numpy==1.24.3 pytorch==1.13.1 pytorch-scatter==2.1.1 pytorch-cluster==1.6.1 pyg==2.3.0 biopython==1.81 fair-esm==2.0.0 dllogger==1.0.0 openfold==1.0.1 sentencepiece==0.1.99 transformers==4.30.1 fair-esm[esmfold] dllogger @ git+https://github.com/NVIDIA/dllogger.git modelcif==0.7 SentencePiece