experience Intelligent One-Click AI4S Programming](https://web-2069360198568017922-iaaj.ksai.scnet.cn:58043/home)
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| 47 |
+
|
| 48 |
+
## 2. Manual Installation and Usage
|
| 49 |
+
|
| 50 |
+
**Hardware Requirements**
|
| 51 |
+
|
| 52 |
+
- A GPU or DCU is recommended.
|
| 53 |
+
- CPU can be used for import and small-scale connectivity verification; full training and inference will be slow.
|
| 54 |
+
- DCU users must install DTK in advance. DTK 25.04.2 or above, or the OneScience recommended version matching your cluster, is recommended.
|
| 55 |
+
|
| 56 |
+
### Download the Model Package
|
| 57 |
+
|
| 58 |
+
```bash
|
| 59 |
+
hf download OneScience-Group/GLONET --local-dir ./GLONET
|
| 60 |
+
cd GLONET
|
| 61 |
+
```
|
| 62 |
+
|
| 63 |
+
### Install the Runtime Environment
|
| 64 |
+
|
| 65 |
+
**DCU Environment**
|
| 66 |
+
|
| 67 |
+
```bash
|
| 68 |
+
# Please activate DTK and CONDA first
|
| 69 |
+
conda create -n onescience311 python=3.11 -y
|
| 70 |
+
conda activate onescience311
|
| 71 |
+
# uv installation is supported
|
| 72 |
+
pip install onescience[earth-dcu] -i http://mirrors.onescience.ai:3141/pypi/simple/ --trusted-host mirrors.onescience.ai
|
| 73 |
+
```
|
| 74 |
+
|
| 75 |
+
**GPU Environment**
|
| 76 |
+
```bash
|
| 77 |
+
# Please activate CONDA first
|
| 78 |
+
conda create -n onescience311 python=3.11 -y libstdcxx-ng=12 libgcc-ng=12 gcc_linux-64=12 gxx_linux-64=12
|
| 79 |
+
conda activate onescience311
|
| 80 |
+
# uv installation is supported
|
| 81 |
+
pip install onescience[earth-gpu] -i http://mirrors.onescience.ai:3141/pypi/simple/ --trusted-host mirrors.onescience.ai
|
| 82 |
+
```
|
| 83 |
+
|
| 84 |
+
### Training Data Introduction
|
| 85 |
+
|
| 86 |
+
The original work uses GLORYS12 reanalysis data. Real data must first be converted to the channel order and grid specified in `conf/config.yaml`; the raw GLORYS12 data is not included in this package. The default synthetic data is only for interface checks:
|
| 87 |
+
|
| 88 |
+
```bash
|
| 89 |
+
python scripts/fake_data.py
|
| 90 |
+
```
|
| 91 |
+
|
| 92 |
+
### Training
|
| 93 |
+
|
| 94 |
+
Single GPU:
|
| 95 |
+
|
| 96 |
+
```bash
|
| 97 |
+
python scripts/train.py
|
| 98 |
+
```
|
| 99 |
+
|
| 100 |
+
Multi-GPU:
|
| 101 |
+
|
| 102 |
+
```bash
|
| 103 |
+
torchrun --nproc_per_node=8 scripts/train.py
|
| 104 |
+
```
|
| 105 |
+
|
| 106 |
+
Checkpoints are saved to `data/checkpoints/` by default.
|
| 107 |
+
|
| 108 |
+
### Training Weights
|
| 109 |
+
|
| 110 |
+
This repository provides weights trained on GLORYS12 data in the `weight/` folder. The weight files will be uploaded soon and are expected to be available in the near future.
|
| 111 |
+
|
| 112 |
+
### Inference
|
| 113 |
+
|
| 114 |
+
```bash
|
| 115 |
+
python scripts/inference.py
|
| 116 |
+
```
|
| 117 |
+
|
| 118 |
+
The prediction tensor is written to `result/glonet/data/prediction.pt` by default.
|
| 119 |
+
|
| 120 |
+
### Evaluation and Visualization
|
| 121 |
+
|
| 122 |
+
```bash
|
| 123 |
+
python scripts/result.py
|
| 124 |
+
```
|
| 125 |
+
|
| 126 |
+
The default output is `result/glonet/prediction.png`. Meaningful errors are computed only when a real reference field is provided.
|
| 127 |
+
|
| 128 |
+
# Official OneScience Resources
|
| 129 |
+
|
| 130 |
+
| Platform | OneScience Main Repository | Skills Repository |
|
| 131 |
+
| --- | --- | --- |
|
| 132 |
+
| Gitee | https://gitee.com/onescience-ai/onescience | https://gitee.com/onescience-ai/oneskills |
|
| 133 |
+
| GitHub | https://github.com/onescience-ai/OneScience | https://github.com/onescience-ai/oneskills |
|
| 134 |
+
|
| 135 |
+
# Citation and License
|
| 136 |
+
|
| 137 |
+
- This repository is a reproduction of the original GLONET paper.
