config.json

{
  "project": "GPSite",
  "task": "protein binding-site inference",
  "entrypoint": "scripts/run_gpu_infer.sh",
  "default_command": "bash scripts/run_gpu_infer.sh 0 ./conf/example/demo.fa ./results/",
  "layout": {
    "conf": "Datasets, examples, images, license, and archived dependency source files.",
    "model": "GPSite fold checkpoints: fold0.ckpt to fold4.ckpt.",
    "scripts": "Prediction, feature extraction, model definition, and run scripts.",
    "weight": "External foundation-model weights used by ESMFold."
  },
  "paths": {
    "gpsite_root": "/public/home/scnb9biwet/jiangqq/GPSite-main",
    "prottrans_path": "/public/home/scnb9biwet/jiangqq/UniKP-main/prot_t5_xl_uniref50",
    "esmfold_hub_dir": "/public/home/scnb9biwet/jiangqq/GPSite-main/weight",
    "esmfold_weight": "/public/home/scnb9biwet/jiangqq/GPSite-main/weight/checkpoints/esmfold_3B_v1.pt",
    "esm2_weight": "/public/home/scnb9biwet/jiangqq/GPSite-main/weight/checkpoints/esm2_t36_3B_UR50D.pt",
    "esm2_contact_regression_weight": "/public/home/scnb9biwet/jiangqq/GPSite-main/weight/checkpoints/esm2_t36_3B_UR50D-contact-regression.pt"
  }
}