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conf/config.yaml
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| 1 |
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project:
|
| 2 |
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name: glonet_reference
|
| 3 |
+
seed: 42
|
| 4 |
+
result_dir: ./result/glonet
|
| 5 |
+
|
| 6 |
+
data:
|
| 7 |
+
data_dir: ./data/
|
| 8 |
+
channels:
|
| 9 |
+
- temperature_0.49m
|
| 10 |
+
- temperature_47m
|
| 11 |
+
- temperature_92m
|
| 12 |
+
- temperature_155m
|
| 13 |
+
- salinity_222m
|
| 14 |
+
- salinity_318m
|
| 15 |
+
- salinity_380m
|
| 16 |
+
- salinity_453m
|
| 17 |
+
- salinity_541m
|
| 18 |
+
- u_643m
|
| 19 |
+
- u_763m
|
| 20 |
+
- u_902m
|
| 21 |
+
- u_1245m
|
| 22 |
+
- u_1684m
|
| 23 |
+
- u_2225m
|
| 24 |
+
- u_3220m
|
| 25 |
+
- u_3597m
|
| 26 |
+
- u_3992m
|
| 27 |
+
- u_4405m
|
| 28 |
+
- u_4833m
|
| 29 |
+
- u_5274m
|
| 30 |
+
- v_643m
|
| 31 |
+
- v_763m
|
| 32 |
+
- v_902m
|
| 33 |
+
- v_1245m
|
| 34 |
+
- v_1684m
|
| 35 |
+
- v_2225m
|
| 36 |
+
- v_3220m
|
| 37 |
+
- v_3597m
|
| 38 |
+
- v_3992m
|
| 39 |
+
- v_4405m
|
| 40 |
+
- v_4833m
|
| 41 |
+
- v_5274m
|
| 42 |
+
- ssh_surface
|
| 43 |
+
grid: [16, 32]
|
| 44 |
+
input_steps: 2
|
| 45 |
+
output_steps: 4
|
| 46 |
+
synthetic_samples: 32
|
| 47 |
+
batch_size: 2
|
| 48 |
+
|
| 49 |
+
model:
|
| 50 |
+
hidden_channels: 32
|
| 51 |
+
modes: [6, 8]
|
| 52 |
+
layers: 4
|
| 53 |
+
|
| 54 |
+
training:
|
| 55 |
+
epochs: 10
|
| 56 |
+
learning_rate: 0.0001
|
| 57 |
+
device: auto
|
| 58 |
+
checkpoint_dir: ./data/checkpoints
|
| 59 |
+
checkpoint: ./data/checkpoints/model_glonet.pth
|
| 60 |
+
pretrain_rollout_steps: 1
|
| 61 |
+
finetune_rollout_steps: 4
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config.json
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| 1 |
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{
|
| 2 |
+
"model_name": "GLONET",
|
| 3 |
+
"model_type": "glonet",
|
| 4 |
+
"architectures": [
|
| 5 |
+
"GLONET"
|
| 6 |
+
],
|
| 7 |
+
"framework": "PyTorch",
|
| 8 |
+
"domain": "ocean",
|
| 9 |
+
"task": "global-ocean-forecasting",
|
| 10 |
+
"implementation": {
|
| 11 |
+
"entry_point": "model/glonet.py",
|
| 12 |
+
"scope": "two-branch FNO/CNN reference implementation"
|
| 13 |
+
},
|
| 14 |
+
"architecture": {
|
| 15 |
+
"family": "Fourier neural operator with convolutional branch",
|
| 16 |
+
"grid_shape": [
|
| 17 |
+
16,
|
| 18 |
+
32
|
| 19 |
+
],
|
| 20 |
+
"input_steps": 2,
|
| 21 |
+
"input_channels_per_step": 34,
|
| 22 |
+
"input_channels": 68,
|
| 23 |
+
"output_channels": 34,
|
| 24 |
+
"hidden_channels": 32,
|
| 25 |
+
"spectral_modes": [
|
| 26 |
+
6,
|
| 27 |
+
8
|
| 28 |
+
],
|
| 29 |
+
"spectral_layers": 4,
|
| 30 |
+
"activation": "GELU"
|
| 31 |
+
},
|
| 32 |
+
"data": {
|
| 33 |
+
"dataset": "GLORYS12",
|
| 34 |
+
"time_step_days": 1,
|
| 35 |
+
"output_steps": 4,
|
| 36 |
+
"protocol": "synthetic_glorys12_shape"
|
| 37 |
+
},
|
| 38 |
+
"configuration_sources": [
|
| 39 |
+
"conf/config.yaml",
|
| 40 |
+
"model/glonet.py",
|
| 41 |
+
"scripts/data_loader.py"
|
| 42 |
+
]
|
| 43 |
+
}
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configuration.json
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| 1 |
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{
|
| 2 |
+
"framework": "PyTorch",
|
| 3 |
+
"task": "ocean_forecasting",
|
| 4 |
+
"model": "GLONET",
|
| 5 |
+
"input_format": "BTCHW",
|
| 6 |
+
"protocol": "synthetic_glorys12_shape",
|
| 7 |
+
"default_config": "conf/config.yaml",
|
| 8 |
+
"train": "scripts/train.py",
|
| 9 |
+
"inference": "scripts/inference.py",
|
| 10 |
+
"evaluation": "scripts/result.py",
|
| 11 |
+
"visualization": "scripts/result.py"
|
| 12 |
+
}
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model/glonet.py
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| 1 |
+
"""GLONET reference architecture based on the public paper description."""
|
| 2 |
+
|
| 3 |
+
import torch
|
| 4 |
+
from torch import nn
|
| 5 |
+
|
| 6 |
+
|
| 7 |
+
class SpectralConv2d(nn.Module):
|
| 8 |
+
def __init__(self, channels, modes):
|
| 9 |
+
super().__init__()
|
| 10 |
+
self.modes_y, self.modes_x = modes
|
| 11 |
+
self.weight = nn.Parameter(torch.randn(channels, channels, self.modes_y, self.modes_x, 2) * 0.02)
|
| 12 |
+
|
| 13 |
+
def forward(self, x):
|
| 14 |
+
height, width = x.shape[-2:]
|
| 15 |
+
spectrum = torch.fft.rfft2(x, norm="ortho")
|
| 16 |
+
out = torch.zeros_like(spectrum)
|
| 17 |
+
modes_y = min(self.modes_y, height)
|
| 18 |
+
modes_x = min(self.modes_x, spectrum.shape[-1])
|
| 19 |
+
weight = torch.view_as_complex(self.weight[:, :, :modes_y, :modes_x].contiguous())
|
| 20 |
+
out[:, :, :modes_y, :modes_x] = torch.einsum(
|
| 21 |
+
"bixy,ioxy->boxy", spectrum[:, :, :modes_y, :modes_x], weight
|
| 22 |
+
)
|
| 23 |
+
return torch.fft.irfft2(out, s=(height, width), norm="ortho")
|
| 24 |
+
|
| 25 |
+
|
| 26 |
+
class SpectralBlock(nn.Module):
|
| 27 |
+
def __init__(self, channels, modes):
|
| 28 |
+
super().__init__()
|
| 29 |
+
self.spectral = SpectralConv2d(channels, modes)
|
| 30 |
+
self.pointwise = nn.Conv2d(channels, channels, 1)
|
| 31 |
+
self.activation = nn.GELU()
|
| 32 |
+
|
| 33 |
+
def forward(self, x):
|
| 34 |
+
return self.activation(self.spectral(x) + self.pointwise(x))
|
| 35 |
+
|
| 36 |
+
|
| 37 |
+
class CNNBranch(nn.Module):
|
| 38 |
+
def __init__(self, channels):
|
| 39 |
+
super().__init__()
|
| 40 |
+
self.net = nn.Sequential(
|
| 41 |
+
nn.Conv2d(channels, channels, 3, padding=1), nn.GELU(),
|
| 42 |
+
nn.Conv2d(channels, channels, 3, padding=1), nn.GELU(),
|
| 43 |
+
)
|
| 44 |
+
|
| 45 |
+
def forward(self, x):
|
| 46 |
+
return self.net(x)
|
| 47 |
+
|
| 48 |
+
|
| 49 |
+
class GLONET(nn.Module):
|
| 50 |
+
"""Two-day to one-day global ocean forecast reference model.
|
| 51 |
+
|
| 52 |
+
The paper does not publish a complete layer configuration, so all sizing
|
| 53 |
+
choices remain explicit constructor parameters rather than hidden claims.
|
| 54 |
+
"""
|
| 55 |
+
|
| 56 |
+
def __init__(self, in_channels, out_channels=None, hidden_channels=32, modes=(6, 8), layers=4):
|
| 57 |
+
super().__init__()
|
| 58 |
+
out_channels = out_channels or in_channels
|
| 59 |
+
self.input_projection = nn.Conv2d(in_channels, hidden_channels, 1)
|
| 60 |
+
self.fno = nn.Sequential(*[SpectralBlock(hidden_channels, modes) for _ in range(layers)])
|
| 61 |
+
self.cnn = CNNBranch(hidden_channels)
|
| 62 |
+
self.output_projection = nn.Sequential(
|
| 63 |
+
nn.Conv2d(hidden_channels * 2, hidden_channels, 1), nn.GELU(),
|
| 64 |
+
nn.Conv2d(hidden_channels, out_channels, 1),
|
| 65 |
+
)
|
| 66 |
+
|
| 67 |
+
def forward(self, x):
|
| 68 |
+
if x.ndim == 5:
|
| 69 |
+
x = x.flatten(1, 2)
|
| 70 |
+
features = self.input_projection(x)
|
| 71 |
+
return self.output_projection(torch.cat((self.fno(features), self.cnn(features)), dim=1))
|
scripts/data_loader.py
ADDED
|
@@ -0,0 +1,31 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Synthetic GLORYS12-shaped data for smoke tests and local development."""
|
| 2 |
+
|
| 3 |
+
import glob
|
| 4 |
+
import torch
|
| 5 |
+
from torch.utils.data import Dataset
|
| 6 |
+
|
| 7 |
+
try:
|
| 8 |
+
import h5py
|
| 9 |
+
except ImportError:
|
| 10 |
+
h5py = None
|
| 11 |
+
|
| 12 |
+
|
| 13 |
+
class SyntheticOceanDataset(Dataset):
|
| 14 |
+
def __init__(self, samples, channels, grid, input_steps=2, output_steps=1, seed=42, data_dir=None):
|
| 15 |
+
generator = torch.Generator().manual_seed(seed)
|
| 16 |
+
files = sorted(glob.glob(f"{data_dir}/data/*.h5")) if data_dir else []
|
| 17 |
+
if files and h5py is not None:
|
| 18 |
+
with h5py.File(files[0], "r") as handle:
|
| 19 |
+
fields = torch.from_numpy(handle["fields"][:]).float()
|
| 20 |
+
total = min(samples, fields.shape[0] - input_steps - output_steps + 1)
|
| 21 |
+
self.x = torch.stack([fields[i:i + input_steps] for i in range(total)])
|
| 22 |
+
self.y = torch.stack([fields[i + input_steps:i + input_steps + output_steps] for i in range(total)])
|
| 23 |
+
else:
|
| 24 |
+
self.x = torch.randn(samples, input_steps, channels, *grid, generator=generator)
|
| 25 |
+
self.y = torch.randn(samples, output_steps, channels, *grid, generator=generator)
|
| 26 |
+
|
| 27 |
+
def __len__(self):
|
| 28 |
+
return self.x.shape[0]
|
| 29 |
+
|
| 30 |
+
def __getitem__(self, index):
|
| 31 |
+
return self.x[index], self.y[index]
|
scripts/fake_data.py
ADDED
|
@@ -0,0 +1,50 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
"""Generate a small synthetic dataset description for local smoke tests."""
|
| 2 |
+
|
| 3 |
+
import argparse
|
| 4 |
+
import json
|
| 5 |
+
from pathlib import Path
|
| 6 |
+
|
| 7 |
+
import numpy as np
|
| 8 |
+
import yaml
|
| 9 |
+
|
| 10 |
+
try:
|
| 11 |
+
import h5py
|
| 12 |
+
except ImportError as exc:
|
| 13 |
+
raise SystemExit("fake_data.py requires h5py; install it in the active OneScience environment") from exc
|
| 14 |
+
|
| 15 |
+
ROOT = Path(__file__).resolve().parents[1]
|
| 16 |
+
|
| 17 |
+
|
| 18 |
+
def main():
|
| 19 |
+
parser = argparse.ArgumentParser()
|
| 20 |
+
parser.add_argument("--config", default=str(ROOT / "conf/config.yaml"))
|
| 21 |
+
parser.add_argument("--output", default=None)
|
| 22 |
+
args = parser.parse_args()
|
| 23 |
+
with open(args.config, encoding="utf-8") as handle:
|
| 24 |
+
config = yaml.safe_load(handle)
|
| 25 |
+
metadata = {
|
| 26 |
+
"variables": config["data"]["channels"],
|
| 27 |
+
"grid": config["data"]["grid"],
|
| 28 |
+
"input_steps": config["data"]["input_steps"],
|
| 29 |
+
"output_steps": config["data"]["output_steps"],
|
| 30 |
+
"time_resolution": "1 day",
|
| 31 |
+
"source": "synthetic; not GLORYS12 values",
|
| 32 |
+
}
|
| 33 |
+
data_root = ROOT / config["data"]["data_dir"] / "data"
|
| 34 |
+
data_root.mkdir(parents=True, exist_ok=True)
|
| 35 |
+
fields = np.random.default_rng(config["project"]["seed"]).standard_normal(
|
| 36 |
+
(config["data"]["synthetic_samples"] + config["data"]["input_steps"],
|
| 37 |
+
len(config["data"]["channels"]), *config["data"]["grid"]), dtype=np.float32
|
| 38 |
+
)
|
| 39 |
+
with h5py.File(data_root / "2000.h5", "w") as handle:
|
| 40 |
+
dataset = handle.create_dataset("fields", data=fields)
|
| 41 |
+
dataset.attrs["variables"] = config["data"]["channels"]
|
| 42 |
+
dataset.attrs["time_step"] = 24
|
| 43 |
+
output = Path(args.output or ROOT / config["data"]["data_dir"] / "synthetic_metadata.json")
|
| 44 |
+
output.parent.mkdir(parents=True, exist_ok=True)
|
| 45 |
+
output.write_text(json.dumps(metadata, indent=2) + "\n", encoding="utf-8")
|
| 46 |
+
print(f"saved={output}")
|
| 47 |
+
|
| 48 |
+
|
| 49 |
+
if __name__ == "__main__":
|
| 50 |
+
main()
|
scripts/inference.py
ADDED
|
@@ -0,0 +1,43 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import argparse
|
| 2 |
+
import sys
|
| 3 |
+
from pathlib import Path
|
| 4 |
+
|
| 5 |
+
ROOT = Path(__file__).resolve().parents[1]
|
| 6 |
+
sys.path.insert(0, str(ROOT))
|
| 7 |
+
|
| 8 |
+
import torch
|
| 9 |
+
import yaml
|
| 10 |
+
|
| 11 |
+
from data_loader import SyntheticOceanDataset
|
| 12 |
+
from model.glonet import GLONET
|
| 13 |
+
|
| 14 |
+
|
| 15 |
+
def main():
|
| 16 |
+
parser = argparse.ArgumentParser()
|
| 17 |
+
parser.add_argument("--config", default=str(ROOT / "conf/config.yaml"))
|
| 18 |
+
parser.add_argument("--checkpoint", default=None)
|
| 19 |
+
args = parser.parse_args()
|
| 20 |
+
with open(args.config, encoding="utf-8") as handle:
|
| 21 |
+
config = yaml.safe_load(handle)
|
| 22 |
+
channels = len(config["data"]["channels"])
|
| 23 |
+
model = GLONET(channels * config["data"]["input_steps"], out_channels=channels,
|
| 24 |
+
hidden_channels=config["model"]["hidden_channels"], modes=config["model"]["modes"],
|
| 25 |
+
layers=config["model"]["layers"])
|
| 26 |
+
checkpoint = Path(args.checkpoint or ROOT / config["training"]["checkpoint"])
|
| 27 |
+
state = torch.load(checkpoint, map_location="cpu", weights_only=False)
|
| 28 |
+
model.load_state_dict(state["model"])
|
| 29 |
+
model.eval()
|
| 30 |
+
sample, _ = SyntheticOceanDataset(1, channels, config["data"]["grid"],
|
| 31 |
+
input_steps=config["data"]["input_steps"],
|
| 32 |
+
output_steps=config["data"]["output_steps"],
|
| 33 |
+
data_dir=str(ROOT / config["data"]["data_dir"]))[0]
|
| 34 |
+
with torch.no_grad():
|
| 35 |
+
prediction = model(sample.unsqueeze(0))
|
| 36 |
+
output = ROOT / config["project"]["result_dir"] / "data" / "prediction.pt"
|
| 37 |
+
output.parent.mkdir(parents=True, exist_ok=True)
|
| 38 |
+
torch.save(prediction, output)
|
| 39 |
+
print(f"prediction_shape={tuple(prediction.shape)}")
|
| 40 |
+
|
| 41 |
+
|
| 42 |
+
if __name__ == "__main__":
|
| 43 |
+
main()
|
scripts/result.py
ADDED
|
@@ -0,0 +1,139 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import argparse
|
| 2 |
+
import sys
|
| 3 |
+
from pathlib import Path
|
| 4 |
+
|
| 5 |
+
ROOT = Path(__file__).resolve().parents[1]
|
| 6 |
+
sys.path.insert(0, str(ROOT))
|
| 7 |
+
|
| 8 |
+
import math
|
| 9 |
+
|
| 10 |
+
import matplotlib.pyplot as plt
|
| 11 |
+
import numpy as np
|
| 12 |
+
import torch
|
| 13 |
+
import yaml
|
| 14 |
+
|
| 15 |
+
|
| 16 |
+
def load_field(path, time_index=0):
|
| 17 |
+
"""Return a prediction as [C, H, W] from common model output layouts."""
|
| 18 |
+
value = torch.load(path, map_location="cpu", weights_only=False)
|
| 19 |
+
if isinstance(value, dict):
|
| 20 |
+
for key in ("prediction", "predictions", "output", "outputs"):
|
| 21 |
+
if key in value:
|
| 22 |
+
value = value[key]
|
| 23 |
+
break
|
| 24 |
+
field = torch.as_tensor(value).detach().cpu().float().numpy()
|
| 25 |
+
if field.ndim == 5: # [B, T, C, H, W]
|
| 26 |
+
field = field[0, time_index]
|
| 27 |
+
elif field.ndim == 4: # [B, C, H, W] or [T, C, H, W]
|
| 28 |
+
field = field[0 if field.shape[0] == 1 else time_index]
|
| 29 |
+
elif field.ndim != 3:
|
| 30 |
+
raise ValueError(f"Expected [C,H,W], [B,C,H,W], or [B,T,C,H,W], got {field.shape}")
|
| 31 |
+
if field.ndim != 3:
|
| 32 |
+
raise ValueError(f"Selected output is not [C,H,W]: {field.shape}")
|
| 33 |
+
return field
|
| 34 |
+
|
| 35 |
+
|
| 36 |
+
def load_channel_names(config_path, channel_count):
|
| 37 |
+
if config_path is None:
|
| 38 |
+
return [f"channel_{index}" for index in range(channel_count)]
|
| 39 |
+
with open(config_path, encoding="utf-8") as handle:
|
| 40 |
+
config = yaml.safe_load(handle)
|
| 41 |
+
names = config.get("data", {}).get("channels", [])
|
| 42 |
+
if len(names) != channel_count:
|
| 43 |
+
return [f"channel_{index}" for index in range(channel_count)]
|
| 44 |
+
return names
|
| 45 |
+
|
| 46 |
+
|
| 47 |
+
def choose_channels(names, requested, max_panels):
|
| 48 |
+
if requested:
|
| 49 |
+
selected = []
|
| 50 |
+
for item in requested:
|
| 51 |
+
if item.isdigit():
|
| 52 |
+
index = int(item)
|
| 53 |
+
if not 0 <= index < len(names):
|
| 54 |
+
raise ValueError(f"Channel index out of range: {index}")
|
| 55 |
+
else:
|
| 56 |
+
if item not in names:
|
| 57 |
+
raise ValueError(f"Unknown channel: {item}")
|
| 58 |
+
index = names.index(item)
|
| 59 |
+
if index not in selected:
|
| 60 |
+
selected.append(index)
|
| 61 |
+
return selected
|
| 62 |
+
return list(range(min(max_panels, len(names))))
|
| 63 |
+
|
| 64 |
+
|
| 65 |
+
def is_signed_channel(name):
|
| 66 |
+
return name.startswith(("u_", "v_")) or name.startswith("ssh_")
|
| 67 |
+
|
| 68 |
+
|
| 69 |
+
def plot_fields(field, names, indices, output, title, reference=None):
|
| 70 |
+
columns = min(3, len(indices))
|
| 71 |
+
rows = math.ceil(len(indices) / columns)
|
| 72 |
+
has_reference = reference is not None
|
| 73 |
+
fig, axes = plt.subplots(rows, columns, figsize=(5.6 * columns, 4.4 * rows), squeeze=False)
|
| 74 |
+
axes = axes.ravel()
|
| 75 |
+
height, width = field.shape[-2:]
|
| 76 |
+
longitude = np.linspace(0, 360, width, endpoint=False)
|
| 77 |
+
latitude = np.linspace(90, -90, height)
|
| 78 |
+
extent = [longitude[0], longitude[-1], latitude[-1], latitude[0]]
|
| 79 |
+
|
| 80 |
+
for axis, index in zip(axes, indices):
|
| 81 |
+
data = field[index]
|
| 82 |
+
reference_data = reference[index] if has_reference else None
|
| 83 |
+
if reference_data is not None:
|
| 84 |
+
data_min = min(np.nanpercentile(data, 2), np.nanpercentile(reference_data, 2))
|
| 85 |
+
data_max = max(np.nanpercentile(data, 98), np.nanpercentile(reference_data, 98))
|
| 86 |
+
else:
|
| 87 |
+
data_min, data_max = np.nanpercentile(data, [2, 98])
|
| 88 |
+
if np.isclose(data_min, data_max):
|
| 89 |
+
data_min, data_max = float(np.nanmin(data)), float(np.nanmax(data) + 1e-6)
|
| 90 |
+
cmap = "RdBu_r" if is_signed_channel(names[index]) else "viridis"
|
| 91 |
+
image = axis.imshow(data, extent=extent, origin="upper", cmap=cmap,
|
| 92 |
+
vmin=data_min, vmax=data_max, aspect="auto")
|
| 93 |
+
axis.set_title(names[index], fontsize=11, fontweight="bold")
|
| 94 |
+
axis.set_xlabel("Longitude (degrees)")
|
| 95 |
+
axis.set_ylabel("Latitude (degrees)")
|
| 96 |
+
axis.set_xticks([0, 90, 180, 270, 360])
|
| 97 |
+
axis.set_yticks([-90, -45, 0, 45, 90])
|
| 98 |
+
axis.grid(color="white", linewidth=0.35, alpha=0.35)
|
| 99 |
+
colorbar = fig.colorbar(image, ax=axis, fraction=0.046, pad=0.04)
|
| 100 |
+
colorbar.ax.tick_params(labelsize=8)
|
| 101 |
+
stats = f"min {np.nanmin(data):.3g} | max {np.nanmax(data):.3g} | mean {np.nanmean(data):.3g}"
|
| 102 |
+
if reference_data is not None:
|
| 103 |
+
rmse = np.sqrt(np.nanmean((data - reference_data) ** 2))
|
| 104 |
+
stats += f" | RMSE {rmse:.3g}"
|
| 105 |
+
axis.text(0.02, 0.02, stats, transform=axis.transAxes, fontsize=8,
|
| 106 |
+
color="white", bbox={"facecolor": "black", "alpha": 0.55, "pad": 3})
|
| 107 |
+
|
| 108 |
+
for axis in axes[len(indices):]:
|
| 109 |
+
axis.remove()
|
| 110 |
+
fig.suptitle(title, fontsize=15, fontweight="bold")
|
| 111 |
+
fig.tight_layout()
|
| 112 |
+
fig.savefig(output, dpi=180, bbox_inches="tight")
|
| 113 |
+
plt.close(fig)
|
| 114 |
+
|
| 115 |
+
|
| 116 |
+
def main():
|
| 117 |
+
parser = argparse.ArgumentParser()
|
| 118 |
+
parser.add_argument("--input", default=str(ROOT / "result/glonet/data/prediction.pt"))
|
| 119 |
+
parser.add_argument("--output", default=str(ROOT / "result/glonet/prediction.png"))
|
| 120 |
+
parser.add_argument("--config", default=str(ROOT / "conf/config.yaml"))
|
| 121 |
+
parser.add_argument("--reference", default=None, help="Optional .pt truth field for RMSE comparison")
|
| 122 |
+
parser.add_argument("--channel", action="append", help="Channel name or zero-based index; repeatable")
|
| 123 |
+
parser.add_argument("--max-panels", type=int, default=6)
|
| 124 |
+
parser.add_argument("--time-index", type=int, default=0)
|
| 125 |
+
args = parser.parse_args()
|
| 126 |
+
prediction = load_field(args.input, args.time_index)
|
| 127 |
+
names = load_channel_names(args.config, prediction.shape[0])
|
| 128 |
+
indices = choose_channels(names, args.channel, args.max_panels)
|
| 129 |
+
reference = load_field(args.reference, args.time_index) if args.reference else None
|
| 130 |
+
if reference is not None and reference.shape != prediction.shape:
|
| 131 |
+
raise ValueError(f"Prediction/reference shape mismatch: {prediction.shape} vs {reference.shape}")
|
| 132 |
+
Path(args.output).parent.mkdir(parents=True, exist_ok=True)
|
| 133 |
+
plot_fields(prediction, names, indices, args.output,
|
| 134 |
+
f"GLONET ocean forecast | {len(indices)} channel(s)", reference)
|
| 135 |
+
print(f"saved={args.output}")
|
| 136 |
+
|
| 137 |
+
|
| 138 |
+
if __name__ == "__main__":
|
| 139 |
+
main()
|
scripts/train.py
ADDED
|
@@ -0,0 +1,99 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
import argparse
|
| 2 |
+
import os
|
| 3 |
+
import sys
|
| 4 |
+
from pathlib import Path
|
| 5 |
+
|
| 6 |
+
ROOT = Path(__file__).resolve().parents[1]
|
| 7 |
+
sys.path.insert(0, str(ROOT))
|
| 8 |
+
|
| 9 |
+
import torch
|
| 10 |
+
import torch.distributed as dist
|
| 11 |
+
import yaml
|
| 12 |
+
from torch.nn.parallel import DistributedDataParallel as DDP
|
| 13 |
+
from torch.utils.data import DataLoader, DistributedSampler
|
| 14 |
+
|
| 15 |
+
from data_loader import SyntheticOceanDataset
|
| 16 |
+
from model.glonet import GLONET
|
| 17 |
+
|
| 18 |
+
|
| 19 |
+
def setup_distributed():
|
| 20 |
+
world_size = int(os.environ.get("WORLD_SIZE", "1"))
|
| 21 |
+
if world_size == 1:
|
| 22 |
+
return 0, 0, torch.device("cuda" if torch.cuda.is_available() else "cpu")
|
| 23 |
+
local_rank = int(os.environ["LOCAL_RANK"])
|
| 24 |
+
force_cpu = os.environ.get("GLONET_FORCE_CPU", "0") == "1"
|
| 25 |
+
if torch.cuda.is_available() and not force_cpu:
|
| 26 |
+
device_count = torch.cuda.device_count()
|
| 27 |
+
if local_rank >= device_count:
|
| 28 |
+
raise RuntimeError(
|
| 29 |
+
f"LOCAL_RANK={local_rank} but only {device_count} accelerator(s) are visible; "
|
| 30 |
+
"reduce --nproc_per_node or fix CUDA_VISIBLE_DEVICES."
|
| 31 |
+
)
|
| 32 |
+
torch.cuda.set_device(local_rank)
|
| 33 |
+
device = torch.device("cuda", local_rank)
|
| 34 |
+
backend = "nccl"
|
| 35 |
+
else:
|
| 36 |
+
device = torch.device("cpu")
|
| 37 |
+
backend = "gloo"
|
| 38 |
+
dist.init_process_group(backend=backend, init_method="env://")
|
| 39 |
+
return dist.get_rank(), local_rank, device
|
| 40 |
+
|
| 41 |
+
|
| 42 |
+
def main():
|
| 43 |
+
parser = argparse.ArgumentParser()
|
| 44 |
+
parser.add_argument("--config", default=str(ROOT / "conf/config.yaml"))
|
| 45 |
+
parser.add_argument("--phase", choices=["pretrain", "finetune"], default="pretrain")
|
| 46 |
+
args = parser.parse_args()
|
| 47 |
+
with open(args.config, encoding="utf-8") as handle:
|
| 48 |
+
config = yaml.safe_load(handle)
|
| 49 |
+
rank, local_rank, device = setup_distributed()
|
| 50 |
+
torch.manual_seed(config["project"]["seed"] + rank)
|
| 51 |
+
channels = len(config["data"]["channels"])
|
| 52 |
+
rollout_steps = config["training"][f"{args.phase}_rollout_steps"]
|
| 53 |
+
dataset = SyntheticOceanDataset(config["data"]["synthetic_samples"], channels, config["data"]["grid"],
|
| 54 |
+
input_steps=config["data"]["input_steps"],
|
| 55 |
+
output_steps=config["data"]["output_steps"],
|
| 56 |
+
data_dir=str(ROOT / config["data"]["data_dir"]))
|
| 57 |
+
sampler = DistributedSampler(dataset, shuffle=True) if dist.is_initialized() else None
|
| 58 |
+
loader = DataLoader(dataset, batch_size=config["data"]["batch_size"], shuffle=sampler is None, sampler=sampler)
|
| 59 |
+
model = GLONET(channels * config["data"]["input_steps"], out_channels=channels,
|
| 60 |
+
hidden_channels=config["model"]["hidden_channels"], modes=config["model"]["modes"],
|
| 61 |
+
layers=config["model"]["layers"]).to(device)
|
| 62 |
+
checkpoint = ROOT / config["training"]["checkpoint"]
|
| 63 |
+
if args.phase == "finetune" and checkpoint.exists():
|
| 64 |
+
state = torch.load(checkpoint, map_location=device, weights_only=False)
|
| 65 |
+
model.load_state_dict(state["model"])
|
| 66 |
+
if dist.is_initialized():
|
| 67 |
+
model = DDP(model, device_ids=[local_rank] if device.type == "cuda" else None)
|
| 68 |
+
optimizer = torch.optim.Adam(model.parameters(), lr=config["training"]["learning_rate"])
|
| 69 |
+
for epoch in range(config["training"]["epochs"]):
|
| 70 |
+
if sampler is not None:
|
| 71 |
+
sampler.set_epoch(epoch)
|
| 72 |
+
model.train()
|
| 73 |
+
total = 0.0
|
| 74 |
+
for inputs, targets in loader:
|
| 75 |
+
inputs, targets = inputs.to(device), targets.to(device)
|
| 76 |
+
optimizer.zero_grad(set_to_none=True)
|
| 77 |
+
loss = 0.0
|
| 78 |
+
state = inputs
|
| 79 |
+
for step in range(rollout_steps):
|
| 80 |
+
prediction = model(state)
|
| 81 |
+
loss = loss + torch.nn.functional.mse_loss(prediction, targets[:, step])
|
| 82 |
+
state = torch.cat((state[:, 1:], prediction.unsqueeze(1)), dim=1)
|
| 83 |
+
loss = loss / rollout_steps
|
| 84 |
+
loss.backward()
|
| 85 |
+
optimizer.step()
|
| 86 |
+
total += loss.item()
|
| 87 |
+
if rank == 0:
|
| 88 |
+
print(f"epoch={epoch + 1} loss={total / len(loader):.6f}")
|
| 89 |
+
if rank == 0:
|
| 90 |
+
checkpoint.parent.mkdir(parents=True, exist_ok=True)
|
| 91 |
+
torch.save({"model": model.module.state_dict() if hasattr(model, "module") else model.state_dict(),
|
| 92 |
+
"config": config}, checkpoint)
|
| 93 |
+
print(f"saved={checkpoint}")
|
| 94 |
+
if dist.is_initialized():
|
| 95 |
+
dist.destroy_process_group()
|
| 96 |
+
|
| 97 |
+
|
| 98 |
+
if __name__ == "__main__":
|
| 99 |
+
main()
|
weight/.gitkeep
ADDED
|
File without changes
|